Multimodal-Boost: Multimodal Medical Image Super-Resolution using Multi-Attention Network with Wavelet Transform
Chinese Academy of Sciences（中国科学院）；University of Chinese Academy of Sciences（中国科学院大学）；Walton Institute for Information and Communication Systems Science（沃尔顿信息与通信系统科学研究所）；Waterford Institute of Technology（沃特福德理工学院）；University of Johannesburg（约翰内斯堡大学）；University of Sindh（信德大学）；Sungkyunkwan University（成均馆大学）
Fayaz Ali Dharejo, Muhammad Zawish, Farah Deeba Yuanchun Zhou, Kapal Dev, Sunder Ali Khowaja, Nawab Muhammad Faseeh Qureshi
备注：
14 pages, 13 Figures, and 3 Tables. Submitted to IEEE/ACM TCBB
Deep learning based single image super resolution (SISR) algorithms has revolutionized the overall diagnosis framework by continually improving the architectural components and training strategies associated with convolutional neural networks (CNN) on low-resolution images. However, existing work lacks in two ways: i) the SR output produced exhibits poor texture details, and often produce blurred edges, ii) most of the models have been developed for a single modality, hence, require modification to adapt to a new one. This work addresses (i) by proposing generative adversarial network (GAN) with deep multi-attention modules to learn high-frequency information from low-frequency data. Existing approaches based on the GAN have yielded good SR results; however, the texture details of their SR output have been experimentally confirmed to be deficient for medical images particularly. The integration of wavelet transform (WT) and GANs in our proposed SR model addresses the aforementioned limitation concerning textons. While the WT divides the LR image into multiple frequency bands, the transferred GAN uses multi-attention and upsample blocks to predict high-frequency components. Additionally, we present a learning method for training domain-specific classifiers as perceptual loss functions. Using a combination of multi-attention GAN loss and a perceptual loss function results in an efficient and reliable performance. Applying the same model for medical images from diverse modalities is challenging, our work addresses (ii) by training and performing on several modalities via transfer learning. Using two medical datasets, we validate our proposed SR network against existing state-of-the-art approaches and achieve promising results in terms of SSIM and PSNR.
RVS College of Engineering and Technology（RVS工程技术学院）
In recent years, many research achievements are made in the medical image fusion field. Fusion is basically extraction of best of inputs and conveying it to the output. Medical Image fusion means that several of various modality image information is comprehended together to form one image to express its information. The aim of image fusion is to integrate complementary and redundant information. In this paper, a multimodal image fusion algorithm based on the dual-tree complex wavelet transform (DT-CWT) and adaptive particle swarm optimization (APSO) is proposed. Fusion is achieved through the …
Multi-modal Medical Neurological Image Fusion using Wavelet Pooled Edge Preserving Autoencoder
Visvesvaraya National Institute of Technology Nagpur（维斯瓦瓦拉亚那格浦尔国家理工学院）；Universitat de Barcelona（巴塞罗那大学）；Computer Vision Center（计算机视觉中心）；All India Institute of Medical Sciences Nagpur（全印那格浦尔医学科学研究所）
Image fusion produces a single fused image from a set of input images. A new method for image fusion is proposed based on Weighted Average Merging Method (WAMM) in the NonSubsampled Contourlet Transform (NSCT) domain. A performance analysis on various statistical fusion rules are also analysed both in NSCT and Wavelet domain. Analysis has been made on medical images, remote sensing images and multi focus images. Experimental results shows that the proposed method, WAMM obtained better results in NSCT domain than the wavelet domain as it preserves more edges and keeps the visual quality intact …
With the development of human communications the usage of Visual Communications has also increased. The advancement of image compression methods is one of the main reasons for the enhancement. This paper first presents main modes of image compression methods such as JPEG and JPEG2000 without mathematical details. Also, the paper describes gradient Haar wavelet transforms in order to construct a preliminary image compression algorithm. Then, a new image compression method is proposed based on the preliminary image compression algorithm that can improve standards of image compression. The new me…
Northern Arizona University（北亚利桑那大学）；Xi’an Network Computing Data Technology Co., Ltd.（西安网络计算数据技术有限公司）
Convolutional layers in Artificial Neural Networks (ANN) treat the channel features equally without feature selection flexibility. While using ANNs for image denoising in real-world applications with unknown noise distributions, particularly structured noise with learnable patterns, modeling informative features can substantially boost the performance. Channel attention methods in real image denoising tasks exploit dependencies between the feature channels, hence being a frequency component filtering mechanism. Existing channel attention modules typically use global statics as descriptors to l…
Mullard Space Science Laboratory (MSSL)（穆拉德空间科学实验室）；University College London (UCL)（伦敦大学学院）
Segmentation, a useful/powerful technique in pattern recognition, is the process of identifying object outlines within images. There are a number of efficient algorithms for segmentation in Euclidean space that depend on the variational approach and partial differential equation modelling. Wavelets have been used successfully in various problems in image processing, including segmentation, inpainting, noise removal, super-resolution image restoration, and many others. Wavelets on the sphere have been developed to solve such problems for data defined on the sphere, which arise in numerous field…
Image denoising is getting more significance, especially in Computed Tomography (CT), which is an important and most common modality in medical imaging. This is mainly due to that the effectiveness of clinical diagnosis using CT image lies on the image quality. The denoising technique for CT images using window-based Multi-wavelet transformation and thresholding shows the effectiveness in denoising, however, a drawback exists in selecting the closer windows in the process of window-based multi-wavelet transformation and thresholding. Generally, the windows of the duplicate noisy image that are…
A huge advantage of the wavelet transform in image and video compression is its scalability. Wavelet-based coding of medical computed tomography (CT) data becomes more and more popular. While much effort has been spent on encoding of the wavelet coefficients, the extension of the transform by a compensation method as in video coding has not gained much attention so far. We will analyze two compensation methods for medical CT data and compare the characteristics of the displacement compensated wavelet transform with video data. We will show that for thorax CT data the transform coding gain can …
LLCaps: Learning to Illuminate Low-Light Capsule Endoscopy with Curved Wavelet Attention and Reverse Diffusion
The University of Sydney（悉尼大学）；The Chinese University of Hong Kong (CUHK)（香港中文大学）；Northeastern University（东北大学）；University College London（伦敦大学学院）；Shun Hing Institute of Advanced Engineering, CUHK（香港中文大学信兴高等工程研究所）
In this research paper, authors propose multimodal brain image registration using discrete wavelet transform(DWT) followed by Gaussian pyramids. The reference and target images are decomposed into their LL, LH, HL and LL DWT coefficients and then are processed for image registration using Gaussian pyramids. The image registration is also done using Gaussian pyramids only and wavelets transforms only for comparison. The quality of registration is measured by comparing the maximum MI values used by the three methods and also by comparing their correlation coefficients. Our proposed technique pro…
WDMamba: When Wavelet Degradation Prior Meets Vision Mamba for Image Dehazing
School of Computer Science and Technology, Anhui University of Technology（安徽理工大学计算机科学与技术学院）；Tsinghua Shenzhen International Graduate School, Tsinghua University（清华大学深圳国际研究生院）；School of Computer Science and Technology, Nanjing University of Aeronautics and Astronautics（南京航空航天大学计算机科学与技术学院）；College of Artificial Intelligence, Taiyuan University of Technology（太原科技大学人工智能学院）
Medical applications like Computed Tomography (CT) or Magnetic Resonance Tomography (MRT) often require an efficient scalable representation of their huge output volumes in the further processing chain of medical routine. A downscaled version of such a signal can be obtained by using image and video coders based on wavelet transforms. The visual quality of the resulting lowpass band, which shall be used as a representative, can be improved by applying motion compensation methods during the transform. This paper presents a new approach of using the distorted edge lengths of a mesh-based compens…
In recent years, many research achievements are made in the medical image fusion field. Medical Image fusion means that several of various modality image information is comprehended together to form one image to express its information. The aim of image fusion is to integrate complementary and redundant information. CT/MRI is one of the most common medical image fusion. These medical modalities give information about different diseases. Complementary information is offered by CT and MRI. CT provides the best information about denser tissue and MRI offers better information on soft tissue. Ther…
For scalable coding, a high quality of the lowpass band of a wavelet transform is crucial when it is used as a downscaled version of the original signal. However, blur and motion can lead to disturbing artifacts. By incorporating feasible compensation methods directly into the wavelet transform, the quality of the lowpass band can be improved. The displacement in dynamic medical 3-D+t volumes from Computed Tomography is mainly given by expansion and compression of tissue over time and can be modeled well by mesh-based methods. We extend a 2-D mesh-based compensation method to three dimensions …
An efficient scalable data representation is an important task especially in the medical area, e.g. for volumes from Computed Tomography (CT) or Magnetic Resonance Tomography (MRT), when a downscaled version of the original signal is needed. Image and video coders based on wavelet transforms provide an adequate way to naturally achieve scalability. This paper presents a new approach for improving the visual quality of the lowpass band by using a novel graph-based method for motion compensation, which is an important step considering data compression. We compare different kinds of neighborhoods…
Yale Center for Medical Informatics（耶鲁医学信息学中心）；VA CT Healthcare System（美国退伍军人事务部康涅狄格医疗系统）
Medical image datasets can have large number of images representing patients with different health conditions and various disease severity. When dealing with raw unlabeled image datasets, the large number of samples often makes it hard for experts and non-experts to understand the variety of images present in a dataset. Supervised learning methods rely on labeled images which requires a considerable effort by medical experts to first understand the communities of images present in the data and then labeling the images. Here, we propose an algorithm to facilitate the automatic identification of…
For the lossless compression of dynamic 3-D+t volumes as produced by medical devices like Computed Tomography, various coding schemes can be applied. This paper shows that 3-D subband coding outperforms lossless HEVC coding and additionally provides a scalable representation, which is often required in telemedicine applications. However, the resulting lowpass subband, which shall be used as a downscaled representative of the whole original sequence, contains a lot of ghosting artifacts. This can be alleviated by incorporating motion compensation methods into the subband coder. This results in …
South China University of Technology（华南理工大学）；University of Utah（犹他大学）
We introduce the idea of inter-slice image augmentation whereby the numbers of the medical images and the corresponding segmentation labels are increased between two consecutive images in order to boost medical image segmentation accuracy. Unlike conventional data augmentation methods in medical imaging, which only increase the number of training samples directly by adding new virtual samples using simple parameterized transformations such as rotation, flipping, scaling, etc., we aim to augment data based on the relationship between two consecutive images, which increases not only the number b…
Professional applications like telemedicine often require scalable lossless coding of sensitive data. 3-D subband coding has turned out to offer good compression results for dynamic CT data and additionally provides a scalable representation in terms of low- and highpass subbands. To improve the visual quality of the lowpass subband, motion compensation can be incorporated into the lifting structure, but leads to inferior compression results at the same time. Prior work has shown that a denoising filter in the update step can improve the compression ratio. In this paper, we present a new proce…
Lossless compression of dynamic 2D+t and 3D+t medical data is challenging regarding the huge amount of data, the characteristics of the inherent noise, and the high bit depth. Beyond that, a scalable representation is often required in telemedicine applications. Motion Compensated Temporal Filtering works well for lossless compression of medical volume data and additionally provides temporal, spatial, and quality scalability features. To achieve a high quality lowpass subband, which shall be used as a downscaled representative of the original data, graph-based motion compensation was recently …
We propose a novel deep learning framework for fast prediction of boundaries of two-dimensional simply connected domains using wavelets and Multi Resolution Analysis (MRA). The boundaries are modelled as (piecewise) smooth closed curves using wavelets and the so-called Pyramid Algorithm. Our network architecture is a hybrid analog of the U-Net, where the down-sampling path is a two-dimensional encoder with learnable filters, and the upsampling path is a one-dimensional decoder, which builds curves up from low to high resolution levels. Any wavelet basis induced by a MRA can be used. This flexi…
National University of Singapore（新加坡国立大学）；National University Hospital（国立大学医院）；Zhejiang University（浙江大学）
In this paper, we propose a novel semi-supervised learning (SSL) framework named BoostMIS that combines adaptive pseudo labeling and informative active annotation to unleash the potential of medical image SSL models: (1) BoostMIS can adaptively leverage the cluster assumption and consistency regularization of the unlabeled data according to the current learning status. This strategy can adaptively generate one-hot "hard" labels converted from task model predictions for better task model training. (2) For the unselected unlabeled images with low confidence, we introduce an Active learning (AL) …
Diffusion models are rising as a powerful solution for high-fidelity image generation, which exceeds GANs in quality in many circumstances. However, their slow training and inference speed is a huge bottleneck, blocking them from being used in real-time applications. A recent DiffusionGAN method significantly decreases the models' running time by reducing the number of sampling steps from thousands to several, but their speeds still largely lag behind the GAN counterparts. This paper aims to reduce the speed gap by proposing a novel wavelet-based diffusion scheme. We extract low-and-high frequ…
Boosting Medical Image Segmentation Performance with Adaptive Convolution Layer
LIPN-UMR-CNRS 7030（法国国家科学研究中心UMR 7030 LIPN实验室）；Sorbonne University Paris Nord（巴黎第十一大学（索邦大学巴黎北校区））；Amirkabir University of Technology（阿米尔卡比尔理工大学）；Université Paris-Est Créteil（巴黎东部克雷泰伊大学）
In this paper, we consider the problem of super-resolution recons-truction. This is a hot topic because super-resolution reconstruction has a wide range of applications in the medical field, remote sensing monitoring, and criminal investigation. Compared with traditional algorithms, the current super-resolution reconstruction algorithm based on deep learning greatly improves the clarity of reconstructed pictures. Existing work like Super-Resolution Using a Generative Adversarial Network (SRGAN) can effectively restore the texture details of the image. However, experimentally verified that the …
Efficient lossless coding of medical volume data with temporal axis can be achieved by motion compensated wavelet lifting. As side benefit, a scalable bit stream is generated, which allows for displaying the data at different resolution layers, highly demanded for telemedicine applications. Additionally, the similarity of the temporal base layer to the input sequence is preserved by the use of motion compensated temporal filtering. However, for medical sequences the overall rate is increased due to the specific noise characteristics of the data. The use of denoising filters inside the lifting …
Lossless image coding is a crucial task especially in the medical area, e.g., for volumes from Computed Tomography or Magnetic Resonance Tomography. Besides lossless coding, compensated wavelet lifting offers a scalable representation of such huge volumes. While compensation methods increase the details in the lowpass band, they also vary the characteristics of the wavelet coefficients, so an adaption of the coefficient coder should be considered. We propose a simple invertible extension for JPEG 2000 that can reduce the filesize for lossless coding of the highpass band by 0.8% on average with…
Factorized in the lifting structure, the wavelet transform can easily be extended by arbitrary compensation methods. Thereby, the transform can be adapted to displacements in the signal without losing the ability of perfect reconstruction. This leads to an improvement of scalability. In temporal direction of dynamic medical 3-D+t volumes from Computed Tomography, displacement is mainly given by expansion and compression of tissue. We show that these smooth movements can be well compensated with a mesh-based method. We compare the properties of triangle and quadrilateral meshes. We also show th…
2.75D: Boosting learning by representing 3D Medical imaging to 2D features for small data
Netherlands Cancer Institute（荷兰癌症研究所）；Erasmus Medical Center Rotterdam（鹿特丹伊拉斯姆斯医学中心）；Radboud University Medical Center（拉德堡德大学医学中心）；Southern University of Science and Technology（南方科技大学）；Aberystwyth University（阿伯里斯特威斯大学）
Enhancing Global Sensitivity and Uncertainty Quantification in Medical Image Reconstruction with Monte Carlo Arbitrary-Masked Mamba
Imperial College London（帝国理工学院）；Royal Brompton Hospital（皇家布朗普顿医院）；College of Computer Science and Technology, Nanjing University of Aeronautics and Astronautics（南京航空航天大学计算机科学与技术学院）；School of Biomedical Engineering, Shenzhen Campus of Sun Yat-sen University（中山大学深圳校区生物医学工程学院）；Human Phenome Institute, Fudan University（复旦大学人类表型组研究院）；Inselspital, University of Bern（伯尔尼大学因塞尔医院）；Technical University of Munich（慕尼黑工业大学）
Med-URWKV†: Toward Enhanced Pretrained Pure VRWKV Models for Medical Image Segmentation
College of Computer Science, Nankai University（南开大学计算机科学学院）；Key Laboratory of Data and Intelligent System Security, Ministry of Education（教育部数据与智能系统安全重点实验室）；School of Medicine, Nankai University（南开大学医学院）；Nankai University Eye institute, Nankai University（南开大学眼科研究院）；Tianjn Eye Hospital（天津眼科医院）；Haihe Lab of ITAI（海河ITAI实验室）
Boosting Convolution with Efficient MLP-Permutation for Volumetric Medical Image Segmentation
Department of Computer Science and Engineering（计算机科学与工程系）；The Hong Kong University of Science and Technology（香港科学与技术大学）；HKUST Shenzhen-Hong Kong Collaborative Innovation Research Institute（HKUST深圳-香港协同创新研究院）
LMU München（慕尼黑大学）；Technische Universität München（慕尼黑工业大学）；Johns Hopkins University（约翰斯·霍普金斯大学）
Fully Convolutional Neural Networks (F-CNNs) achieve state-of-the-art performance for image segmentation in medical imaging. Recently, squeeze and excitation (SE) modules and variations thereof have been introduced to recalibrate feature maps channel- and spatial-wise, which can boost performance while only minimally increasing model complexity. So far, the development of SE has focused on 2D images. In this paper, we propose `Project & Excite' (PE) modules that base upon the ideas of SE and extend them to operating on 3D volumetric images. `Project & Excite' does not perform global average po…
Adaptive Wavelet Filters as Practical Texture Feature Amplifiers for Parkinson's Disease Screening in OCT
Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；Department of Computer Science and Engineering, Southern University of Science and Technology（南方科技大学计算机科学与工程系）；State Key Laboratory of Ophthalmology, Optometry and Vision Science, Wenzhou Medical University（温州医科大学眼视光学与视觉科学国家重点实验室）；Coventry University（考文垂大学）；School of Computer Science, University of Nottingham Ningbo China（宁波诺丁汉大学计算机学院）；School of Ophthalmology and Optometry, Wenzhou Medical University（温州医科大学眼视光学院）；Department of Electronic and Information Engineering, Changchun University（长春大学电子与信息工程学院）
Unsupervised pre-training has been proven as an effective approach to boost various downstream tasks given limited labeled data. Among various methods, contrastive learning learns a discriminative representation by constructing positive and negative pairs. However, it is not trivial to build reasonable pairs for a segmentation task in an unsupervised way. In this work, we propose a novel unsupervised pre-training framework that avoids the drawback of contrastive learning. Our framework consists of two principles: unsupervised over-segmentation as a pre-train task using mutual information maxim…
Networks with large receptive field (RF) have shown advanced fitting ability in recent years. In this work, we utilize the short-term residual learning method to improve the performance and robustness of networks for image denoising tasks. Here, we choose a multi-wavelet convolutional neural network (MWCNN), one of the state-of-art networks with large RF, as the backbone, and insert residual dense blocks (RDBs) in its each layer. We call this scheme multi-wavelet residual dense convolutional neural network (MWRDCNN). Compared with other RDB-based networks, it can extract more features of the o…
Boosting Vision Semantic Density with Anatomy Normality Modeling for Medical Vision-language Pre-training
College of Computer Science and Technology, Zhejiang University（浙江大学计算机科学与技术学院）；DAMO Academy, Alibaba Group（阿里巴巴集团达摩院）；The First Affiliated Hospital of College of Medicine, Zhejiang University（浙江大学医学院附属第一医院）；Hupan Lab（虎盘实验室）
Tunable Wavelet Unit based Convolutional Neural Network in Optical Coherence Tomography Analysis Enhancement for Classifying Type of Epiretinal Membrane Surgery
University of California San Diego（加州大学圣迭戈分校）；Jacobs Retina Center（雅各布视网膜中心）
École de Technologie Supérieure, Université du Québec（魁北克大学高等技术学院）
Breast cancer is a health problem that affects mainly the female population. An early detection increases the chances of effective treatment, improving the prognosis of the disease. In this regard, computational tools have been proposed to assist the specialist in interpreting the breast digital image exam, providing features for detecting and diagnosing tumors and cancerous cells. Nonetheless, detecting tumors with a high sensitivity rate and reducing the false positives rate is still challenging. Texture descriptors have been quite popular in medical image analysis, particularly in histopath…
