Self-supervised representation learning of biological sequence embeddings alleviates computational resource constraints on downstream tasks while circumventing expensive experimental label acquisition. However, existing methods mostly borrow directly from large language models designed for NLP, rather than with bioinformatics philosophies in mind. Recently, contrastive mutual information maximization methods have achieved state-of-the-art representations for ImageNet. In this perspective piece, we discuss how viewing evolution as natural sequence augmentation and maximizing information across phylogenetic "noisy channels" is a biologically and theoretically desirable objective for pretraining encoders. We first provide a review of current contrastive learning literature, then provide an illustrative example where we show that contrastive learning using evolutionary augmentation can be used as a representation learning objective which maximizes the mutual information between biological sequences and their conserved function, and finally outline rationale for this approach.
We introduce EfficientCL, a memory-efficient continual pretraining method that applies contrastive learning with novel data augmentation and curriculum learning. For data augmentation, we stack two types of operation sequentially: cutoff and PCA jittering. While pretraining steps proceed, we apply curriculum learning by incrementing the augmentation degree for each difficulty step. After data augmentation is finished, contrastive learning is applied on projected embeddings of original and augmented examples. When finetuned on GLUE benchmark, our model outperforms baseline models, especially fo…
Despite profound successes, contrastive representation learning relies on carefully designed data augmentations using domain specific knowledge. This challenge is magnified in natural language processing where no general rules exist for data augmentation due to the discrete nature of natural language. We tackle this challenge by presenting a Virtual augmentation Supported Contrastive Learning of sentence representations (VaSCL). Originating from the interpretation that data augmentation essentially constructs the neighborhoods of each training instance, we in turn utilize the neighborhood to g…
Institute of Computing Technology, Chinese Academy of Sciences（中国科学院计算技术研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Tencent（腾讯）
Recently, Graph Neural Networks (GNNs) achieve remarkable success in Recommendation. To reduce the influence of data sparsity, Graph Contrastive Learning (GCL) is adopted in GNN-based CF methods for enhancing performance. Most GCL methods consist of data augmentation and contrastive loss (e.g., InfoNCE). GCL methods construct the contrastive pairs by hand-crafted graph augmentations and maximize the agreement between different views of the same node compared to that of other nodes, which is known as the InfoMax principle. However, improper data augmentation will hinder the performance of GCL. …
Preferred Networks, Inc.（Preferred Networks公司）；University of Oxford（牛津大学）
In contrastive representation learning, data representation is trained so that it can classify the image instances even when the images are altered by augmentations. However, depending on the datasets, some augmentations can damage the information of the images beyond recognition, and such augmentations can result in collapsed representations. We present a partial solution to this problem by formalizing a stochastic encoding process in which there exist a tug-of-war between the data corruption introduced by the augmentations and the information preserved by the encoder. We show that, with the …
The Chinese University of Hong Kong（香港中文大学）；Australian National University（澳大利亚国立大学）；Data61/CSIRO（澳大利亚联邦科学与工业研究组织数据61研究所）
Graph contrastive learning (GCL) improves graph representation learning, leading to SOTA on various downstream tasks. The graph augmentation step is a vital but scarcely studied step of GCL. In this paper, we show that the node embedding obtained via the graph augmentations is highly biased, somewhat limiting contrastive models from learning discriminative features for downstream tasks. Thus, instead of investigating graph augmentation in the input space, we alternatively propose to perform augmentations on the hidden features (feature augmentation). Inspired by so-called matrix sketching, we …
Florida International University（佛罗里达国际大学）；NEC Labs America（NEC美国实验室）；North Carolina State University（北卡罗来纳州立大学）；The Pennsylvania State University（宾夕法尼亚州立大学）
Various contrastive learning approaches have been proposed in recent years and achieve significant empirical success. While effective and prevalent, contrastive learning has been less explored for time series data. A key component of contrastive learning is to select appropriate augmentations imposing some priors to construct feasible positive samples, such that an encoder can be trained to learn robust and discriminative representations. Unlike image and language domains where ``desired'' augmented samples can be generated with the rule of thumb guided by prefabricated human priors, the ad-ho…
What role do augmentations play in contrastive learning? Recent work suggests that good augmentations are label-preserving with respect to a specific downstream task. We complicate this picture by showing that label-destroying augmentations can be useful in the foundation model setting, where the goal is to learn diverse, general-purpose representations for multiple downstream tasks. We perform contrastive learning experiments on a range of image and audio datasets with multiple downstream tasks (e.g. for digits superimposed on photographs, predicting the class of one vs. the other). We find t…
Hybrid-Collaborative Augmentation and Contrastive Sample Adaptive-Differential Awareness for Robust Attributed Graph Clustering
College of Information Science and Technology, Beijing University of Chemical Technology（北京化工大学信息科学与技术学院）；Beijing University of Technology（北京工业大学）；The University of Sydney Business School, The University of Sydney（悉尼大学商学院）
The University of Sydney（悉尼大学）；ByteDance AI Lab（字节跳动人工智能实验室）；University of California San Diego（加利福尼亚大学圣迭戈分校）
Existing graph contrastive learning methods rely on augmentation techniques based on random perturbations (e.g., randomly adding or dropping edges and nodes). Nevertheless, altering certain edges or nodes can unexpectedly change the graph characteristics, and choosing the optimal perturbing ratio for each dataset requires onerous manual tuning. In this paper, we introduce Implicit Graph Contrastive Learning (iGCL), which utilizes augmentations in the latent space learned from a Variational Graph Auto-Encoder by reconstructing graph topological structure. Importantly, instead of explicitly samp…
Salesforce Research（赛富时研究院）；Arizona State University（亚利桑那州立大学）；University of Illinois at Chicago（伊利诺伊大学芝加哥分校）
The sequential recommendation aims at predicting the next items in user behaviors, which can be solved by characterizing item relationships in sequences. Due to the data sparsity and noise issues in sequences, a new self-supervised learning (SSL) paradigm is proposed to improve the performance, which employs contrastive learning between positive and negative views of sequences. However, existing methods all construct views by adopting augmentation from data perspectives, while we argue that 1) optimal data augmentation methods are hard to devise, 2) data augmentation methods destroy sequential…
Beijing University of Posts and Telecommunications（北京邮电大学）
Contrastive learning (CL), which can extract the information shared between different contrastive views, has become a popular paradigm for vision representation learning. Inspired by the success in computer vision, recent work introduces CL into graph modeling, dubbed as graph contrastive learning (GCL). However, generating contrastive views in graphs is more challenging than that in images, since we have little prior knowledge on how to significantly augment a graph without changing its labels. We argue that typical data augmentation techniques (e.g., edge dropping) in GCL cannot generate div…
Ingenuity Labs Research Institute（Ingenuity Labs研究院）
This paper systematically investigates the effectiveness of various augmentations for contrastive self-supervised learning of electrocardiogram (ECG) signals and identifies the best parameters. The baseline of our proposed self-supervised framework consists of two main parts: the contrastive learning and the downstream task. In the first stage, we train an encoder using a number of augmentations to extract generalizable ECG signal representations. We then freeze the encoder and finetune a few linear layers with different amounts of labelled data for downstream arrhythmia detection. We then exp…
Contrastive learning has emerged as a premier method for learning representations with or without supervision. Recent studies have shown its utility in graph representation learning for pre-training. Despite successes, the understanding of how to design effective graph augmentations that can capture structural properties common to many different types of downstream graphs remains incomplete. We propose a set of well-motivated graph transformation operations derived via graph spectral analysis to provide a bank of candidates when constructing augmentations for a graph contrastive objective, ena…
Contrastive learning enables learning useful audio and speech representations without ground-truth labels by maximizing the similarity between latent representations of similar signal segments. In this framework various data augmentation techniques are usually exploited to help enforce desired invariances within the learned representations, improving performance on various audio tasks thanks to more robust embeddings. Now, selecting the most relevant augmentations has proven crucial for better downstream performances. Thus, this work introduces a conditional independance-based method which all…
The Hong Kong Polytechnic University（香港理工大学）；Texas A&M University（德州农工大学）
Graph contrastive learning (GCL) has emerged as an effective tool for learning unsupervised representations of graphs. The key idea is to maximize the agreement between two augmented views of each graph via data augmentation. Existing GCL models mainly focus on applying \textit{identical augmentation strategies} for all graphs within a given scenario. However, real-world graphs are often not monomorphic but abstractions of diverse natures. Even within the same scenario (e.g., macromolecules and online communities), different graphs might need diverse augmentations to perform effective GCL. Thu…
University of Science and Technology of China（中国科学技术大学）
Self-Supervised learning aims to eliminate the need for expensive annotation in graph representation learning, where graph contrastive learning (GCL) is trained with the self-supervision signals containing data-data pairs. These data-data pairs are generated with augmentation employing stochastic functions on the original graph. We argue that some features can be more critical than others depending on the downstream task, and applying stochastic function uniformly, will vandalize the influential features, leading to diminished accuracy. To fix this issue, we introduce a Feature Based Adaptive …
Data Augmentation of Contrastive Learning is Estimating Positive-incentive Noise
The University of Hong Kong（香港大学）；Institute of Artificial Intelligence (TeleAI), China Telecom（中国电信人工智能研究院）；Fudan University（复旦大学）；School of Artificial Intelligence, OPtics（人工智能学院）；ElectroNics (iOPEN), Northwestern Polytechnical University（西北工业大学电子学院）
AS-GCL: Asymmetric Spectral Augmentation on Graph Contrastive Learning
Institute of Information Engineering, Chinese Academy of Sciences（中国科学院信息工程研究所）；School of Cyberspace Security, University of Chinese Academy of Sciences（中国科学院大学网络空间安全学院）；Renmin University of China（中国人民大学）；Beijing Academy of Artificial Intelligence（北京人工智能研究院）
An Augmentation Overlap Theory of Contrastive Learning
State Key Lab of General Artificial Intelligence, School of Intelligence Science and Technology, Peking University（一般人工智能国家重点实验室，智能科学与技术学院，北京大学）；CSAIL, MIT（计算机科学与人工智能实验室，麻省理工学院）；Institute for Artificial Intelligence, Peking University（人工智能研究院，北京大学）
Institute of Automation, Chinese Academy of Sciences（中国科学院自动化研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Beijing University of Posts and Telecommunications（北京邮电大学）；Alibaba Group（阿里巴巴集团）
Recently, contrastive learning (CL) has emerged as a successful method for unsupervised graph representation learning. Most graph CL methods first perform stochastic augmentation on the input graph to obtain two graph views and maximize the agreement of representations in the two views. Despite the prosperous development of graph CL methods, the design of graph augmentation schemes -- a crucial component in CL -- remains rarely explored. We argue that the data augmentation schemes should preserve intrinsic structures and attributes of graphs, which will force the model to learn representations…
Korea Advanced Institute of Science and Technology (KAIST)（韩国科学技术院）
Recent works in Generative Adversarial Networks (GANs) are actively revisiting various data augmentation techniques as an effective way to prevent discriminator overfitting. It is still unclear, however, that which augmentations could actually improve GANs, and in particular, how to apply a wider range of augmentations in training. In this paper, we propose a novel way to address these questions by incorporating a recent contrastive representation learning scheme into the GAN discriminator, coined ContraD. This "fusion" enables the discriminators to work with much stronger augmentations withou…
University of Texas at Austin（德克萨斯大学奥斯汀分校）；Texas A&M University（德州农工大学）；University of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
This paper targets at improving the generalizability of hypergraph neural networks in the low-label regime, through applying the contrastive learning approach from images/graphs (we refer to it as HyperGCL). We focus on the following question: How to construct contrastive views for hypergraphs via augmentations? We provide the solutions in two folds. First, guided by domain knowledge, we fabricate two schemes to augment hyperedges with higher-order relations encoded, and adopt three vertex augmentation strategies from graph-structured data. Second, in search of more effective views in a data-d…
Recent works have shown that self-supervised learning can achieve remarkable robustness when integrated with adversarial training (AT). However, the robustness gap between supervised AT (sup-AT) and self-supervised AT (self-AT) remains significant. Motivated by this observation, we revisit existing self-AT methods and discover an inherent dilemma that affects self-AT robustness: either strong or weak data augmentations are harmful to self-AT, and a medium strength is insufficient to bridge the gap. To resolve this dilemma, we propose a simple remedy named DYNACL (Dynamic Adversarial Contrastiv…
The Chinese University of Hong Kong（香港中文大学）；Australian National University（澳大利亚国立大学）；Data61/CSIRO（Data61/澳大利亚联邦科学与工业研究组织）
Although augmentations (e.g., perturbation of graph edges, image crops) boost the efficiency of Contrastive Learning (CL), feature level augmentation is another plausible, complementary yet not well researched strategy. Thus, we present a novel spectral feature argumentation for contrastive learning on graphs (and images). To this end, for each data view, we estimate a low-rank approximation per feature map and subtract that approximation from the map to obtain its complement. This is achieved by the proposed herein incomplete power iteration, a non-standard power iteration regime which enjoys…
Contrastive learning is a popular form of self-supervised learning that encourages augmentations (views) of the same input to have more similar representations compared to augmentations of different inputs. Recent attempts to theoretically explain the success of contrastive learning on downstream classification tasks prove guarantees depending on properties of {\em augmentations} and the value of {\em contrastive loss} of representations. We demonstrate that such analyses, that ignore {\em inductive biases} of the function class and training algorithm, cannot adequately explain the success of …
Representation learning has significantly been developed with the advance of contrastive learning methods. Most of those methods have benefited from various data augmentations that are carefully designated to maintain their identities so that the images transformed from the same instance can still be retrieved. However, those carefully designed transformations limited us to further explore the novel patterns exposed by other transformations. Meanwhile, as found in our experiments, the strong augmentations distorted the images' structures, resulting in difficult retrieval. Thus, we propose a ge…
Queen’s University（女王大学）；Ingenuity Labs Research Institute（英格纽蒂实验室研究院）
We propose a self-supervised contrastive learning approach for facial expression recognition (FER) in videos. We propose a novel temporal sampling-based augmentation scheme to be utilized in addition to standard spatial augmentations used for contrastive learning. Our proposed temporal augmentation scheme randomly picks from one of three temporal sampling techniques: (1) pure random sampling, (2) uniform sampling, and (3) sequential sampling. This is followed by a combination of up to three standard spatial augmentations. We then use a deep R(2+1)D network for FER, which we train in a self-sup…
Domain generalisation (DG) methods address the problem of domain shift, when there is a mismatch between the distributions of training and target domains. Data augmentation approaches have emerged as a promising alternative for DG. However, data augmentation alone is not sufficient to achieve lower generalisation errors. This project proposes a new method that combines data augmentation and domain distance minimisation to address the problems associated with data augmentation and provide a guarantee on the learning performance, under an existing framework. Empirically, our method outperforms b…
New York University（纽约大学）；University of California, Berkeley（加州大学伯克利分校）
Recent advances in unsupervised representation learning significantly improved the sample efficiency of training Reinforcement Learning policies in simulated environments. However, similar gains have not yet been seen for real-robot reinforcement learning. In this work, we focus on enabling data-efficient real-robot learning from pixels. We present Contrastive Pre-training and Data Augmentation for Efficient Robotic Learning (CoDER), a method that utilizes data augmentation and unsupervised learning to achieve sample-efficient training of real-robot arm policies from sparse rewards. While cont…
Recently, contrastive learning has risen to be a promising approach for large-scale self-supervised learning. However, theoretical understanding of how it works is still unclear. In this paper, we propose a new guarantee on the downstream performance without resorting to the conditional independence assumption that is widely adopted in previous work but hardly holds in practice. Our new theory hinges on the insight that the support of different intra-class samples will become more overlapped under aggressive data augmentations, thus simply aligning the positive samples (augmented views of the …
SKLSDE, School of Computer Science and Engineering, Beihang University（北京航空航天大学计算机学院软件开发环境国家重点实验室）；Beijing Advanced Institution on Big Data and Brain Computing, Beihang University（北京航空航天大学大数据与脑机智能高精尖创新中心）；School of Electrical Engineering and Computer Science, University of Ottawa（渥太华大学电气工程与计算机科学学院）
Contrastive learning has achieved remarkable success in representation learning via self-supervision in unsupervised settings. However, effectively adapting contrastive learning to supervised learning tasks remains as a challenge in practice. In this work, we introduce a dual contrastive learning (DualCL) framework that simultaneously learns the features of input samples and the parameters of classifiers in the same space. Specifically, DualCL regards the parameters of the classifiers as augmented samples associating to different labels and then exploits the contrastive learning between the in…
South China Agricultural University（华南农业大学）；Sun Yat-sen University（中山大学）
Deep clustering has attracted increasing attention in recent years due to its capability of joint representation learning and clustering via deep neural networks. In its latest developments, the contrastive learning has emerged as an effective technique to substantially enhance the deep clustering performance. However, the existing contrastive learning based deep clustering algorithms mostly focus on some carefully-designed augmentations (often with limited transformations to preserve the structure), referred to as weak augmentations, but cannot go beyond the weak augmentations to explore the …
University of Toronto（多伦多大学）；Vector Institute（向量研究所）；ETH Zürich（苏黎世联邦理工学院）
Supervised learning can improve the design of state-of-the-art solvers for combinatorial problems, but labelling large numbers of combinatorial instances is often impractical due to exponential worst-case complexity. Inspired by the recent success of contrastive pre-training for images, we conduct a scientific study of the effect of augmentation design on contrastive pre-training for the Boolean satisfiability problem. While typical graph contrastive pre-training uses label-agnostic augmentations, our key insight is that many combinatorial problems have well-studied invariances, which allow fo…
Stanford University（斯坦福大学）；University of California, San Francisco（加利福尼亚大学旧金山分校）；Harvard Medical School（哈佛医学院）
We propose 3KG, a physiologically-inspired contrastive learning approach that generates views using 3D augmentations of the 12-lead electrocardiogram. We evaluate representation quality by fine-tuning a linear layer for the downstream task of 23-class diagnosis on the PhysioNet 2020 challenge training data and find that 3KG achieves a $9.1\%$ increase in mean AUC over the best self-supervised baseline when trained on $1\%$ of labeled data. Our empirical analysis shows that combining spatial and temporal augmentations produces the strongest representations. In addition, we investigate the effec…
University of Michigan（密歇根大学）；University of California, Berkeley（加州大学伯克利分校）
Unsupervised graph representation learning is critical to a wide range of applications where labels may be scarce or expensive to procure. Contrastive learning (CL) is an increasingly popular paradigm for such settings and the state-of-the-art in unsupervised visual representation learning. Recent work attributes the success of visual CL to use of task-relevant augmentations and large, diverse datasets. Interestingly, graph CL frameworks report strong performance despite using orders of magnitude smaller datasets and employing domain-agnostic graph augmentations (DAGAs). Motivated by this disc…
Grid AI Labs（Grid人工智能实验室）；New York University（纽约大学）
Recent methods for self-supervised learning can be grouped into two paradigms: contrastive and non-contrastive approaches. Their success can largely be attributed to data augmentation pipelines which generate multiple views of a single input that preserve the underlying semantics. In this work, we introduce augmentation-augmented stochastic autoencoders (AASAE), yet another alternative to self-supervised learning, based on autoencoding. We derive AASAE starting from the conventional variational autoencoder (VAE), by replacing the KL divergence regularization, which is agnostic to the input dom…
Westlake University（西湖大学）；Westlake Institute for Advanced Study（西湖高等研究院）；Zhejiang University（浙江大学）
Graph contrastive learning (GCL) has emerged as a dominant technique for graph representation learning which maximizes the mutual information between paired graph augmentations that share the same semantics. Unfortunately, it is difficult to preserve semantics well during augmentations in view of the diverse nature of graph data. Currently, data augmentations in GCL that are designed to preserve semantics broadly fall into three unsatisfactory ways. First, the augmentations can be manually picked per dataset by trial-and-errors. Second, the augmentations can be selected via cumbersome search. …
University of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；University of Washington（华盛顿大学）；University of Technology Sydney（悉尼科技大学）
Graph contrastive learning (GCL) is the most representative and prevalent self-supervised learning approach for graph-structured data. Despite its remarkable success, existing GCL methods highly rely on an augmentation scheme to learn the representations invariant across different augmentation views. In this work, we revisit such a convention in GCL through examining the effect of augmentation techniques on graph data via the lens of spectral theory. We found that graph augmentations preserve the low-frequency components and perturb the middle-and high-frequency components of the graph, which …
University of Science and Technology of China（中国科学技术大学）；Google Research, Brain Team（谷歌研究院，大脑团队）；Texas A&M University（德克萨斯A&M大学）；University of Texas at Austin（德克萨斯大学奥斯汀分校）
Generalizable, transferrable, and robust representation learning on graph-structured data remains a challenge for current graph neural networks (GNNs). Unlike what has been developed for convolutional neural networks (CNNs) for image data, self-supervised learning and pre-training are less explored for GNNs. In this paper, we propose a graph contrastive learning (GraphCL) framework for learning unsupervised representations of graph data. We first design four types of graph augmentations to incorporate various priors. We then systematically study the impact of various combinations of graph augm…
Perfect Alignment May be Poisonous to Graph Contrastive Learning
Gaoling School of Artificial Intelligence, Renmin University of China（中国人民大学高瓴人工智能学院）；Beijing Key Laboratory of Big Data Management and Analysis Methods（北京大数据管理与分析方法重点实验室）
Beijing University of Posts and Telecommunications（北京邮电大学）；Peng Cheng Laboratory（鹏城实验室）；Simon Fraser University（西蒙菲莎大学）
Graph Contrastive Learning (GCL), learning the node representations by augmenting graphs, has attracted considerable attentions. Despite the proliferation of various graph augmentation strategies, some fundamental questions still remain unclear: what information is essentially encoded into the learned representations by GCL? Are there some general graph augmentation rules behind different augmentations? If so, what are they and what insights can they bring? In this paper, we answer these questions by establishing the connection between GCL and graph spectrum. By an experimental investigation i…
