MeDAL: Medical Abbreviation Disambiguation Dataset for Natural Language Understanding Pretraining

A Neural Topic-Attention Model for Medical Term Abbreviation Disambiguation

Automated analysis of clinical notes is attracting increasing attention. However, there has not been much work on medical term abbreviation disambiguation. Such abbreviations are abundant, and highly ambiguous, in clinical documents. One of the main obstacles is the lack of large scale, balance labeled data sets. To address the issue, we propose a few-shot learning approach to take advantage of limited labeled data. Specifically, a neural topic-attention model is applied to learn improved contextualized sentence representations for medical term abbreviation disambiguation. Another vital issue …

Training without training data: Improving the generalizability of automated medical abbreviation disambiguation

Abbreviation disambiguation is important for automated clinical note processing due to the frequent use of abbreviations in clinical settings. Current models for automated abbreviation disambiguation are restricted by the scarcity and imbalance of labeled training data, decreasing their generalizability to orthogonal sources. In this work we propose a novel data augmentation technique that utilizes information from related medical concepts, which improves our model's ability to generalize. Furthermore, we show that incorporating the global context information within the whole medical note (in …

Unsupervised Abbreviation Disambiguation Contextual disambiguation using word embeddings

Abbreviations often have several distinct meanings, often making their use in text ambiguous. Expanding them to their intended meaning in context is important for Machine Reading tasks such as document search, recommendation and question answering. Existing approaches mostly rely on manually labeled examples of abbreviations and their correct long-forms. Such data sets are costly to create and result in trained models with limited applicability and flexibility. Importantly, most current methods must be subjected to a full empirical evaluation in order to understand their limitations, which is …

Token Classification for Disambiguating Medical Abbreviations

Abbreviations are unavoidable yet critical parts of the medical text. Using abbreviations, especially in clinical patient notes, can save time and space, protect sensitive information, and help avoid repetitions. However, most abbreviations might have multiple senses, and the lack of a standardized mapping system makes disambiguating abbreviations a difficult and time-consuming task. The main objective of this study is to examine the feasibility of token classification methods for medical abbreviation disambiguation. Specifically, we explore the capability of token classification methods to de…

Language Independent Acquisition of Abbreviations

This paper addresses automatic extraction of abbreviations (encompassing acronyms and initialisms) and corresponding long-form expansions from plain unstructured text. We create and are going to release a multilingual resource for abbreviations and their corresponding expansions, built automatically by exploiting Wikipedia redirect and disambiguation pages, that can be used as a benchmark for evaluation. We address a shortcoming of previous work where only the redirect pages were used, and so every abbreviation had only a single expansion, even though multiple different expansions are possible…

PLACID：隐私保护的大语言模型用于缩写临床推断和消歧

PLACID: Privacy-preserving Large language models for Acronym Clinical Inference and Disambiguation

本文提出PLACID模型，通过本地部署的小参数模型实现隐私保护的临床缩写消歧，利用通用本地模型检测缩写并路由至领域特定的生物医学模型以提高扩展准确性。