Compositional data are non-negative data collected in a rectangular matrix with a constant row sum. Due to the non-negativity the focus is on conditional proportions that add up to 1 for each row. A row of conditional proportions is called an observed budget. Latent budget analysis (LBA) assumes a mixture of latent budgets that explains the observed budgets. LBA is usually fitted to a contingency table, where the rows are levels of one or more explanatory variables and the columns the levels of a response variable. In prospective studies, there is only knowledge about the explanatory variables of individuals and interest goes out to predicting the response variable. Thus, a form of LBA is needed that has the functionality of prediction. Previous studies proposed a constrained neural network (NN) extension of LBA that was hampered by an unsatisfying prediction ability. Here we propose LBA-NN, a feed forward NN model that yields a similar interpretation to LBA but equips LBA with a better ability of prediction. A stable and plausible interpretation of LBA-NN is obtained through the use of importance plots and table, that show the relative importance of all explanatory variables on the response variable. An LBA-NN-K- means approach that applies K-means clustering on the importance table is used to produce K clusters that are comparable to K latent budgets in LBA. Here we provide different experiments where LBA-NN is implemented and compared with LBA. In our analysis, LBA-NN outperforms LBA in prediction in terms of accuracy, specificity, recall and mean square error. We provide open-source software at GitHub.
The so-called gut-brain axis has stimulated extensive research on microbiomes. One focus is to assess the association between certain clinical outcomes and the relative abundances of gut microbes, which can be presented as sub-compositional data in conformity with the taxonomic hierarchy of bacteria. Motivated by a study for identifying the microbes in the gut microbiome of preterm infants that impact their later neurobehavioral outcomes, we formulate a constrained integrative multi-view regression, where the neurobehavioral scores form multivariate response, the sub-compositional microbiome d…
Conditional Generative Models are now acknowledged an essential tool in Machine Learning. This paper focuses on their control. While many approaches aim at disentangling the data through the coordinate-wise control of their latent representations, another direction is explored in this paper. The proposed CompVAE handles data with a natural multi-ensemblist structure (i.e. that can naturally be decomposed into elements). Derived from Bayesian variational principles, CompVAE learns a latent representation leveraging both observational and symbolic information. A first contribution of the approac…
Simultaneous Latent Budget Trees for Stratified Classification
Department of Physics, University of Naples Federico II（物理系，那不勒斯费德里科二世大学）；Department of Electrical Engineering and Information Technologies, University of Naples Federico II（电气工程与信息科技系，那不勒斯费德里科二世大学）
Compositional structures between parts and objects are inherent in natural scenes. Modeling such compositional hierarchies via unsupervised learning can bring various benefits such as interpretability and transferability, which are important in many downstream tasks. In this paper, we propose the first deep latent variable model, called RICH, for learning Representation of Interpretable Compositional Hierarchies. At the core of RICH is a latent scene graph representation that organizes the entities of a scene into a tree structure according to their compositional relationships. During inferenc…
We assume that a high-dimensional datum, like an image, is a compositional expression of a set of properties, with a complicated non-linear relationship between the datum and its properties. This paper proposes a factorial mixture prior for capturing latent properties, thereby adding structured compositionality to deep generative models. The prior treats a latent vector as belonging to Cartesian product of subspaces, each of which is quantized separately with a Gaussian mixture model. Some mixture components can be set to represent properties as observed random variables whenever labeled prope…
University of Amsterdam（阿姆斯特丹大学）；DeepMind（深度思维）；Georgia Institute of Technology（佐治亚理工学院）；Facebook AI Research（Facebook人工智能研究院）
We introduce Compositional Imitation Learning and Execution (CompILE): a framework for learning reusable, variable-length segments of hierarchically-structured behavior from demonstration data. CompILE uses a novel unsupervised, fully-differentiable sequence segmentation module to learn latent encodings of sequential data that can be re-composed and executed to perform new tasks. Once trained, our model generalizes to sequences of longer length and from environment instances not seen during training. We evaluate CompILE in a challenging 2D multi-task environment and a continuous control task, …
Stanford University（斯坦福大学）；The University of Texas at Austin（德克萨斯大学奥斯汀分校）；Nvidia（英伟达）；California Institute of Technology（加州理工学院）；University of Toronto（多伦多大学）；Vector Institute（向量研究所）
Real-world tasks often exhibit a compositional structure that contains a sequence of simpler sub-tasks. For instance, opening a door requires reaching, grasping, rotating, and pulling the door knob. Such compositional tasks require an agent to reason about the sub-task at hand while orchestrating global behavior accordingly. This can be cast as an online task inference problem, where the current task identity, represented by a context variable, is estimated from the agent's past experiences with probabilistic inference. Previous approaches have employed simple latent distributions, e.g., Gauss…
In this paper we provide a conceptual overview of latent variable models within a probabilistic modeling framework, an overview that emphasizes the compositional nature and the interconnectedness of the seemingly disparate models commonly encountered in statistical practice.
ETH Zurich（苏黎世联邦理工学院）；Apple Switzerland（苹果瑞士公司）；Google Research（谷歌研究院）
We present a generative model for complex free-form structures such as stroke-based drawing tasks. While previous approaches rely on sequence-based models for drawings of basic objects or handwritten text, we propose a model that treats drawings as a collection of strokes that can be composed into complex structures such as diagrams (e.g., flow-charts). At the core of the approach lies a novel autoencoder that projects variable-length strokes into a latent space of fixed dimension. This representation space allows a relational model, operating in latent space, to better capture the relationshi…
Nonnegative matrix factorizations and related compositional models: Equivalence, identifiability, and an application on the grain-size analysis of sediments
Hangzhou Dianzi University, China（杭州电子科技大学）；Utrecht University, the Netherlands and University of Southampton, UK（乌得勒支大学和南安普顿大学）
Generative Adversarial Networks (GANs) can produce images of remarkable complexity and realism but are generally structured to sample from a single latent source ignoring the explicit spatial interaction between multiple entities that could be present in a scene. Capturing such complex interactions between different objects in the world, including their relative scaling, spatial layout, occlusion, or viewpoint transformation is a challenging problem. In this work, we propose a novel self-consistent Composition-by-Decomposition (CoDe) network to compose a pair of objects. Given object images fr…
Analyzing multivariate time series data is important to predict future events and changes of complex systems in finance, manufacturing, and administrative decisions. The expressiveness power of Gaussian Process (GP) regression methods has been significantly improved by compositional covariance structures. In this paper, we present a new GP model which naturally handles multiple time series by placing an Indian Buffet Process (IBP) prior on the presence of shared kernels. Our selective covariance structure decomposition allows exploiting shared parameters over a set of multiple, selected time s…
