Multivariate, heteroscedastic errors complicate statistical inference in many large-scale denoising problems. Empirical Bayes is attractive in such settings, but standard parametric approaches rest on assumptions about the form of the prior distribution which can be hard to justify and which introduce unnecessary tuning parameters. We extend the nonparametric maximum likelihood estimator (NPMLE) for Gaussian location mixture densities to allow for multivariate, heteroscedastic errors. NPMLEs estimate an arbitrary prior by solving an infinite-dimensional, convex optimization problem; we show that this convex optimization problem can be tractably approximated by a finite-dimensional version.
The empirical Bayes posterior means based on an NPMLE have low regret, meaning they closely target the oracle posterior means one would compute with the true prior in hand. We prove an oracle inequality implying that the empirical Bayes estimator performs at nearly the optimal level (up to logarithmic factors) for denoising without prior knowledge. We provide finite-sample bounds on the average Hellinger accuracy of an NPMLE for estimating the marginal densities of the observations. We also demonstrate the adaptive and nearly-optimal properties of NPMLEs for deconvolution. We apply our method to two denoising problems in astronomy, constructing a fully data-driven color-magnitude diagram of 1.4 million stars in the Milky Way and investigating the distribution of 19 chemical abundance ratios for 27 thousand stars in the red clump. We also apply our method to hierarchical linear models, illustrating the advantages of nonparametric shrinkage of regression coefficients on an education data set and on a microarray data set.
This paper concerns the estimation of the regression function at a given point in nonparametric heteroscedastic models with Gaussian noise or with noise having unknown distribution. In the two cases an asymptotically efficient kernel estimator is constructed for the minimax absolute error risk.
An adaptive nonparametric estimation procedure is constructed for heteroscedastic regression when the noise variance depends on the unknown regression. A non-asymptotic upper bound for a quadratic risk (oracle inequality) is obtained
An adaptive nonparametric estimation procedure is constructed for the estimation problem of heteroscedastic regression when the noise variance depends on the unknown regression. A non-asymptotic upper bound for a quadratic risk (an oracle inequality) is constructed.
The paper deals with asymptotic properties of the adaptive procedure proposed in the author paper (2007) for estimation of unknown nonparametric regression. We prove that this procedure is asymptotically efficient for a quadratic risk. It means that the asymptotic quadratic risk for this procedure coincides with a sharp lower bound.
In this paper an autoregressive time series model with conditional heteroscedasticity is considered, where both conditional mean and conditional variance function are modeled nonparametrically. A test for the model assumption of independence of innovations from past time series values is suggested. The test is based on an weighted $L^2$-distance of empirical characteristic functions. The asymptotic distribution under the null hypothesis of independence is derived and consistency against fixed alternatives is shown. A smooth autoregressive residual bootstrap procedure is suggested and its perfo…
The paper is devoted to the problem of estimation of a univariate component in a heteroscedastic nonparametric multiple regression under the mean integrated squared error (MISE) criteria. The aim is to understand how the scale function should be used for estimation of the univariate component. It is known that the scale function does not affect the rate of the MISE convergence, and as a result sharp constants are explored. The paper begins with developing a sharp-minimax theory for a pivotal model $Y=f(X)+σ(X,\mathbf{Z})\varepsilon$, where $\varepsilon$ is standard normal and independent of th…
University of Pennsylvania（宾夕法尼亚大学）；Temple University（天普大学）；University of Michigan（密歇根大学）
Large-scale modern data often involves estimation and testing for high-dimensional unknown parameters. It is desirable to identify the sparse signals, ``the needles in the haystack'', with accuracy and false discovery control. However, the unprecedented complexity and heterogeneity in modern data structure require new machine learning tools to effectively exploit commonalities and to robustly adjust for both sparsity and heterogeneity. In addition, estimates for high-dimensional parameters often lack uncertainty quantification. In this paper, we propose a novel Spike-and-Nonparametric mixture …
We investigate function estimation in nonparametric regression models with random design and heteroscedastic correlated noise. Adaptive properties of warped wavelet nonlinear approximations are studied over a wide range of Besov scales, $f\in\mathcal{B}^s_{π,r}$, and for a variety of $L^p$ error measures. We consider error distributions with Long-Range-Dependence parameter $α,0<α\leq1$; heteroscedasticity is modeled with a design dependent function $σ$. We prescribe a tuning paradigm, under which warped wavelet estimation achieves partial or full adaptivity results with the rates that are show…
In this paper we consider a heteroscedastic transformation model, where the transformation belongs to a parametric family of monotone transformations, the regression and variance function are modelled nonparametrically and the error is independent of the multidimensional covariates. In this model, we first consider the estimation of the unknown components of the model, namely the transformation parameter, regression and variance function and the distribution of the error. We show the asymptotic normality of the proposed estimators. Second, we propose tests for the validity of the model, and es…
The Bayesian nonparametric inference and Dirichlet process are popular tools in statistical methodologies. In this paper, we employ the Dirichlet process in hypothesis testing to propose a Bayesian nonparametric chi-squared goodness-of-fit test. In our Bayesian nonparametric approach, we consider the Dirichlet process as the prior for the distribution of data and carry out the test based on the Kullback-Leibler distance between the updated Dirichlet process and the hypothesized distribution F0. We prove that this distance asymptotically converges to the same chi-squared distribution as the chi…
This paper discusses asymptotic distributions of various estimators of the underlying parameters in some regression models with long memory (LM) Gaussian design and nonparametric heteroscedastic LM moving average errors. In the simple linear regression model, the first-order asymptotic distribution of the least square estimator of the slope parameter is observed to be degenerate. However, in the second order, this estimator is $n^{1/2}$-consistent and asymptotically normal for $h+H<3/2$; nonnormal otherwise, where $h$ and $H$ are LM parameters of design and error processes, respectively. The f…
A Bayesian nonparametric estimator to entropy is proposed. The derivation of the new estimator relies on using the Dirichlet process and adapting the well-known frequentist estimators of Vasicek (1976) and Ebrahimi, Pflughoeft and Soofi (1994). Several theoretical properties, such as consistency, of the proposed estimator are obtained. The quality of the proposed estimator has been investigated through several examples, in which it exhibits excellent performance.
An empirical Bayes problem has an unknown prior to be estimated from data. The predictive recursion (PR) algorithm provides fast nonparametric estimation of mixing distributions and is ideally suited for empirical Bayes applications. This paper presents a general notion of empirical Bayes asymptotic optimality, and it is shown that PR-based procedures satisfy this property under certain conditions. As an application, the problem of in-season prediction of baseball batting averages is considered. There the PR-based empirical Bayes rule performs well in terms of prediction error and ability to c…
This paper deals with the nonparametric estimation in heteroscedastic regression $ Y_i=f(X_i)+ξ_i, \: i=1,...,n $, with incomplete information, i.e. each real random variable $ ξ_i $ has a density $ g_{i} $ which is unknown to the statistician. The aim is to estimate the regression function $ f $ at a given point. Using a local polynomial fitting from M-estimator denoted $ \hat f^h $ and applying Lepski's procedure for the bandwidth selection, we construct an estimator $ \hat f^{\hat h} $ which is adaptive over the collection of isotropic Hölder classes. In particular, we establish new exponen…
The estimation of a log-concave density on $\mathbb{R}$ is a canonical problem in the area of shape-constrained nonparametric inference. We present a Bayesian nonparametric approach to this problem based on an exponentiated Dirichlet process mixture prior and show that the posterior distribution converges to the log-concave truth at the (near-) minimax rate in Hellinger distance. Our proof proceeds by establishing a general contraction result based on the log-concave maximum likelihood estimator that prevents the need for further metric entropy calculations. We also present two computationally…
In recent years, Bayesian nonparametric statistics has gathered extraordinary attention. Nonetheless, a relatively little amount of work has been expended on Bayesian nonparametric hypothesis testing. In this paper, a novel Bayesian nonparametric approach to the two-sample problem is established. Precisely, given two samples $\mathbf{X}=X_1,\ldots,X_{m_1}$ $\overset {i.i.d.} \sim F$ and $\mathbf{Y}=Y_1,\ldots,Y_{m_2} \overset {i.i.d.} \sim G$, with $F$ and $G$ being unknown continuous cumulative distribution functions, we wish to test the null hypothesis $\mathcal{H}_0:~F=G$. The method is bas…
Given a nonparametric Hidden Markov Model (HMM) with two states, the question of constructing efficient multiple testing procedures is considered, treating one of the states as an unknown null hypothesis. A procedure is introduced, based on nonparametric empirical Bayes ideas, that controls the False Discovery Rate (FDR) at a user--specified level. Guarantees on power are also provided, in the form of a control of the true positive rate. One of the key steps in the construction requires supremum--norm convergence of preliminary estimators of the emission densities of the HMM. We provide the ex…
The paper deals with asymptotic properties of the adaptive procedure proposed in the author paper, 2007, for estimating a unknown nonparametric regression. We prove that this procedure is asymptotically efficient for a quadratic risk, i.e. the asymptotic quadratic risk for this procedure coincides with the Pinsker constant which gives a sharp lower bound for the quadratic risk over all possible estimators.
The paper deals with asymptotic properties of the adaptive procedure proposed in the author paper, 2007, for estimating an unknown nonparametric regression. %\cite{GaPe1}. We prove that this procedure is asymptotically efficient for a quadratic risk, i.e. the asymptotic quadratic risk for this procedure coincides with the Pinsker constant which gives a sharp lower bound for the quadratic risk over all possible estimates
Completely nonparametric transformation models with heteroscedastic errors are considered. Despite their flexibility, such models have rarely been used so far, since estimators of the model components have been missing and even identification of such models has not been clear until very recently. The results of Kloodt (2020) are used to construct the first two estimators of the transformation function in these models. While the first estimator converges to the true transformation function at a parametric rate, the second estimator can be obtained by an explicit formula and is less computationa…
Tsallis entropy is a generalized diversity index first derived in Patil and Taillie (1982) and then rediscovered in community ecology by Keylock (2005). Bayesian nonparametric estimation of Shannon entropy and Simpson's diversity under uniform and symmetric Dirichlet priors has been already advocated as an alternative to maximum likelihood estimation based on frequency counts, which is negatively biased in the undersampled regime. Here we present a fully general Bayesian nonparametric estimation of the whole class of Tsallis diversity indices under Gnedin-Pitman priors, a large family of rando…
We consider a wavelet thresholding approach to adaptive variance function estimation in heteroscedastic nonparametric regression. A data-driven estimator is constructed by applying wavelet thresholding to the squared first-order differences of the observations. We show that the variance function estimator is nearly optimally adaptive to the smoothness of both the mean and variance functions. The estimator is shown to achieve the optimal adaptive rate of convergence under the pointwise squared error simultaneously over a range of smoothness classes. The estimator is also adaptively within a log…
Empirical Bayes Method for Large-Scale Multiple Testing with Heteroscedastic Errors
Seoul National University（首尔大学）；Davidson College（戴维森学院）；University of Maryland at Baltimore County（马里兰大学巴尔的摩县分校）；Keio University（庆应义塾大学）；University of Texas at Arlington（德克萨斯大学阿灵顿分校）
We investigate nonparametric regression methods based on spatial depth and quantiles when the response and the covariate are both functions. As in classical quantile regression for finite dimensional data, regression techniques developed here provide insight into the influence of the functional covariate on different parts, like the center as well as the tails, of the conditional distribution of the functional response. Depth and quantile based nonparametric regressions are useful to detect heteroscedasticity in functional regression. We derive the asymptotic behaviour of nonparametric depth a…
In an empirical Bayes analysis, we use data from repeated sampling to imitate inferences made by an oracle Bayesian with extensive knowledge of the data-generating distribution. Existing results provide a comprehensive characterization of when and why empirical Bayes point estimates accurately recover oracle Bayes behavior. In this paper, we develop flexible and practical confidence intervals that provide asymptotic frequentist coverage of empirical Bayes estimands, such as the posterior mean or the local false sign rate. The coverage statements hold even when the estimands are only partially …
We propose a flexible and identifiable version of the two-groups model, motivated by hierarchical Bayes considerations, that features an empirical null and a semiparametric mixture model for the non-null cases. We use a computationally efficient predictive recursion marginal likelihood procedure to estimate the model parameters, even the nonparametric mixing distribution. This leads to a nonparametric empirical Bayes testing procedure, which we call PRtest, based on thresholding the estimated local false discovery rates. Simulations and real-data examples demonstrate that, compared to existing…
Mutual information is a well-known tool to measure the mutual dependence between variables. In this paper, a Bayesian nonparametric estimation of mutual information is established by means of the Dirichlet process and the $k$-nearest neighbor distance. As a direct outcome of the estimation, an easy-to-implement test of independence is introduced through the relative belief ratio. Several theoretical properties of the approach are presented. The procedure is investigated through various examples where the results are compared to its frequentist counterpart and demonstrate a good performance.
Nonparametric and adaptive modeling of dynamic seasonality and trend with heteroscedastic and dependent errors
National Yang-Ming University Hospital（阳明大学医院）；Institute of Hospital and Health Care Administration, National Yang-Ming University（阳明大学医院与卫生管理研究所）；Department of Mathematics, National Taiwan University（台湾大学数学系）；Department of Statistics, University of California, Berkeley（加州大学伯克利分校统计系）
We consider the estimation of a bounded regression function with nonparametric heteroscedastic noise and random design. We study the true and empirical excess risks of the least-squares estimator on finite-dimensional vector spaces. We give upper and lower bounds on these quantities that are nonasymptotic and optimal to first order, allowing the dimension to depend on sample size. These bounds show the equivalence between the true and empirical excess risks when, among other things, the least-squares estimator is consistent in sup-norm with the projection of the regression function onto the co…
We consider nonparametric Bayesian estimation and prediction for nonhomogeneous Poisson process models with unknown intensity functions. We propose a class of improper priors for intensity functions. Nonparametric Bayesian inference with kernel mixture based on the class improper priors is shown to be useful, although improper priors have not been widely used for nonparametric Bayes problems. Several theorems corresponding to those for finite-dimensional independent Poisson models hold for nonhomogeneous Poisson process models with infinite-dimensional parameter spaces. Bayesian estimation and…
Consider the problem of estimating a multivariate normal mean with a known variance matrix, which is not necessarily proportional to the identity matrix. The coordinates are shrunk directly in proportion to their variances in Efron and Morris' (J. Amer. Statist. Assoc. 68 (1973) 117-130) empirical Bayes approach, whereas inversely in proportion to their variances in Berger's (Ann. Statist. 4 (1976) 223-226) minimax estimators. We propose a new minimax estimator, by approximately minimizing the Bayes risk with a normal prior among a class of minimax estimators where the shrinkage direction is o…
A density estimation method in a Bayesian nonparametric framework is presented when recorded data are not coming directly from the distribution of interest, but from a length biased version. From a Bayesian perspective, efforts to computationally evaluate posterior quantities conditionally on length biased data were hindered by the inability to circumvent the problem of a normalizing constant. In this paper we present a novel Bayesian nonparametric approach to the length bias sampling problem which circumvents the issue of the normalizing constant. Numerical illustrations as well as a real dat…
This article focuses on the performance of Bayes estimators, in comparison with the MLE, in multinomial models with a relatively large number of cells. The prior for the Bayes estimator is taken to be the conjugate Dirichlet, i.e., the multivariate Beta, with exchangeable distributions over the coordinates, including the non-informative uniform distribution. The choice of the multinomial is motivated by its many applications in business and industry, but also by its use in providing a simple nonparametric estimator of an unknown distribution. It is striking that the Bayes procedure outperforms…
We propose a new, two-step empirical Bayes-type of approach for neural networks. We show in context of the nonparametric regression model that the procedure (up to a logarithmic factor) provides optimal recovery of the underlying functional parameter of interest and provides Bayesian credible sets with frequentist coverage guarantees. The approach requires fitting the neural network only once, hence it is substantially faster than Bootstrapping type approaches. We demonstrate the applicability of our method over synthetic data, observing good estimation properties and reliable uncertainty quan…
We consider heteroscedastic nonparametric regression models, when both the mean function and variance function are unknown and to be estimated with nonparametric approaches. We derive convergence rates of posterior distributions for this model with different priors, including splines and Gaussian process priors. The results are based on the general ones on the rates of convergence of posterior distributions for independent, non-identically distributed observations, and are established for both of the cases with random covariates, and deterministic covariates. We also illustrate that the result…
We study Bayes procedures for the problem of nonparametric drift estimation for one-dimensional, ergodic diffusion models from discrete-time, low-frequency data. We give conditions for posterior consistency and verify these conditions for concrete priors, including priors based on wavelet expansions.
This paper studies nonparametric estimation of parameters of multivariate Hawkes processes. We consider the Bayesian setting and derive posterior concentration rates. First rates are derived for L1-metrics for stochastic intensities of the Hawkes process. We then deduce rates for the L1-norm of interactions functions of the process. Our results are exemplified by using priors based on piecewise constant functions, with regular or random partitions and priors based on mixtures of Betas distributions. Numerical illustrations are then proposed with in mind applications for inferring functional co…
We develop a set of scalable Bayesian inference procedures for a general class of nonparametric regression models. Specifically, nonparametric Bayesian inferences are separately performed on each subset randomly split from a massive dataset, and then the obtained local results are aggregated into global counterparts. This aggregation step is explicit without involving any additional computation cost. By a careful partition, we show that our aggregated inference results obtain an oracle rule in the sense that they are equivalent to those obtained directly from the entire data (which are computa…
We consider inference in the scalar diffusion model $dX_t=b(X_t)dt+σ(X_t)dW_t$ with discrete data $(X_{jΔ_n})_{0\leq j \leq n}$, $n\to \infty,~Δ_n\to 0$ and periodic coefficients. For $σ$ given, we prove a general theorem detailing conditions under which Bayesian posteriors will contract in $L^2$-distance around the true drift function $b_0$ at the frequentist minimax rate (up to logarithmic factors) over Besov smoothness classes. We exhibit natural nonparametric priors which satisfy our conditions. Our results show that the Bayesian method adapts both to an unknown sampling regime and to unkn…
In the present paper, we derive lower bounds for the risk of the nonparametric empirical Bayes estimators. In order to attain the optimal convergence rate, we propose generalization of the linear empirical Bayes estimation method which takes advantage of the flexibility of the wavelet techniques. We present an empirical Bayes estimator as a wavelet series expansion and estimate coefficients by minimizing the prior risk of the estimator. As a result, estimation of wavelet coefficients requires solution of a well-posed low-dimensional sparse system of linear equations. The dimension of the syste…
Given a sample from a discretely observed multidimensional compound Poisson process, we study the problem of nonparametric estimation of its jump size density $r_0$ and intensity $λ_0$. We take a nonparametric Bayesian approach to the problem and determine posterior contraction rates in this context, which, under some assumptions, we argue to be optimal posterior contraction rates. In particular, our results imply the existence of Bayesian point estimates that converge to the true parameter pair $(r_0,λ_0)$ at these rates. To the best of our knowledge, construction of nonparametric density est…
We continue the investigation of Bernstein-von Mises theorems for nonparametric Bayes procedures from [Ann. Statist. 41 (2013) 1999-2028]. We introduce multiscale spaces on which nonparametric priors and posteriors are naturally defined, and prove Bernstein-von Mises theorems for a variety of priors in the setting of Gaussian nonparametric regression and in the i.i.d. sampling model. From these results we deduce several applications where posterior-based inference coincides with efficient frequentist procedures, including Donsker- and Kolmogorov-Smirnov theorems for the random posterior cumula…
We present an alternative approach to the Bayesian nonparametric analysis of conditional species richness under two-parameter Poisson Dirichlet priors. We rely on a known characterization by deletion of classes property and on results for Beta-Binomial distributions. Besides leading to simplified and much more direct proofs, our proposal provides a new scale mixture representation of the conditional asymptotic law.
Posterior contractions rates (PCRs) strengthen the notion of Bayesian consistency, quantifying the speed at which the posterior distribution concentrates on arbitrarily small neighborhoods of the true model, with probability tending to 1 or almost surely, as the sample size goes to infinity. Under the Bayesian nonparametric framework, a common assumption in the study of PCRs is that the model is dominated for the observations; that is, it is assumed that the posterior can be written through the Bayes formula. In this paper, we consider the problem of establishing PCRs in Bayesian nonparametric…
We propose a self-tuning $\sqrt{\mathrm {Lasso}}$ method that simultaneously resolves three important practical problems in high-dimensional regression analysis, namely it handles the unknown scale, heteroscedasticity and (drastic) non-Gaussianity of the noise. In addition, our analysis allows for badly behaved designs, for example, perfectly collinear regressors, and generates sharp bounds even in extreme cases, such as the infinite variance case and the noiseless case, in contrast to Lasso. We establish various nonasymptotic bounds for $\sqrt{\mathrm {Lasso}}$ including prediction norm rate …
In this paper we analyze the graph-based approach to semi-supervised learning under a manifold assumption. We adopt a Bayesian perspective and demonstrate that, for a suitable choice of prior constructed with sufficiently many unlabeled data, the posterior contracts around the truth at a rate that is minimax optimal up to a logarithmic factor. Our theory covers both regression and classification.
This paper studies the problem of testing whether a function is monotone from a nonparametric Bayesian perspective. Two new families of tests are constructed. The first uses constrained smoothing splines, together with a hierarchical stochastic-process prior that explicitly controls the prior probability of monotonicity. The second uses regression splines, together with two proposals for the prior over the regression coefficients. The finite-sample performance of the tests is shown via simulation to improve upon existing frequentist and Bayesian methods. The asymptotic properties of the Bayes …
A Bayesian nonparametric approach to the study of species diversity based on choosing a random discrete distribution as a prior model for the unknown relative abundances of species has been recently introduced in Lijoi et al. (2007, 2008). Explicit posterior predictive estimation of {\it species richness} has been obtained under priors belonging to the $α$-Gibbs class (Gnedin & Pitman, 2006). Here we focus on posterior estimation of {\it species evenness} which accounts for diversity in terms of the proximity to the situation of uniform distribution of the population into different species. We…
A simple Bayesian approach to nonparametric regression is described using fuzzy sets and membership functions. Membership functions are interpreted as likelihood functions for the unknown regression function, so that with the help of a reference prior they can be transformed to prior density functions. The unknown regression function is decomposed into wavelets and a hierarchical Bayesian approach is employed for making inferences on the resulting wavelet coefficients.
Given discrete time observations over a fixed time interval, we study a nonparametric Bayesian approach to estimation of the volatility coefficient of a stochastic differential equation. We postulate a histogram-type prior on the volatility with piecewise constant realisations on bins forming a partition of the time interval. The values on the bins are assigned an inverse Gamma Markov chain (IGMC) prior. Posterior inference is straightforward to implement via Gibbs sampling, as the full conditional distributions are available explicitly and turn out to be inverse Gamma. We also discuss in deta…
Models phrased though moment conditions are central to much of modern inference. Here these moment conditions are embedded within a nonparametric Bayesian setup. Handling such a model is not probabilistically straightforward as the posterior has support on a manifold. We solve the relevant issues, building new probability and computational tools using Hausdorff measures to analyze them on real and simulated data. These new methods which involve simulating on a manifold can be applied widely, including providing Bayesian analysis of quasi-likelihoods, linear and nonlinear regression, missing da…
