Autism Spectrum Disorder(ASD) is a set of neurodevelopmental conditions that affect patients' social abilities. In recent years, many studies have employed deep learning to diagnose this brain dysfunction through functional MRI (fMRI). However, existing approaches solely focused on the abnormal brain functional connections but ignored the impact of regional activities. Due to this biased prior knowledge, previous diagnosis models suffered from inter-site measurement heterogeneity and inter-individual phenotypic differences. To address this issue, we propose a novel feature extraction method for fMRI that can learn a personalized lower-resolution representation of the entire brain networking regarding both the functional connections and regional activities. Specifically, we abstract the brain imaging as a graph structure and straightforwardly downsample it to substructures by hierarchical graph pooling. To further recalibrate the distribution of the extracted features under phenotypic information, we subsequently embed the sparse feature vectors into a population graph, where the hidden inter-subject heterogeneity and homogeneity are explicitly expressed as inter- and intra-community connectivity differences, and utilize Graph Convolutional Networks to learn the node embeddings. By these means, our framework can extract features directly and efficiently from the entire fMRI and be aware of implicit inter-individual variance. We have evaluated our framework on the ABIDE-I dataset with 10-fold cross-validation. The present model has achieved a mean classification accuracy of 87.62\% and a mean AUC of 0.92, better than the state-of-the-art methods.
Autism spectrum disorder (ASD) is associated with behavioral and communication problems. Often, functional magnetic resonance imaging (fMRI) is used to detect and characterize brain changes related to the disorder. Recently, machine learning methods have been employed to reveal new patterns by trying to classify ASD from spatio-temporal fMRI images. Typically, these methods have either focused on temporal or spatial information processing. Instead, we propose a 4D spatio-temporal deep learning approach for ASD classification where we jointly learn from spatial and temporal data. We employ 4D c…
a Division of Medical Informatics, Department of Biomedical Engineering b Division of Statistics \& Machine Learning, Department of Computer；Information Science c Center for Medical Image Science；Visualization (CMIV) \ \" o ping University, Sweden
Classifying subjects as healthy or diseased using neuroimaging data has gained a lot of attention during the last 10 years. Here we apply deep learning to derivatives from resting state fMRI data, and investigate how different 3D augmentation techniques affect the test accuracy. Specifically, we use resting state derivatives from 1,112 subjects in ABIDE preprocessed to train a 3D convolutional neural network (CNN) to perform the classification. Our results show that augmentation only provide minor improvements to the test accuracy.
Autism Spectrum Disorder (ASD) is a severe neuropsychiatric disorder that affects intellectual development, social behavior, and facial features, and the number of cases is still significantly increasing. Due to the variety of symptoms ASD displays, the diagnosis process remains challenging, with numerous misdiagnoses as well as lengthy and expensive diagnoses. Fortunately, if ASD is diagnosed and treated early, then the patient will have a much higher chance of developing normally. For an ASD diagnosis, machine learning algorithms can analyze both social behavior and facial features accuratel…
Indian Institute of Technology Mandi（印度理工学院曼迪分校）；Indian Institute of Technology Jodhpur（印度理工学院焦特布尔分校）
Resting-state fMRI is commonly used for diagnosing Autism Spectrum Disorder (ASD) by using network-based functional connectivity. It has been shown that ASD is associated with brain regions and their inter-connections. However, discriminating based on connectivity patterns among imaging data of the control population and that of ASD patients' brains is a non-trivial task. In order to tackle said classification task, we propose a novel deep learning architecture (MHATC) consisting of multi-head attention and temporal consolidation modules for classifying an individual as a patient of ASD. The d…
Yale School of Medicine（耶鲁大学医学院）；Yale University（耶鲁大学）
Traditional regression models do not generalize well when learning from small and noisy datasets. Here we propose a novel metamodel structure to improve the regression result. The metamodel is composed of multiple classification base models and a regression model built upon the base models. We test this structure on the prediction of autism spectrum disorder (ASD) severity as measured by the ADOS communication (ADOS COMM) score from resting-state fMRI data, using a variety of base models. The metamodel outperforms traditional regression models as measured by the Pearson correlation coefficient…
Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）
Accurate diagnosis of autism spectrum disorder (ASD) based on neuroimaging data has significant implications, as extracting useful information from neuroimaging data for ASD detection is challenging. Even though machine learning techniques have been leveraged to improve the information extraction from neuroimaging data, the varying data quality caused by different meta-data conditions (i.e., data collection strategies) limits the effective information that can be extracted, thus leading to data-dependent predictive accuracies in ASD detection, which can be worse than random guess in some cases…
Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院深港脑科学创新研究院）；Rockefeller Neuroscience Institute, West Virginia University（西弗吉尼亚大学洛克菲勒神经科学研究所）
Eye movements have been widely investigated to study the atypical visual attention in Autism Spectrum Disorder (ASD). The majority of these studies have been focused on limited eye movement features by statistical comparisons between ASD and Typically Developing (TD) groups, which make it difficult to accurately separate ASD from TD at the individual level. The deep learning technology has been highly successful in overcoming this issue by automatically extracting features important for classification through a data-driven learning process. However, there is still a lack of end-to-end deep lea…
Southern University of Science and Technology（南方科技大学）；Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；Central South University（中南大学）
The development of noninvasive brain imaging such as resting-state functional magnetic resonance imaging (rs-fMRI) and its combination with AI algorithm provides a promising solution for the early diagnosis of Autism spectrum disorder (ASD). However, the performance of the current ASD classification based on rs-fMRI still needs to be improved. This paper introduces a classification framework to aid ASD diagnosis based on rs-fMRI. In the framework, we proposed a novel filter feature selection method based on the difference between step distribution curves (DSDC) to select remarkable functional …
Tshwane University of Technology（茨瓦内理工大学）；Waterford Institute of Technology（沃特福德理工学院）
An ensemble of classifiers combines several single classifiers to deliver a final prediction or classification decision. An increasingly provoking question is whether such systems can outperform the single best classifier. If so, what form of an ensemble of classifiers (also known as multiple classifier learning systems or multiple classifiers) yields the most significant benefits in the size or diversity of the ensemble itself? Given that the tests used to detect autism traits are time-consuming and costly, developing a system that will provide the best outcome and measurement of autism spect…
Michigan State University（密歇根州立大学）；Florida International University（佛罗里达国际大学）
Mental disorders such as Autism Spectrum Disorders (ASD) are heterogeneous disorders that are notoriously difficult to diagnose, especially in children. The current psychiatric diagnostic process is based purely on the behavioural observation of symptomology (DSM-5/ICD-10) and may be prone to over-prescribing of drugs due to misdiagnosis. In order to move the field towards more quantitative fashion, we need advanced and scalable machine learning infrastructure that will allow us to identify reliable biomarkers of mental health disorders. In this paper, we propose a framework called ASD-DiagNet…
Memorial Sloan Kettering Cancer Center（纪念斯隆凯特琳癌症中心）；New York University Langone Medical Center（纽约大学朗格尼医学中心）；Indian Institute of Technology, Madras（印度理工学院马德拉斯分校）
Purpose : Because functional MRI (fMRI) data sets are in general small, we sought a data efficient approach to resting state fMRI classification of autism spectrum disorder (ASD) versus neurotypical (NT) controls. We hypothesized that a Deep Reinforcement Learning (DRL) classifier could learn effectively on a small fMRI training set. Methods : We trained a Deep Reinforcement Learning (DRL) classifier on 100 graph-label pairs from the Autism Brain Imaging Data Exchange (ABIDE) database. For comparison, we trained a Supervised Deep Learning (SDL) classifier on the same training set. Results : DR…
University of Mons（蒙斯大学）；Fund for Scientific Research - FNRS (F.R.S.-FNRS)（比利时科学研究基金）；Swiss Data Science Center, EPFL and ETH Zürich（瑞士数据科学中心，洛桑联邦理工学院和苏黎世联邦理工学院）
While the prevalence of Autism Spectrum Disorder (ASD) is increasing, research continues in an effort to identify common etiological and pathophysiological bases. In this regard, modern machine learning and network science pave the way for a better understanding of the neuropathology and the development of diagnosis aid systems. The present work addresses the classification of neurotypical and ASD subjects by combining knowledge about both the structure and the functional activity of the brain. In particular, we model the brain structure as a graph, and the resting-state functional MRI (rs-fMR…
For machine learning applications in medical imaging, the availability of training data is often limited, which hampers the design of radiological classifiers for subtle conditions such as autism spectrum disorder (ASD). Transfer learning is one method to counter this problem of low training data regimes. Here we explore the use of meta-learning for very low data regimes in the context of having prior data from multiple sites - an approach we term site-agnostic meta-learning. Inspired by the effectiveness of meta-learning for optimizing a model across multiple tasks, here we propose a framewor…
Middle Tennessee State University（中田纳西州立大学）；St. Ambrose University（圣安布罗斯大学）
The objective of this study is to derive functional networks for the autism spectrum disorder (ASD) population using the group ICA and dictionary learning model together and to classify ASD and typically developing (TD) participants using the functional connectivity calculated from the derived functional networks. In our experiments, the ASD functional networks were derived from resting-state functional magnetic resonance imaging (rs-fMRI) data. We downloaded a total of 120 training samples, including 58 ASD and 62 TD participants, which were obtained from the public repository: Autism Brain I…
Deep learning methods are increasingly being used with neuroimaging data like structural and function magnetic resonance imaging (MRI) to predict the diagnosis of neuropsychiatric and neurological disorders. For psychiatric disorders in particular, it is believed that one of the most promising modality is the resting-state functional MRI (rsfMRI), which captures the intrinsic connectivity between regions in the brain. Because rsfMRI data points are inherently high-dimensional (~1M), it is impossible to process the entire input in its raw form. In this paper, we propose a very simple transforma…
Islamic Azad University（伊斯兰阿扎德大学）；K. N. Toosi University of Technology（K. N. 图西理工大学）；Ferdowsi University of Mashhad（马什哈德菲尔多西大学）；Semnan University（塞姆南大学）；Deakin University（迪肯大学）；Macquarie University（麦考瑞大学）；Dibrugarh University（迪布鲁格尔大学）
Accurate diagnosis of Autism Spectrum Disorder (ASD) followed by effective rehabilitation is essential for the management of this disorder. Artificial intelligence (AI) techniques can aid physicians to apply automatic diagnosis and rehabilitation procedures. AI techniques comprise traditional machine learning (ML) approaches and deep learning (DL) techniques. Conventional ML methods employ various feature extraction and classification techniques, but in DL, the process of feature extraction and classification is accomplished intelligently and integrally. DL methods for diagnosis of ASD have be…
JARA-Brain Institute II（JARA脑科学第二研究所）；RWTH Aachen University（亚琛工业大学）；Research Centre Juelich（于利希研究中心）；University Medical Center Göttingen（哥廷根大学医学中心）；Leibniz ScienceCampus Primate Cognition（莱布尼茨灵长类认知科学园区）
Research in machine learning for autism spectrum disorder (ASD) classification bears the promise to improve clinical diagnoses. However, recent studies in clinical imaging have shown the limited generalization of biomarkers across and beyond benchmark datasets. Despite increasing model complexity and sample size in neuroimaging, the classification performance of ASD remains far away from clinical application. This raises the question of how we can overcome these barriers to develop early biomarkers for ASD. One approach might be to rethink how we operationalize the theoretical basis of this di…
Islamic Azad University（伊斯兰阿扎德大学）；Ferdowsi University of Mashhad（马什哈德菲尔多西大学）；Semnan University（塞姆南大学）；Qatar Biomedical Research Institute（卡塔尔生物医学研究所）；Hamad Bin Khalifa University（哈马德·本·哈利法大学）；University of Granada（格拉纳达大学）；Deakin University（迪肯大学）；University of Technology Sydney（悉尼科技大学）；University of Turku（图尔库大学）；Effat University（埃法特大学）；Ngee Ann Polytechnic（义安理工学院）；Asia University（亚洲大学）；Singapore University of Social Sciences（新加坡社会科学大学）
Autism spectrum disorder (ASD) is a brain condition characterized by diverse signs and symptoms that appear in early childhood. ASD is also associated with communication deficits and repetitive behavior in affected individuals. Various ASD detection methods have been developed, including neuroimaging modalities and psychological tests. Among these methods, magnetic resonance imaging (MRI) imaging modalities are of paramount importance to physicians. Clinicians rely on MRI modalities to diagnose ASD accurately. The MRI modalities are non-invasive methods that include functional (fMRI) and struc…
Radiomics with deep learning models have become popular in computer-aided diagnosis and have outperformed human experts on many clinical tasks. Specifically, radiomic models based on artificial intelligence (AI) are using medical data (i.e., images, molecular data, clinical variables, etc.) for predicting clinical tasks like Autism Spectrum Disorder (ASD). In this review, we summarized and discussed the radiomic techniques used for ASD analysis. Currently, the limited radiomic work of ASD is related to variation of morphological features of brain thickness that is different from texture analys…
