Few-shot relation extraction (FSRE) is of great importance in long-tail distribution problem, especially in special domain with low-resource data. Most existing FSRE algorithms fail to accurately classify the relations merely based on the information of the sentences together with the recognized entity pairs, due to limited samples and lack of knowledge. To address this problem, in this paper, we proposed a novel entity CONCEPT-enhanced FEw-shot Relation Extraction scheme (ConceptFERE), which introduces the inherent concepts of entities to provide clues for relation prediction and boost the relations classification performance. Firstly, a concept-sentence attention module is developed to select the most appropriate concept from multiple concepts of each entity by calculating the semantic similarity between sentences and concepts. Secondly, a self-attention based fusion module is presented to bridge the gap of concept embedding and sentence embedding from different semantic spaces. Extensive experiments on the FSRE benchmark dataset FewRel have demonstrated the effectiveness and the superiority of the proposed ConceptFERE scheme as compared to the state-of-the-art baselines. Code is available at https://github.com/LittleGuoKe/ConceptFERE.
National University of Singapore（新加坡国立大学）；University of Southern California（南加州大学）；Nanyang Technological University（南洋理工大学）；Alibaba Group（阿里巴巴集团）
Recent literature focuses on utilizing the entity information in the sentence-level relation extraction (RE), but this risks leaking superficial and spurious clues of relations. As a result, RE still suffers from unintended entity bias, i.e., the spurious correlation between entity mentions (names) and relations. Entity bias can mislead the RE models to extract the relations that do not exist in the text. To combat this issue, some previous work masks the entity mentions to prevent the RE models from overfitting entity mentions. However, this strategy degrades the RE performance because it los…
University of British Columbia（不列颠哥伦比亚大学）；Curai（Curai公司）；Vatic Investments（Vatic投资公司）
Medical entity span extraction and linking are critical steps for many healthcare NLP tasks. Most existing entity extraction methods either have a fixed vocabulary of medical entities or require span annotations. In this paper, we propose a method for linking an open set of entities that does not require any span annotations. Our method, Open Set Label Attention Transformer (OSLAT), uses the label-attention mechanism to learn candidate-entity contextualized text representations. We find that OSLAT can not only link entities but is also able to implicitly learn spans associated with entities. W…
Previous works on key information extraction from visually rich documents (VRDs) mainly focus on labeling the text within each bounding box (i.e., semantic entity), while the relations in-between are largely unexplored. In this paper, we adapt the popular dependency parsing model, the biaffine parser, to this entity relation extraction task. Being different from the original dependency parsing model which recognizes dependency relations between words, we identify relations between groups of words with layout information instead. We have compared different representations of the semantic entity…
Recently, considerable literature has grown up around the theme of few-shot named entity recognition (NER), but little published benchmark data specifically focused on the practical and challenging task. Current approaches collect existing supervised NER datasets and re-organize them to the few-shot setting for empirical study. These strategies conventionally aim to recognize coarse-grained entity types with few examples, while in practice, most unseen entity types are fine-grained. In this paper, we present Few-NERD, a large-scale human-annotated few-shot NER dataset with a hierarchy of 8 coa…
To solve the problem of redundant information and overlapping relations of the entity and relation extraction model, we propose a joint extraction model. This model can directly extract multiple pairs of related entities without generating unrelated redundant information. We also propose a recurrent neural network named Encoder-LSTM that enhances the ability of recurrent units to model sentences. Specifically, the joint model includes three sub-modules: the Named Entity Recognition sub-module consisted of a pre-trained language model and an LSTM decoder layer, the Entity Pair Extraction sub-mo…
Recently, prompt-based learning for pre-trained language models has succeeded in few-shot Named Entity Recognition (NER) by exploiting prompts as task guidance to increase label efficiency. However, previous prompt-based methods for few-shot NER have limitations such as a higher computational complexity, poor zero-shot ability, requiring manual prompt engineering, or lack of prompt robustness. In this work, we address these shortcomings by proposing a new prompt-based learning NER method with Question Answering (QA), called QaNER. Our approach includes 1) a refined strategy for converting NER …
The University of Western Australia（西澳大利亚大学）；The University of Melbourne（墨尔本大学）
Entity extraction is an important task in text mining and natural language processing. A popular method for entity extraction is by comparing substrings from free text against a dictionary of entities. In this paper, we present several techniques as a post-processing step for improving the effectiveness of the existing entity extraction technique. These techniques utilise models trained with the web-scale corpora which makes our techniques robust and versatile. Experiments show that our techniques bring a notable improvement on efficiency and effectiveness.
Fraunhofer IAIS（弗劳恩霍夫智能分析与信息系统研究所）；University of Bonn（波恩大学）；PricewaterhouseCoopers GmbH（普华永道有限责任公司）
We present KPI-BERT, a system which employs novel methods of named entity recognition (NER) and relation extraction (RE) to extract and link key performance indicators (KPIs), e.g. "revenue" or "interest expenses", of companies from real-world German financial documents. Specifically, we introduce an end-to-end trainable architecture that is based on Bidirectional Encoder Representations from Transformers (BERT) combining a recurrent neural network (RNN) with conditional label masking to sequentially tag entities before it classifies their relations. Our model also introduces a learnable RNN-b…
Karlsruhe Institute of Technology（卡尔斯鲁厄理工学院）；FZI Research Center for Information Technology（FZI信息技术研究中心）
In this paper, we present an end-to-end joint entity and relation extraction approach based on transformer-based language models. We apply the model to the task of linking mathematical symbols to their descriptions in LaTeX documents. In contrast to existing approaches, which perform entity and relation extraction in sequence, our system incorporates information from relation extraction into entity extraction. This means that the system can be trained even on data sets where only a subset of all valid entity spans is annotated. We provide an extensive evaluation of the proposed system and its …
Understanding the semantic meaning of content on the web through the lens of entities and concepts has many practical advantages. However, when building large-scale entity extraction systems, practitioners are facing unique challenges involving finding the best ways to leverage the scale and variety of data available on internet platforms. We present learnings from our efforts in building an entity extraction system for multiple document types at large scale using multi-modal Transformers. We empirically demonstrate the effectiveness of multi-lingual, multi-task and cross-document type learnin…
Graph Neural Network-Based Entity Extraction and Relationship Reasoning in Complex Knowledge Graphs
Shanghai Jiao Tong University（上海交通大学）；San Francisco State University（旧金山州立大学）；Stevens Institute of Technology（史蒂文斯理工学院）；New York University（纽约大学）；Tulane University（杜兰大学）；Columbia University（哥伦比亚大学）
DiZiNER: Disagreement-guided Instruction Refinement via Pilot Annotation Simulation for Zero-shot Named Entity Recognition
Seltasquare Seoul, Korea（首尔韩国Seltasquare）；Seoul National University College of Medicine（首尔国立大学医学院）；Biomedical Research Institute, Seoul National University Hospital（首尔国立大学医院生物医学研究所）
Medical entity extraction (EE) is a standard procedure used as a first stage in medical texts processing. Usually Medical EE is a two-step process: named entity recognition (NER) and named entity normalization (NEN). We propose a novel method of doing medical EE from electronic health records (EHR) as a single-step multi-label classification task by fine-tuning a transformer model pretrained on a large EHR dataset. Our model is trained end-to-end in an distantly supervised manner using targets automatically extracted from medical knowledge base. We show that our model learns to generalize for …
Entities, as the essential elements in relation extraction tasks, exhibit certain structure. In this work, we formulate such structure as distinctive dependencies between mention pairs. We then propose SSAN, which incorporates these structural dependencies within the standard self-attention mechanism and throughout the overall encoding stage. Specifically, we design two alternative transformation modules inside each self-attention building block to produce attentive biases so as to adaptively regularize its attention flow. Our experiments demonstrate the usefulness of the proposed entity struc…
RheinMain University of Applied Sciences（莱茵美因应用科学大学）
We introduce SpERT, an attention model for span-based joint entity and relation extraction. Our key contribution is a light-weight reasoning on BERT embeddings, which features entity recognition and filtering, as well as relation classification with a localized, marker-free context representation. The model is trained using strong within-sentence negative samples, which are efficiently extracted in a single BERT pass. These aspects facilitate a search over all spans in the sentence. In ablation studies, we demonstrate the benefits of pre-training, strong negative sampling and localized context…
The knowledge extraction task is to extract triple relations (head entity-relation-tail entity) from unstructured text data. The existing knowledge extraction methods are divided into "pipeline" method and joint extraction method. The "pipeline" method is to separate named entity recognition and entity relationship extraction and use their own modules to extract them. Although this method has better flexibility, the training speed is slow. The learning model of joint extraction is an end-to-end model implemented by neural network to realize entity recognition and relationship extraction at the…
University of Michigan（密歇根大学）；Google Research（谷歌研究院）
We present the zero-shot entity linking task, where mentions must be linked to unseen entities without in-domain labeled data. The goal is to enable robust transfer to highly specialized domains, and so no metadata or alias tables are assumed. In this setting, entities are only identified by text descriptions, and models must rely strictly on language understanding to resolve the new entities. First, we show that strong reading comprehension models pre-trained on large unlabeled data can be used to generalize to unseen entities. Second, we propose a simple and effective adaptive pre-training s…
Extracting relationships and interactions between different biological entities is still an extremely challenging problem but has not received much attention as much as extraction in other generic domains. In addition to the lack of annotated data, low benchmarking is still a major reason for slow progress. In order to fill this gap, we compare multiple existing entity and relation extraction models over a recently introduced public dataset, BioRelEx of sentences annotated with biological entities and relations. Our straightforward benchmarking shows that span-based multi-task architectures li…
Hefei University of Technology（合肥工业大学）；Umeå University（于默奥大学）
While Named Entity Recognition (NER) is a widely studied task, making inferences of entities with only a few labeled data has been challenging, especially for entities with nested structures. Unlike flat entities, entities and their nested entities are more likely to have similar semantic feature representations, drastically increasing difficulties in classifying different entity categories in the few-shot setting. Although prior work has briefly discussed nested structures in the context of few-shot learning, to our best knowledge, this paper is the first one specifically dedicated to studyin…
The Joint Entity-Relation Extraction Model Based on Span and Interactive Fusion Representation for Chinese Medical Texts with Complex Semantics
School of Computer and Artificial Intelligence, Zhengzhou University（郑州大学计算机与人工智能学院）；Cooperative Innovation Center of Internet Healthcare, Zhengzhou University（郑州大学互联网医疗协同创新中心）；Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College（中国医学科学院北京协和医学院国家心血管病中心阜外医院）；Department of Geriatrics, Beijing Friendship Hospital, Capital Medical University（首都医科大学附属北京友谊医院老年医学科）
Multimodal named entity recognition and relation extraction (MNER and MRE) is a fundamental and crucial branch in information extraction. However, existing approaches for MNER and MRE usually suffer from error sensitivity when irrelevant object images incorporated in texts. To deal with these issues, we propose a novel Hierarchical Visual Prefix fusion NeTwork (HVPNeT) for visual-enhanced entity and relation extraction, aiming to achieve more effective and robust performance. Specifically, we regard visual representation as pluggable visual prefix to guide the textual representation for error …
We target on the document-level relation extraction in an end-to-end setting, where the model needs to jointly perform mention extraction, coreference resolution (COREF) and relation extraction (RE) at once, and gets evaluated in an entity-centric way. Especially, we address the two-way interaction between COREF and RE that has not been the focus by previous work, and propose to introduce explicit interaction namely Graph Compatibility (GC) that is specifically designed to leverage task characteristics, bridging decisions of two tasks for direct task interference. Our experiments are conducted…
Fine-tuning pre-trained language models has recently become a common practice in building NLP models for various tasks, especially few-shot tasks. We argue that under the few-shot setting, formulating fine-tuning closer to the pre-training objectives shall be able to unleash more benefits from the pre-trained language models. In this work, we take few-shot named entity recognition (NER) for a pilot study, where existing fine-tuning strategies are much different from pre-training. We propose a novel few-shot fine-tuning framework for NER, FFF-NER. Specifically, we introduce three new types of t…
Xian Jiaotong University（西安交通大学）；The University of Manchester（曼彻斯特大学）；East China University of Science and Technology（华东理工大学）；Zhejiang University（浙江大学）
Automatic or semi-automatic conversion of protocols specifying steps in performing a lab procedure into machine-readable format benefits biological research a lot. These noisy, dense, and domain-specific lab protocols processing draws more and more interests with the development of deep learning. This paper presents our teamwork on WNUT 2020 shared task-1: wet lab entity extract, that we conducted studies in several models, including a BiLSTM CRF model and a Bert case model which can be used to complete wet lab entity extraction. And we mainly discussed the performance differences of \textbf{B…
University of California, Los Angeles（加利福尼亚大学洛杉矶分校）
We study the problem of entity-relation extraction in the presence of symbolic domain knowledge. Such knowledge takes the form of an ontology defining relations and their permissible arguments. Previous approaches set out to integrate such knowledge in their learning approaches either through self-training, or through approximations that lose the precise meaning of the logical expressions. By contrast, our approach employs semantic loss which captures the precise meaning of a logical sentence through maintaining a probability distribution over all possible states, and guiding the model to solu…
RheinMain University of Applied Sciences（莱茵曼应用科学大学）
We present a joint model for entity-level relation extraction from documents. In contrast to other approaches - which focus on local intra-sentence mention pairs and thus require annotations on mention level - our model operates on entity level. To do so, a multi-task approach is followed that builds upon coreference resolution and gathers relevant signals via multi-instance learning with multi-level representations combining global entity and local mention information. We achieve state-of-the-art relation extraction results on the DocRED dataset and report the first entity-level end-to-end re…
Beijing Institute of Technology（北京理工大学）；Beijing Engineering Research Center of High Volume Language Information Processing and Cloud Computing Applications（海量语言信息处理与云计算应用北京市工程研究中心）
Joint entity and relation extraction is an essential task in natural language processing and knowledge graph construction. Existing approaches usually decompose the joint extraction task into several basic modules or processing steps to make it easy to conduct. However, such a paradigm ignores the fact that the three elements of a triple are interdependent and indivisible. Therefore, previous joint methods suffer from the problems of cascading errors and redundant information. To address these issues, in this paper, we propose a novel joint entity and relation extraction model, named OneRel, w…
Harbin Institute of Technology（哈尔滨工业大学）；Microsoft Research Asia（微软亚洲研究院）
Few-shot named entity recognition (NER) systems aim at recognizing novel-class named entities based on only a few labeled examples. In this paper, we present a decomposed meta-learning approach which addresses the problem of few-shot NER by sequentially tackling few-shot span detection and few-shot entity typing using meta-learning. In particular, we take the few-shot span detection as a sequence labeling problem and train the span detector by introducing the model-agnostic meta-learning (MAML) algorithm to find a good model parameter initialization that could fast adapt to new entity classes.…
How Fragile is Relation Extraction under Entity Replacements?
University of Southern California（南加州大学）；Meta；Hong Kong University of Science and Technology (Guangzhou)（香港科技大学（广州））；Amazon（亚马逊公司）；University of California, Davis（加州大学戴维斯分校）；University of California, Los Angeles（加州大学洛杉矶分校）；National University of Singapore（新加坡国立大学）
Compared with traditional sentence-level relation extraction, document-level relation extraction is a more challenging task where an entity in a document may be mentioned multiple times and associated with multiple relations. However, most methods of document-level relation extraction do not distinguish between mention-level features and entity-level features, and just apply simple pooling operation for aggregating mention-level features into entity-level features. As a result, the distinct semantics between the different mentions of an entity are overlooked. To address this problem, we propos…
Entity Decomposition with Filtering: A Zero-Shot Clinical Named Entity Recognition Framework
The Ohio State University（俄亥俄州立大学）；Translational Data Analytics Institute, The Ohio State University（俄亥俄州立大学转化数据分析研究所）；College of Pharmacy, The Ohio State University（俄亥俄州立大学药学院）
Improving Few-shot and Zero-shot Entity Linking with Coarse-to-Fine Lexicon-based Retriever
Harbin Institute of Technology (Shenzhen)（哈尔滨工业大学（深圳））；Guangdong Provincial Key Laboratory of Novel Security Intelligence Technologies（广东省新型安全智能技术重点实验室）；Central South University（中南大学）
Document-level Relation Extraction (RE) requires extracting relations expressed within and across sentences. Recent works show that graph-based methods, usually constructing a document-level graph that captures document-aware interactions, can obtain useful entity representations thus helping tackle document-level RE. These methods either focus more on the entire graph, or pay more attention to a part of the graph, e.g., paths between the target entity pair. However, we find that document-level RE may benefit from focusing on both of them simultaneously. Therefore, to obtain more comprehensive…
University of Massachusetts, Amherst（马萨诸塞大学阿默斯特分校）；Google Research（谷歌研究院）
This paper considers the problem of zero-shot entity linking, in which a link in the test time may not present in training. Following the prevailing BERT-based research efforts, we find a simple yet effective way is to expand the long-range sequence modeling. Unlike many previous methods, our method does not require expensive pre-training of BERT with long position embedding. Instead, we propose an efficient position embeddings initialization method called Embedding-repeat, which initializes larger position embeddings based on BERT-Base. On Wikia's zero-shot EL dataset, our method improves the…
Massachusetts Institute of Technology（麻省理工学院）；Massachusetts General Hospital（麻省总医院）
Clinical studies often require understanding elements of a patient's narrative that exist only in free text clinical notes. To transform notes into structured data for downstream use, these elements are commonly extracted and normalized to medical vocabularies. In this work, we audit the performance of and indicate areas of improvement for state-of-the-art systems. We find that high task accuracies for clinical entity normalization systems on the 2019 n2c2 Shared Task are misleading, and underlying performance is still brittle. Normalization accuracy is high for common concepts (95.3%), but mu…
Purdue University（普渡大学）；Microsoft（微软）；Georgia Institute of Technology（佐治亚理工学院）
In this work, we study the problem of named entity recognition (NER) in a low resource scenario, focusing on few-shot and zero-shot settings. Built upon large-scale pre-trained language models, we propose a novel NER framework, namely SpanNER, which learns from natural language supervision and enables the identification of never-seen entity classes without using in-domain labeled data. We perform extensive experiments on 5 benchmark datasets and evaluate the proposed method in the few-shot learning, domain transfer and zero-shot learning settings. The experimental results show that the propose…
In this paper, we address two different types of noise in information extraction models: noise from distant supervision and noise from pipeline input features. Our target tasks are entity typing and relation extraction. For the first noise type, we introduce multi-instance multi-label learning algorithms using neural network models, and apply them to fine-grained entity typing for the first time. This gives our models comparable performance with the state-of-the-art supervised approach which uses global embeddings of entities. For the second noise type, we propose ways to improve the integrati…
Shanghai Jiao Tong University（上海交通大学）；ByteDance AI Lab（字节跳动人工智能实验室）；East China Normal University（华东师范大学）
Many joint entity relation extraction models setup two separated label spaces for the two sub-tasks (i.e., entity detection and relation classification). We argue that this setting may hinder the information interaction between entities and relations. In this work, we propose to eliminate the different treatment on the two sub-tasks' label spaces. The input of our model is a table containing all word pairs from a sentence. Entities and relations are represented by squares and rectangles in the table. We apply a unified classifier to predict each cell's label, which unifies the learning of two …
We describe a named entity tagging system that requires minimal linguistic knowledge and can be applied to more target languages without substantial changes. The system is based on the ideas of the Brill's tagger which makes it really simple. Using supervised machine learning, we construct a series of automatons (or transducers) in order to tag a given text. The final model is composed entirely of automatons and it requires a lineal time for tagging. It was tested with the Spanish data set provided in the CoNLL-$2002$ attaining an overall $F_{β= 1}$ measure of $60\%.$ Also, we present an algor…
School of Computer Science and Technology, Soochow University（苏州大学计算机科学与技术学院）；Collaborative Innovation Center of Novel Software Technology and Industrialization（新型软件技术与产业化协同创新中心）；Alibaba Group（阿里巴巴集团）；School of Computer Science and Technology, Heilongjiang University（黑龙江大学计算机科学与技术学院）
Distant supervised relation extraction is an efficient approach to scale relation extraction to very large corpora, and has been widely used to find novel relational facts from plain text. Recent studies on neural relation extraction have shown great progress on this task via modeling the sentences in low-dimensional spaces, but seldom considered syntax information to model the entities. In this paper, we propose to learn syntax-aware entity embedding for neural relation extraction. First, we encode the context of entities on a dependency tree as sentence-level entity embedding based on tree-G…
Facebook AI Research（Facebook人工智能研究（Facebook AI Research））；University College London（伦敦大学学院）；Ecole Polytechnique Federale de Lausanne（洛桑联邦理工学院）
This paper introduces a conceptually simple, scalable, and highly effective BERT-based entity linking model, along with an extensive evaluation of its accuracy-speed trade-off. We present a two-stage zero-shot linking algorithm, where each entity is defined only by a short textual description. The first stage does retrieval in a dense space defined by a bi-encoder that independently embeds the mention context and the entity descriptions. Each candidate is then re-ranked with a cross-encoder, that concatenates the mention and entity text. Experiments demonstrate that this approach is state of t…
