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arXiv 2106.04463eess.IVcs.CVcs.LG

用于泛化能力评估的多中心息肉检测与分割数据集

A multi-centre polyp detection and segmentation dataset for generalisability assessment

University of Leeds(利兹大学);University of Oxford(牛津大学);Oxford National Institute for Health Research Biomedical Research Centre(牛津国家健康研究所生物医学研究中心);SimulaMet(Simula大都会研究中心);UiT The Arctic University of Norway(挪威北极大学);Northwestern University(西北大学);Arab Academy for Science and Technology(阿拉伯科学技术学院);Veneto Institute of Oncology IOV-IRCCS(威尼托肿瘤研究所IOV-IRCCS);CRO Centro Riferimento Oncologico IRCCS Aviano(阿维亚诺CRO肿瘤参考中心IRCCS);University of Alexandria(亚历山大大学);Université de Versailles St-Quentin en Yvelines(凡尔赛圣康丁昂伊夫利纳大学);Université de Lorraine(洛林大学);CNRS(法国国家科学研究中心)
Sharib Ali, Debesh Jha, Noha Ghatwary, Stefano Realdon, Renato Cannizzaro, Osama E. Salem, Dominique Lamarque, Christian Daul, Michael A. Riegler, Kim V. Anonse… 展开作者

Sharib Ali, Debesh Jha, Noha Ghatwary, Stefano Realdon, Renato Cannizzaro, Osama E. Salem, Dominique Lamarque, Christian Daul, Michael A. Riegler, Kim V. Anonsen, Andreas Petlund, Pål Halvorsen, Jens Rittscher, Thomas de Lange, James E. East

AI总结:

本文提出了由六中心构建的息肉检测与像素级分割数据集PolypGen,包含超300名患者数据及3762个经专家验证的标签,旨在解决自动化方法泛化能力评估缺乏全面公开数据集的问题。

摘要:

结肠息肉是公认的癌症前体,可通过结肠镜检查识别。虽然大多数息肉是良性的,但息肉的数量、大小和表面结构与结肠癌的风险相关。目前已开发出多种自动化息肉检测与分割的方法。然而,主要问题在于这些方法未能在专门构建的大型多中心数据集上进行严格测试,原因之一是缺乏全面的公开数据集。因此,所开发的方法可能无法泛化到不同的人群数据集。为此,我们从六个不同的中心整理了一个包含超过300名患者的数据集。该数据集包含单帧和序列数据,带有3762个标注的息肉标签,并由六位资深胃肠病学家验证了息肉边界的精确描绘。据我们所知,这是由计算科学家和专家胃肠病学家团队整理的最全面的检测和像素级分割数据集(称为PolypGen)。本文提供了关于数据构建和标注策略、质量保证以及技术验证的见解。我们的数据集可从https://doi.org/10.7303/syn26376615下载。

英文摘要:

Polyps in the colon are widely known cancer precursors identified by colonoscopy. Whilst most polyps are benign, the polyp's number, size and surface structure are linked to the risk of colon cancer. Several methods have been developed to automate polyp detection and segmentation. However, the main issue is that they are not tested rigorously on a large multicentre purpose-built dataset, one reason being the lack of a comprehensive public dataset. As a result, the developed methods may not generalise to different population datasets. To this extent, we have curated a dataset from six unique centres incorporating more than 300 patients. The dataset includes both single frame and sequence data with 3762 annotated polyp labels with precise delineation of polyp boundaries verified by six senior gastroenterologists. To our knowledge, this is the most comprehensive detection and pixel-level segmentation dataset (referred to as \textit{PolypGen}) curated by a team of computational scientists and expert gastroenterologists. The paper provides insight into data construction and annotation strategies, quality assurance, and technical validation. Our dataset can be downloaded from \url{ https://doi.org/10.7303/syn26376615}.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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