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arXiv 2103.11713eess.IVcs.CV
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空间相关的U网:用于医学图像分割的高精度体系结构

Spatially Dependent U-Nets: Highly Accurate Architectures for Medical Imaging Segmentation

Institute for Machine Learning, ETH Zurich(苏黎世联邦理工学院机器学习研究所);Instituto Superior Técnico, Universidade de Lisboa(里斯本大学高等技术学院);Champalimaud Foundation(尚帕利莫基金会)

João B. S. Carvalho, João A. Santinha, Đorđe Miladinović, Joachim M. Buhmann

摘要:

在临床实践中,医学成像中的感兴趣区域通常需要通过精确的图像分割过程来识别。该图像分割步骤的质量严重影响患者状态的后续临床评估。为了实现高精度的自动图像分割,我们引入了一种新型的深度神经网络架构,该架构利用了解剖结构的固有空间相干性,并且能够很好地捕获分割像素/体素空间中的长距离空间依赖性。与基于卷积层的最先进的解决方案相比,我们的方法利用了最近引入的空间依赖层,这些空间依赖层具有无限的感受野,并明确地对空间相干性的归纳偏差进行建模。我们的方法表现良好,常用的U-Net和U-Net++架构,证明了改进的Dice和Jaccardscore在三个不同的医疗分割任务:细胞核分割显微镜图像,息肉分割结肠镜视频,肝脏分割腹部CT扫描。

英文摘要:

In clinical practice, regions of interest in medical imaging often need to be identified through a process of precise image segmentation. The quality of this image segmentation step critically affects the subsequent clinical assessment of the patient status. To enable high accuracy, automatic image segmentation, we introduce a novel deep neural network architecture that exploits the inherent spatial coherence of anatomical structures and is well equipped to capture long-range spatial dependencies in the segmented pixel/voxel space. In contrast to the state-of-the-art solutions based on convolutional layers, our approach leverages on recently introduced spatial dependency layers that have an unbounded receptive field and explicitly model the inductive bias of spatial coherence. Our method performs favourably to commonly used U-Net and U-Net++ architectures as demonstrated by improved Dice and Jaccardscore in three different medical segmentation tasks: nuclei segmentation in microscopy images, polyp segmentation in colonoscopy videos, and liver segmentation in abdominal CT scans.

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