We propose a similarity measure for sparsely sampled time course data in the form of a log-likelihood ratio of Gaussian processes (GP). The proposed GP similarity is similar to a Bayes factor and provides enhanced robustness to noise in sparse time series, such as those found in various biological settings, e.g., gene transcriptomics. We show that the GP measure is equivalent to the Euclidean distance when the noise variance in the GP is negligible compared to the noise variance of the signal. Our numerical experiments on both synthetic and real data show improved performance of the GP similarity when used in conjunction with two distance-based clustering methods.
Despite the success of the popular kernelized support vector machines, they have two major limitations: they are restricted to Positive Semi-Definite (PSD) kernels, and their training complexity scales at least quadratically with the size of the data. Many natural measures of similarity between pairs of samples are not PSD e.g. invariant kernels, and those that are implicitly or explicitly defined by latent variable models. In this paper, we investigate scalable approaches for using indefinite similarity measures in large margin frameworks. In particular we show that a normalization of similar…
Grade prediction for future courses not yet taken by students is important as it can help them and their advisers during the process of course selection as well as for designing personalized degree plans and modifying them based on their performance. One of the successful approaches for accurately predicting a student's grades in future courses is Cumulative Knowledge-based Regression Models (CKRM). CKRM learns shallow linear models that predict a student's grades as the similarity between his/her knowledge state and the target course. A student's knowledge state is built by linearly accumulat…
Sharif University of Technology（谢里夫理工大学）；Qom University of Technology（库姆理工大学）
In this paper, we study the missing sample recovery problem using methods based on sparse approximation. In this regard, we investigate the algorithms used for solving the inverse problem associated with the restoration of missed samples of image signal. This problem is also known as inpainting in the context of image processing and for this purpose, we suggest an iterative sparse recovery algorithm based on constrained $l_1$-norm minimization with a new fidelity metric. The proposed metric called Convex SIMilarity (CSIM) index, is a simplified version of the Structural SIMilarity (SSIM) index…
This paper investigates the problem of recovering missing samples using methods based on sparse representation adapted especially for image signals. Instead of $l_2$-norm or Mean Square Error (MSE), a new perceptual quality measure is used as the similarity criterion between the original and the reconstructed images. The proposed criterion called Convex SIMilarity (CSIM) index is a modified version of the Structural SIMilarity (SSIM) index, which despite its predecessor, is convex and uni-modal. We derive mathematical properties for the proposed index and show how to optimally choose the param…
Patient similarity assessment (PSA) is pivotal to evidence-based and personalized medicine, enabled by analyzing the increasingly available electronic health records (EHRs). However, machine learning approaches for PSA has to deal with inherent data deficiencies of EHRs, namely missing values, noise, and small sample sizes. In this work, an end-to-end discriminative learning framework, called SparGE, is proposed to address these data challenges of EHR for PSA. SparGE measures similarity by jointly sparse coding and graph embedding. First, we use low-rank constrained sparse coding to identify a…
University of Southern California（南加州大学）；Télécom ParisTech（巴黎高等电信学院）；CNRS（法国国家科学研究中心）
A good measure of similarity between data points is crucial to many tasks in machine learning. Similarity and metric learning methods learn such measures automatically from data, but they do not scale well respect to the dimensionality of the data. In this paper, we propose a method that can learn efficiently similarity measure from high-dimensional sparse data. The core idea is to parameterize the similarity measure as a convex combination of rank-one matrices with specific sparsity structures. The parameters are then optimized with an approximate Frank-Wolfe procedure to maximally satisfy re…
Huazhong University of Science and Technology（华中科技大学）；Institute for Infocomm Research, A*STAR（新加坡科技研究局资讯通信研究院）；Wuhan University（武汉大学）
For many data mining and machine learning tasks, the quality of a similarity measure is the key for their performance. To automatically find a good similarity measure from datasets, metric learning and similarity learning are proposed and studied extensively. Metric learning will learn a Mahalanobis distance based on positive semi-definite (PSD) matrix, to measure the distances between objectives, while similarity learning aims to directly learn a similarity function without PSD constraint so that it is more attractive. Most of the existing similarity learning algorithms are online similarity …
Laboratoire Hubert Curien UMR CNRS 5516（于贝尔·居里安实验室（法国国家科学研究中心 UMR 5516））
In recent years, the crucial importance of metrics in machine learning algorithms has led to an increasing interest for optimizing distance and similarity functions. Most of the state of the art focus on learning Mahalanobis distances (requiring to fulfill a constraint of positive semi-definiteness) for use in a local k-NN algorithm. However, no theoretical link is established between the learned metrics and their performance in classification. In this paper, we make use of the formal framework of good similarities introduced by Balcan et al. to design an algorithm for learning a non PSD linea…
Massachusetts Institute of Technology（麻省理工学院）；Cornell University（康奈尔大学）
Consider the task of estimating a 3-order $n \times n \times n$ tensor from noisy observations of randomly chosen entries in the sparse regime. We introduce a similarity based collaborative filtering algorithm for estimating a tensor from sparse observations and argue that it achieves sample complexity that nearly matches the conjectured computationally efficient lower bound on the sample complexity for the setting of low-rank tensors. Our algorithm uses the matrix obtained from the flattened tensor to compute similarity, and estimates the tensor entries using a nearest neighbor estimator. We …
Northeastern University（东北大学）；Technical University of Munich（慕尼黑工业大学）
Short-term traffic forecasting is an extensively studied topic in the field of intelligent transportation system. However, most existing forecasting systems are limited by the requirement of real-time probe vehicle data because of their formulation as a time series forecasting problem. Towards this issue, the NeurIPS 2022 Traffic4cast challenge is dedicated to predicting the citywide traffic states with publicly available sparse loop count data. This technical report introduces our second-place winning solution to the extended challenge of ETA prediction. We present a similarity-based feature …
UC San Diego（加利福尼亚大学圣地亚哥分校）；MIT-IBM Watson AI Lab（麻省理工学院-IBM沃森人工智能实验室）；Princeton University（普林斯顿大学）；IBM Research（IBM研究院）
The fruit fly Drosophila's olfactory circuit has inspired a new locality sensitive hashing (LSH) algorithm, FlyHash. In contrast with classical LSH algorithms that produce low dimensional hash codes, FlyHash produces sparse high-dimensional hash codes and has also been shown to have superior empirical performance compared to classical LSH algorithms in similarity search. However, FlyHash uses random projections and cannot learn from data. Building on inspiration from FlyHash and the ubiquity of sparse expansive representations in neurobiology, our work proposes a novel hashing algorithm BioHas…
Indian Institute of Technology（印度理工学院）；Microsoft Research Lab（微软研究院）
We address the problem of general supervised learning when data can only be accessed through an (indefinite) similarity function between data points. Existing work on learning with indefinite kernels has concentrated solely on binary/multi-class classification problems. We propose a model that is generic enough to handle any supervised learning task and also subsumes the model previously proposed for classification. We give a "goodness" criterion for similarity functions w.r.t. a given supervised learning task and then adapt a well-known landmarking technique to provide efficient algorithms fo…
The development of algorithms for unsupervised pattern recognition by nonlinear clustering is a notable problem in data science. Markov clustering (MCL) is a renowned algorithm that simulates stochastic flows on a network of sample similarities to detect the structural organization of clusters in the data, but it has never been generalized to deal with data nonlinearity. Minimum Curvilinearity (MC) is a principle that approximates nonlinear sample distances in the high-dimensional feature space by curvilinear distances, which are computed as transversal paths over their minimum spanning tree, …
DeepMind（深度思维）；Facebook AI Research (FAIR)（脸书人工智能研究院）；Google Brain（谷歌大脑）；Cornell University（康奈尔大学）
Comparing different neural network representations and determining how representations evolve over time remain challenging open questions in our understanding of the function of neural networks. Comparing representations in neural networks is fundamentally difficult as the structure of representations varies greatly, even across groups of networks trained on identical tasks, and over the course of training. Here, we develop projection weighted CCA (Canonical Correlation Analysis) as a tool for understanding neural networks, building off of SVCCA, a recently proposed method (Raghu et al., 2017)…
Traditional semantic similarity models often fail to encapsulate the external context in which texts are situated. However, textual datasets generated on mobile platforms can help us build a truer representation of semantic similarity by introducing multimodal data. This is especially important in sparse datasets, making solely text-driven interpretation of context more difficult. In this paper, we develop new algorithms for building external features into sentence embeddings and semantic similarity scores. Then, we test them on embedding spaces on data from Twitter, using each tweet's time an…
Institute of Communications Engineering（通信工程研究所）；National Tsing Hua University（国立清华大学）
In this paper, we first propose a new iterative algorithm, called the K-sets+ algorithm for clustering data points in a semi-metric space, where the distance measure does not necessarily satisfy the triangular inequality. We show that the K-sets+ algorithm converges in a finite number of iterations and it retains the same performance guarantee as the K-sets algorithm for clustering data points in a metric space. We then extend the applicability of the K-sets+ algorithm from data points in a semi-metric space to data points that only have a symmetric similarity measure. Such an extension leads …
There is increasing realization in neuroscience that information is represented in the brain, e.g., neocortex, hippocampus, in the form sparse distributed codes (SDCs), a kind of cell assembly. Two essential questions are: a) how are such codes formed on the basis of single trials, and how is similarity preserved during learning, i.e., how do more similar inputs get mapped to more similar SDCs. I describe a novel Modular Sparse Distributed Code (MSDC) that provides simple, neurally plausible answers to both questions. An MSDC coding field (CF) consists of Q WTA competitive modules (CMs), each …
Air Force Engineering University（空军工程大学）；Northwestern Polytechnical University（西北工业大学）
In the field of data mining, how to deal with high-dimensional data is an inevitable problem. Unsupervised feature selection has attracted more and more attention because it does not rely on labels. The performance of spectral-based unsupervised methods depends on the quality of constructed similarity matrix, which is used to depict the intrinsic structure of data. However, real-world data contain a large number of noise samples and features, making the similarity matrix constructed by original data cannot be completely reliable. Worse still, the size of similarity matrix expands rapidly as th…
Subspace clustering refers to the problem of clustering high-dimensional data into a union of low-dimensional subspaces. Current subspace clustering approaches are usually based on a two-stage framework. In the first stage, an affinity matrix is generated from data. In the second one, spectral clustering is applied on the affinity matrix. However, the affinity matrix produced by two-stage methods cannot fully reveal the similarity between data points from the same subspace (intra-subspace similarity), resulting in inaccurate clustering. Besides, most approaches fail to solve large-scale cluste…
NTT Communication Science Laboratories（NTT通信科学实验室）；Kanagawa University（神奈川大学）
This paper presents an architecture-friendly k-means clustering algorithm called SIVF for a large-scale and high-dimensional sparse data set. Algorithm efficiency on time is often measured by the number of costly operations such as similarity calculations. In practice, however, it depends greatly on how the algorithm adapts to an architecture of the computer system which it is executed on. Our proposed SIVF employs invariant centroid-pair based filter (ICP) to decrease the number of similarity calculations between a data object and centroids of all the clusters. To maximize the ICP performance…
In several applications, input samples are more naturally represented in terms of similarities between each other, rather than in terms of feature vectors. In these settings, machine-learning algorithms can become very computationally demanding, as they may require matching the test samples against a very large set of reference prototypes. To mitigate this issue, different approaches have been developed to reduce the number of required reference prototypes. Current reduction approaches select a small subset of representative prototypes in the space induced by the similarity measure, and then s…
Sparse Network Inference under Imperfect Detection and its Application to Ecological Networks
Department of Electrical and Computer Engineering and the Ken Kennedy Institute（电气与计算机工程系和肯尼迪研究所）；Department of Computational and Applied Mathematics at Rice University（里士满大学计算与应用数学系）；SISTEMIC, Facultad de Ingeniería, Universidad de Antioquia（安提奥基亚大学工程学院SISTEMIC）
Recent technological advancements have led to the generation of huge amounts of data over the web, such as text, image, audio and video. Most of this data is high dimensional and sparse, for e.g., the bag-of-words representation used for representing text. Often, an efficient search for similar data points needs to be performed in many applications like clustering, nearest neighbour search, ranking and indexing. Even though there have been significant increases in computational power, a simple brute-force similarity-search on such datasets is inefficient and at times impossible. Thus, it is de…
University of Electronic Science and Technology of China（电子科技大学）；Qingdao University（青岛大学）
Leveraging on the underlying low-dimensional structure of data, low-rank and sparse modeling approaches have achieved great success in a wide range of applications. However, in many applications the data can display structures beyond simply being low-rank or sparse. Fully extracting and exploiting hidden structure information in the data is always desirable and favorable. To reveal more underlying effective manifold structure, in this paper, we explicitly model the data relation. Specifically, we propose a structure learning framework that retains the pairwise similarities between the data poi…
We propose and analyze a novel framework for learning sparse representations, based on two statistical techniques: kernel smoothing and marginal regression. The proposed approach provides a flexible framework for incorporating feature similarity or temporal information present in data sets, via non-parametric kernel smoothing. We provide generalization bounds for dictionary learning using smooth sparse coding and show how the sample complexity depends on the L1 norm of kernel function used. Furthermore, we propose using marginal regression for obtaining sparse codes, which significantly improv…
Stony Brook University（石溪大学）；University of California, Los Angeles（加州大学洛杉矶分校）
We present FastRP, a scalable and performant algorithm for learning distributed node representations in a graph. FastRP is over 4,000 times faster than state-of-the-art methods such as DeepWalk and node2vec, while achieving comparable or even better performance as evaluated on several real-world networks on various downstream tasks. We observe that most network embedding methods consist of two components: construct a node similarity matrix and then apply dimension reduction techniques to this matrix. We show that the success of these methods should be attributed to the proper construction of t…
Google Inc.（谷歌公司）；Information Sciences Institute, University of Southern California（南加州大学信息科学研究所）；INRIA（法国国家信息与自动化研究所）
Similarity and metric learning provides a principled approach to construct a task-specific similarity from weakly supervised data. However, these methods are subject to the curse of dimensionality: as the number of features grows large, poor generalization is to be expected and training becomes intractable due to high computational and memory costs. In this paper, we propose a similarity learning method that can efficiently deal with high-dimensional sparse data. This is achieved through a parameterization of similarity functions by convex combinations of sparse rank-one matrices, together wit…
CITEC cluster of excellence（CITEC卓越集群）；Bielefeld University（比勒费尔德大学）
We are interested in the decomposition of motion data into a sparse linear combination of base functions which enable efficient data processing. We combine two prominent frameworks: dynamic time warping (DTW), which offers particularly successful pairwise motion data comparison, and sparse coding (SC), which enables an automatic decomposition of vectorial data into a sparse linear combination of base vectors. We enhance SC as follows: an efficient kernelization which extends its application domain to general similarity data such as offered by DTW, and its restriction to non-negative linear rep…
Similarity-driven multi-view linear reconstruction (SiMLR) is an algorithm that exploits inter-modality relationships to transform large scientific datasets into smaller, more well-powered and interpretable low-dimensional spaces. SiMLR contributes a novel objective function for identifying joint signal, regularization based on sparse matrices representing prior within-modality relationships and an implementation that permits application to joint reduction of large data matrices, each of which may have millions of entries. We demonstrate that SiMLR outperforms closely related methods on superv…
Sparse subspace clustering methods, such as Sparse Subspace Clustering (SSC) \cite{ElhamifarV13} and $\ell^{1}$-graph \cite{YanW09,ChengYYFH10}, are effective in partitioning the data that lie in a union of subspaces. Most of those methods use $\ell^{1}$-norm or $\ell^{2}$-norm with thresholding to impose the sparsity of the constructed sparse similarity graph, and certain assumptions, e.g. independence or disjointness, on the subspaces are required to obtain the subspace-sparse representation, which is the key to their success. Such assumptions are not guaranteed to hold in practice and they …
State-of-the-art algorithms for sparse subspace clustering perform spectral clustering on a similarity matrix typically obtained by representing each data point as a sparse combination of other points using either basis pursuit (BP) or orthogonal matching pursuit (OMP). BP-based methods are often prohibitive in practice while the performance of OMP-based schemes are unsatisfactory, especially in settings where data points are highly similar. In this paper, we propose a novel algorithm that exploits an accelerated variant of orthogonal least-squares to efficiently find the underlying subspaces.…
Palo Alto Research Center（帕洛阿尔托研究中心）；Intel Labs（英特尔实验室）
This paper proposes Relational Similarity Machines (RSM): a fast, accurate, and flexible relational learning framework for supervised and semi-supervised learning tasks. Despite the importance of relational learning, most existing methods are hard to adapt to different settings, due to issues with efficiency, scalability, accuracy, and flexibility for handling a wide variety of classification problems, data, constraints, and tasks. For instance, many existing methods perform poorly for multi-class classification problems, graphs that are sparsely labeled or network data with low relational aut…
We propose SPARFA-Trace, a new machine learning-based framework for time-varying learning and content analytics for education applications. We develop a novel message passing-based, blind, approximate Kalman filter for sparse factor analysis (SPARFA), that jointly (i) traces learner concept knowledge over time, (ii) analyzes learner concept knowledge state transitions (induced by interacting with learning resources, such as textbook sections, lecture videos, etc, or the forgetting effect), and (iii) estimates the content organization and intrinsic difficulty of the assessment questions. These …
University of Manitoba（曼尼托巴大学）；University of Electronic Science and Technology of China（电子科技大学）
Data similarity is a key concept in many data-driven applications. Many algorithms are sensitive to similarity measures. To tackle this fundamental problem, automatically learning of similarity information from data via self-expression has been developed and successfully applied in various models, such as low-rank representation, sparse subspace learning, semi-supervised learning. However, it just tries to reconstruct the original data and some valuable information, e.g., the manifold structure, is largely ignored. In this paper, we argue that it is beneficial to preserve the overall relations…
