PANACEA cough sound-based diagnosis of COVID-19 for the DiCOVA 2021 Challenge
EURECOM；University of Granada（格拉纳达大学）；Biometric Vox S.L.
Madhu R. Kamble, Jose A. Gonzalez-Lopez, Teresa Grau, Juan M. Espin, Lorenzo Cascioli, Yiqing Huang, Alejandro Gomez-Alanis, Jose Patino, Roberto Font, Antonio … 展开作者
Madhu R. Kamble, Jose A. Gonzalez-Lopez, Teresa Grau, Juan M. Espin, Lorenzo Cascioli, Yiqing Huang, Alejandro Gomez-Alanis, Jose Patino, Roberto Font, Antonio M. Peinado, Angel M. Gomez, Nicholas Evans, Maria A. Zuluaga, Massimiliano Todisco
The COVID-19 pandemic has led to the saturation of public health services worldwide. In this scenario, the early diagnosis of SARS-Cov-2 infections can help to stop or slow the spread of the virus and to manage the demand upon health services. This is especially important when resources are also being stretched by heightened demand linked to other seasonal diseases, such as the flu. In this context, the organisers of the DiCOVA 2021 challenge have collected a database with the aim of diagnosing COVID-19 through the use of coughing audio samples. This work presents the details of the automatic system for COVID-19 detection from cough recordings presented by team PANACEA. This team consists of researchers from two European academic institutions and one company: EURECOM (France), University of Granada (Spain), and Biometric Vox S.L. (Spain). We developed several systems based on established signal processing and machine learning methods. Our best system employs a Teager energy operator cepstral coefficients (TECCs) based frontend and Light gradient boosting machine (LightGBM) backend. The AUC obtained by this system on the test set is 76.31% which corresponds to a 10% improvement over the official baseline.
COVID-19 has resulted in over 100 million infections and caused worldwide lock downs due to its high transmission rate and limited testing options. Current diagnostic tests can be expensive, limited in availability, time-intensive and require risky in-person appointments. It has been established that symptomatic COVID-19 seriously impairs normal functioning of the respiratory system, thus affecting the coughing acoustics. The 2021 DiCOVA Challenge @ INTERSPEECH was designed to find scientific and engineering insights to the question by enabling participants to analyze an acoustic dataset gathe…
Samsung Research and Development Institute Bangalore（三星班加罗尔研发院）
The COVID-19 pandemic has resulted in more than 125 million infections and more than 2.7 million casualties. In this paper, we attempt to classify covid vs non-covid cough sounds using signal processing and deep learning methods. Air turbulence, the vibration of tissues, movement of fluid through airways, opening, and closure of glottis are some of the causes for the production of the acoustic sound signals during cough. Does the COVID-19 alter the acoustic characteristics of breath, cough, and speech sounds produced through the respiratory system? This is an open question waiting for answers.…
University of Augsburg（奥格斯堡大学）；Imperial College London（伦敦帝国理工学院）
Aiming to automatically detect COVID-19 from cough sounds, we propose a deep attentive multi-model fusion system evaluated on the Track-1 dataset of the DiCOVA 2021 challenge. Three kinds of representations are extracted, including hand-crafted features, image-from-audio-based deep representations, and audio-based deep representations. Afterwards, the best models on the three types of features are fused at both the feature level and the decision level. The experimental results demonstrate that the proposed attention-based fusion at the feature level achieves the best performance (AUC: 77.96%) …
The present work proposes a deep-learning-based approach for the classification of COVID-19 coughs from non-COVID-19 coughs and that can be used as a low-resource-based tool for early detection of the onset of such respiratory diseases. The proposed system uses the ResNet-50 architecture, a popularly known Convolutional Neural Network (CNN) for image recognition tasks, fed with the log-Mel spectrums of the audio data to discriminate between the two types of coughs. For the training and validation of the proposed deep learning model, this work utilizes the Track-1 dataset provided by the DiCOVA…
University of Augsburg（奥格斯堡大学）；Universitat Pompeu Fabra（庞培法布拉大学）；Joint Research Centre, European Commission（欧盟委员会联合研究中心）；Imperial College London（伦敦帝国理工学院）
This paper aims to automatically detect COVID-19 patients by analysing the acoustic information embedded in coughs. COVID-19 affects the respiratory system, and, consequently, respiratory-related signals have the potential to contain salient information for the task at hand. We focus on analysing the spectrogram representations of coughing samples with the aim to investigate whether COVID-19 alters the frequency content of these signals. Furthermore, this work also assesses the impact of gender in the automatic detection of COVID-19. To extract deep learnt representations of the spectrograms, …
The technology development for point-of-care tests (POCTs) targeting respiratory diseases has witnessed a growing demand in the recent past. Investigating the presence of acoustic biomarkers in modalities such as cough, breathing and speech sounds, and using them for building POCTs can offer fast, contactless and inexpensive testing. In view of this, over the past year, we launched the ``Coswara'' project to collect cough, breathing and speech sound recordings via worldwide crowdsourcing. With this data, a call for development of diagnostic tools was announced in the Interspeech 2021 as a spec…
Indian Institute of Science（印度科学研究院）；P. D. Hinduja Hospital（P. D. 欣杜贾医院）；KMC Hospital（KMC 医院）
The DiCOVA challenge aims at accelerating research in diagnosing COVID-19 using acoustics (DiCOVA), a topic at the intersection of speech and audio processing, respiratory health diagnosis, and machine learning. This challenge is an open call for researchers to analyze a dataset of sound recordings collected from COVID-19 infected and non-COVID-19 individuals for a two-class classification. These recordings were collected via crowdsourcing from multiple countries, through a website application. The challenge features two tracks, one focusing on cough sounds, and the other on using a collection…
The Second Diagnosis of COVID-19 using Acoustics (DiCOVA) Challenge aimed at accelerating the research in acoustics based detection of COVID-19, a topic at the intersection of acoustics, signal processing, machine learning, and healthcare. This paper presents the details of the challenge, which was an open call for researchers to analyze a dataset of audio recordings consisting of breathing, cough and speech signals. This data was collected from individuals with and without COVID-19 infection, and the task in the challenge was a two-class classification. The development set audio recordings we…
The current outbreak of a coronavirus, has quickly escalated to become a serious global problem that has now been declared a Public Health Emergency of International Concern by the World Health Organization. Infectious diseases know no borders, so when it comes to controlling outbreaks, timing is absolutely essential. It is so important to detect threats as early as possible, before they spread. After a first successful DiCOVA challenge, the organisers released second DiCOVA challenge with the aim of diagnosing COVID-19 through the use of breath, cough and speech audio samples. This work prese…
Imperial College London（伦敦帝国理工学院）；North Bristol NHS Trust（北布里斯托尔国民健康服务体系信托基金）；University of Augsburg（奥格斯堡大学）
We report on cross-running the recent COVID-19 Identification ResNet (CIdeR) on the two Interspeech 2021 COVID-19 diagnosis from cough and speech audio challenges: ComParE and DiCOVA. CIdeR is an end-to-end deep learning neural network originally designed to classify whether an individual is COVID-positive or COVID-negative based on coughing and breathing audio recordings from a published crowdsourced dataset. In the current study, we demonstrate the potential of CIdeR at binary COVID-19 diagnosis from both the COVID-19 Cough and Speech Sub-Challenges of INTERSPEECH 2021, ComParE and DiCOVA. C…
COVID-19 Diagnosis from Cough Acoustics using ConvNets and Data Augmentation
Electronics and Communication Engineering Department, National Institute of Technology, Silchar, India 788010（电子与通信工程系，印度尼特理工学院，西尔CHAR，印度788010）；Computer Science and Engineering Department, National Institute of Technology,Silchar, India 788010（计算机科学与工程系，印度尼特理工学院，西尔CHAR，印度788010）；Software Engineering Department, Paytm, Noida, India 110096（软件工程系，Paytm，印度诺伊达，印度110096）；Mathematics in Computer Science, University of Science of HCMC, Ho Chi Minh City, Vietnam 700000（计算机科学中的数学，河内科学大学，胡志明市，越南700000）
University of Science and Technology of China (USTC)（中国科学技术大学）；Institute of Acoustics, Chinese Academy of Sciences（中国科学院声学研究所）
In this work, we propose a bi-directional long short-term memory (BiLSTM) network based COVID-19 detection method using breath/speech/cough signals. By using the acoustic signals to train the network, respectively, we can build individual models for three tasks, whose parameters are averaged to obtain an average model, which is then used as the initialization for the BiLSTM model training of each task. This initialization method can significantly improve the performance on the three tasks, which surpasses the official baseline results. Besides, we also utilize a public pre-trained model wav2ve…
Institute of Information and Decision Technology, Dalian University of Technology（大连理工大学信息与决策技术研究所）；Institute of Data Science, National University of Singapore（新加坡国立大学数据科学研究所）
In this paper, we propose a deep residual network-based method, namely the DiCOVA-Net, to identify COVID-19 infected patients based on the acoustic recording of their coughs. Since there are far more healthy people than infected patients, this classification problem faces the challenge of imbalanced data. To improve the model's ability to recognize minority class (the infected patients), we introduce data augmentation and cost-sensitive methods into our model. Besides, considering the particularity of this task, we deploy some fine-tuning techniques to adjust the pre-training ResNet50. Further…
University of Augsburg（奥格斯堡大学）；Universitat Pompeu Fabra（庞培法布拉大学）；Joint Research Centre, European Commission（欧盟委员会联合研究中心）；Imperial College London（帝国理工学院）
This work presents an outer product-based approach to fuse the embedded representations generated from the spectrograms of cough, breath, and speech samples for the automatic detection of COVID-19. To extract deep learnt representations from the spectrograms, we compare the performance of a CNN trained from scratch and a ResNet18 architecture fine-tuned for the task at hand. Furthermore, we investigate whether the patients' sex and the use of contextual attention mechanisms is beneficial. Our experiments use the dataset released as part of the Second Diagnosing COVID-19 using Acoustics (DiCOVA…
FPT Software Company Limited（FPT软件有限公司）；Austrian Institute of Technology（奥地利技术研究所）；University of Essex（埃塞克斯大学）；University of Glasgow（格拉斯哥大学）
This paper presents a deep learning framework for detecting COVID-19 positive subjects from their cough sounds. In particular, the proposed approach comprises two main steps. In the first step, we generate a feature representing the cough sound by combining an embedding extracted from a pre-trained model and handcrafted features extracted from draw audio recording, referred to as the front-end feature extraction. Then, the combined features are fed into different back-end classification models for detecting COVID-19 positive subjects in the second step. Our experiments on the Track-2 dataset o…
Verisk Analytics Inc.（维睿斯克分析公司）；Indian Institute of Science（印度科学学院）
This report describes the system used for detecting COVID-19 positives using three different acoustic modalities, namely speech, breathing, and cough in the second DiCOVA challenge. The proposed system is based on the combination of 4 different approaches, each focusing more on one aspect of the problem, and reaches the blind test AUCs of 86.41, 77.60, and 84.55, in the breathing, cough, and speech tracks, respectively, and the AUC of 85.37 in the fusion of these three tracks.
Saw Swee Hock School of Public Health, National University of Singapore（新加坡国立大学苏瑞福公共卫生学院）；National University Health System, National University of Singapore（新加坡国立大学国立大学医疗系统）；National University Hospital, Singapore（新加坡国立大学医院）；Yong Loo Lin Medical School, National University of Singapore（新加坡国立大学杨潞龄医学院）；Institute of Data Science, National University of Singapore（新加坡国立大学数据科学研究所）
We suggested a unified system with core components of data augmentation, ImageNet-pretrained ResNet-50, cost-sensitive loss, deep ensemble learning, and uncertainty estimation to quickly and consistently detect COVID-19 using acoustic evidence. To increase the model's capacity to identify a minority class, data augmentation and cost-sensitive loss are incorporated (infected samples). In the COVID-19 detection challenge, ImageNet-pretrained ResNet-50 has been found to be effective. The unified framework also integrates deep ensemble learning and uncertainty estimation to integrate predictions f…
University of Essex（埃塞克斯大学）；Austrian Institute of Technology（奥地利技术研究所）；FPT Software Company Limited（FPT软件有限公司）
This paper evaluates a wide range of audio-based deep learning frameworks applied to the breathing, cough, and speech sounds for detecting COVID-19. In general, the audio recording inputs are transformed into low-level spectrogram features, then they are fed into pre-trained deep learning models to extract high-level embedding features. Next, the dimension of these high-level embedding features are reduced before finetuning using Light Gradient Boosting Machine (LightGBM) as a back-end classification. Our experiments on the Second DiCOVA Challenge achieved the highest Area Under the Curve (AUC…
