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arXiv 2103.05774cs.SI
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一种基于原则的加权多层网络聚合方法

A principled approach for weighted multilayer network aggregation

Junyao Kuang, Caterina Scoglio

摘要:

多层网络描述了同一组节点之间的不同类型的交互。例如,蛋白酶网络由五到七层组成,其中不同的层代表不同类型的实验证实的蛋白质之间的分子相互作用。在多层蛋白酶网络中,共表达层是通过对来自各种来源和平台的转录组数据进行荟萃分析获得的。虽然在一些研究中,共表达层反过来表示为多层网络,但一个基本问题是如何从相应的多层网络获得单层网络。这个过程称为多层网络聚合。在这项工作中,我们提出了一个最大后验估计为基础的多层网络聚合算法。该方法允许聚合加权多层网络,同时保存层的核心信息。我们通过一个未加权的友谊网络和一个多层基因共表达网络来评估该方法。我们将聚合基因共表达网络与从合并数据集获得的网络和从平均权重获得的网络进行比较。采用Von Neumann熵对三种网络的混合性进行了比较,并与其他网络测量结果一起表明了所提方法的有效性。

英文摘要:

A multilayer network depicts different types of interactions among the same set of nodes. For example, protease networks consist of five to seven layers, where different layers represent distinct types of experimentally confirmed molecule interactions among proteins. In a multilayer protease network, the co-expression layer is obtained through the meta-analysis of transcriptomic data from various sources and platforms. While in some researches the co-expression layer is in turn represented as a multilayered network, a fundamental problem is how to obtain a single-layer network from the corresponding multilayered network. This process is called multilayer network aggregation. In this work, we propose a maximum a posteriori estimation-based algorithm for multilayer network aggregation. The method allows to aggregate a weighted multilayer network while conserving the core information of the layers. We evaluate the method through an unweighted friendship network and a multilayer gene co-expression network. We compare the aggregated gene co-expression network with a network obtained from conflated datasets and a network obtained from averaged weights. The Von Neumann entropy is adopted to compare the mixedness of the three networks, and, together with other network measurements, shows the effectiveness of the proposes method.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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