This paper proposes a new methodology to perform Bayesian inference for a class of multidimensional Cox processes in which the intensity function is piecewise constant. Poisson processes with piecewise constant intensity functions are believed to be suitable to model a variety of point process phenomena and, given its simpler structure, are expected to provide more precise inference when compared to processes with non-parametric and continuously varying intensity functions. The partition of the space domain is flexibly determined by a level-set function of a latent Gaussian process. Despite the intractability of the likelihood function and the infinite dimensionality of the parameter space, inference is performed exactly, in the sense that no space discretization approximation is used and MCMC error is the only source of inaccuracy. That is achieved by using retrospective sampling techniques and devising a pseudo-marginal infinite-dimensional MCMC algorithm that converges to the exact target posterior distribution. Computational efficiency is favored by considering a nearest neighbor Gaussian process, allowing for the analysis of large datasets. An extension to consider spatiotemporal models is also proposed. The efficiency of the proposed methodology is investigated in simulated examples and its applicability is illustrated in the analysis of some real point process datasets.
In this paper we present a novel inference methodology to perform Bayesian inference for spatiotemporal Cox processes where the intensity function depends on a multivariate Gaussian process. Dynamic Gaussian processes are introduced to allow for evolution of the intensity function over discrete time. The novelty of the method lies on the fact that no discretisation error is involved despite the non-tractability of the likelihood function and infinite dimensionality of the problem. The method is based on a Markov chain Monte Carlo algorithm that samples from the joint posterior distribution of …
The Cox process is a stochastic process which generalises the Poisson process by letting the underlying intensity function itself be a stochastic process. In this paper we present a fast Bayesian inference scheme for the permanental process, a Cox process under which the square root of the intensity is a Gaussian process. In particular we exploit connections with reproducing kernel Hilbert spaces, to derive efficient approximate Bayesian inference algorithms based on the Laplace approximation to the predictive distribution and marginal likelihood. We obtain a simple algorithm which we apply to…
We study adaptive sensing of Cox point processes, a widely used model from spatial statistics. We introduce three tasks: maximization of captured events, search for the maximum of the intensity function and learning level sets of the intensity function. We model the intensity function as a sample from a truncated Gaussian process, represented in a specially constructed positive basis. In this basis, the positivity constraint on the intensity function has a simple form. We show how an minimal description positive basis can be adapted to the covariance kernel, non-stationarity and make connectio…
Gaussian process (GP) modulated Cox processes are widely used to model point patterns. Existing approaches require a mapping (link function) between the unconstrained GP and the positive intensity function. This commonly yields solutions that do not have a closed form or that are restricted to specific covariance functions. We introduce a novel finite approximation of GP-modulated Cox processes where positiveness conditions can be imposed directly on the GP, with no restrictions on the covariance function. Our approach can also ensure other types of inequality constraints (e.g. monotonicity, c…
In geostatistics, the design for data collection is central for accurate prediction and parameter inference. One important class of geostatistical models is log-Gaussian Cox process (LGCP) which is used extensively, for example, in ecology. However, there are no formal analyses on optimal designs for LGCP models. In this work, we develop a novel model-based experimental design for LGCP modeling of spatiotemporal point process data. We propose a new spatially balanced rejection sampling design which directs sampling to spatiotemporal locations that are a priori expected to provide most informat…
Statistical modeling of point patterns is an important and common problem in several areas. The Poisson process is the most common process used for this purpose, in particular, its generalization that considers the intensity function to be stochastic. This is called a Cox process and different choices to model the dynamics of the intensity gives rise to a wide range of models. We present a new class of unidimensional Cox process models in which the intensity function assumes parametric functional forms that switch among them according to a continuous-time Markov chain. A novel methodology is p…
We consider a particular Cox process from a Bayesian viewpoint and show that the Bayes estimator of the intensity measure is the so-called Pólya sum kernel, which occurred recently in the context of the construction of the so-called Papangelou processes. More precisely, if the prior, the directing measure of the Cox process, is a Poisson-Gamma random measure, then the posterior is again a Poisson-Gamma random measure and the Bayes estimator of the intensity is the Pólya sum kernel. Moreover, we extend this result to doubly stochastic Poisson-Gamma priors and give conditions under which one can…
We view the locations and times of a collection of crime events as a space-time point pattern. So, with either a nonhomogeneous Poisson process or with a more general Cox process, we need to specify a space-time intensity. For the latter, we need a \emph{random} intensity which we model as a realization of a spatio-temporal log Gaussian process. Importantly, we view time as circular not linear, necessitating valid separable and nonseparable covariance functions over a bounded spatial region crossed with circular time. In addition, crimes are classified by crime type. Furthermore, each crime ev…
Bayesian Estimation of Continuous Brain Connectivity with Log-Gaussian Cox Processes
Duke University（杜克大学）；University of South Carolina（南卡罗来纳大学）；University of Wisconsin-Madison（威斯康星大学麦迪逊分校）；University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）
University of Warwick（华威大学）；CSIRO’s Data61（澳大利亚联邦科学与工业研究组织Data61研究所）；The Alan Turing Institute（艾伦·图灵研究所）；UNSW（新南威尔士大学）
We generalize the log Gaussian Cox process (LGCP) framework to model multiple correlated point data jointly. The observations are treated as realizations of multiple LGCPs, whose log intensities are given by linear combinations of latent functions drawn from Gaussian process priors. The combination coefficients are also drawn from Gaussian processes and can incorporate additional dependencies. We derive closed-form expressions for the moments of the intensity functions and develop an efficient variational inference algorithm that is orders of magnitude faster than competing deterministic and s…
We present an approximate Bayesian inference approach for estimating the intensity of an inhomogeneous Poisson process, where the intensity function is modelled using a Gaussian process (GP) prior via a sigmoid link function. Augmenting the model using a latent marked Poisson process and Pólya--Gamma random variables we obtain a representation of the likelihood which is conjugate to the GP prior. We estimate the posterior using a variational free--form mean field optimisation together with the framework of sparse GPs. Furthermore, as alternative approximation we suggest a sparse Laplace's meth…
The log-Gaussian Cox process (LGCP) is a popular point process for modeling non-interacting spatial point patterns. This paper extends the LGCP model to handle data exhibiting fundamentally different behaviors in different subregions of the spatial domain. The aim of the analyst might be either to identify and classify these regions, to perform kriging, or to derive some properties of the parameters driving the random field in one or several of the subregions. The extension is based on replacing the latent Gaussian random field in the LGCP by a latent spatial mixture model. The mixture model i…
The log-Gaussian Cox process is a flexible and popular class of point pattern models for capturing spatial and space-time dependence for point patterns. Model fitting requires approximation of stochastic integrals which is implemented through discretization over the domain of interest. With fine scale discretization, inference based on Markov chain Monte Carlo is computationally burdensome because of the cost of matrix decompositions and storage, such as the Cholesky, for high dimensional covariance matrices associated with latent Gaussian variables. This article addresses these computational …
This paper introduces a new approach to inferring the second order properties of a multivariate log Gaussian Cox process (LGCP) with a complex intensity function. We assume a semi-parametric model for the multivariate intensity function containing an unspecified complex factor common to all types of points. Given this model we exploit the availability of several types of points to construct a second-order conditional composite likelihood to infer the pair correlation and cross pair correlation functions of the LGCP. Crucially this likelihood does not depend on the unspecified part of the inten…
Spatial point pattern data are routinely encountered. A flexible regression model for the underlying intensity is essential to characterizing the spatial point pattern and understanding the impacts of potential risk factors on such pattern. We propose a Bayesian semiparametric regression model where the observed spatial points follow a spatial Poisson process with an intensity function which adjusts a nonparametric baseline intensity with multiplicative covariate effects. The baseline intensity is piecewise constant, approached with a powered Chinese restaurant process prior which prevents an …
In this paper we provide theoretical support for the so-called "Sigmoidal Gaussian Cox Process" approach to learning the intensity of an inhomogeneous Poisson process on a $d$-dimensional domain. This method was proposed by Adams, Murray and MacKay (ICML, 2009), who developed a tractable computational approach and showed in simulation and real data experiments that it can work quite satisfactorily. The results presented in the present paper provide theoretical underpinning of the method. In particular, we show how to tune the priors on the hyper parameters of the model in order for the procedu…
Point processes in time have a wide range of applications that include the claims arrival process in insurance or the analysis of queues in operations research. Due to advances in technology, such samples of point processes are increasingly encountered. A key object of interest is the local intensity function. It has a straightforward interpretation that allows to understand and explore point process data. We consider functional approaches for point processes, where one has a sample of repeated realizations of the point process. This situation is inherently connected with Cox processes, where …
We introduce a new class of spatial Cox processes driven by a Hilbert--valued random log--intensity. We adopt a parametric framework in the spectral domain, to estimate its spatial functional correlation structure. Specifically, we consider a spectral functional, based on the periodogram operator, inspired on Whittle estimation methodology. Strong-consistency of the parametric estimator is proved in the linear case. We illustrate this property in a simulation study under a Gaussian first order Spatial Autoregressive Hilbertian scenario for the log--intensity model. Our method is applied to the…
What Influences the Field Goal Attempts of Professional Players? Analysis of Basketball Shot Charts via Log Gaussian Cox Processes with Spatially Varying Coefficients
We study the problem of non-parametric Bayesian estimation of the intensity function of a Poisson point process. The observations are $n$ independent realisations of a Poisson point process on the interval $[0,T]$. We propose two related approaches. In both approaches we model the intensity function as piecewise constant on $N$ bins forming a partition of the interval $[0,T]$. In the first approach the coefficients of the intensity function are assigned independent gamma priors, leading to a closed form posterior distribution. On the theoretical side, we prove that as $n\rightarrow\infty,$ the…
University of Technology Sydney（悉尼科技大学）；University of New South Wales（新南威尔士大学）；Fudan University（复旦大学）
Modelling exchangeable relational data can be described by \textit{graphon theory}. Most Bayesian methods for modelling exchangeable relational data can be attributed to this framework by exploiting different forms of graphons. However, the graphons adopted by existing Bayesian methods are either piecewise-constant functions, which are insufficiently flexible for accurate modelling of the relational data, or are complicated continuous functions, which incur heavy computational costs for inference. In this work, we introduce a smoothing procedure to piecewise-constant graphons to form {\em smoo…
We present a new class of cluster point process models, which we call determinantal shot noise Cox processes (DSNCP), with repulsion between cluster centres. They are the special case of generalized shot noise Cox processes where the cluster centres are determinantal point processes. We establish various moment results and describe how these can be used to easily estimate unknown parameters in two particularly tractable cases, namely when the offspring density is isotropic Gaussian and the kernel of the determinantal point process of cluster centres is Gaussian or like in a scaled Ginibre poin…
In this paper, the panel count data analysis for recurrent events is considered. Such analysis is useful for studying tumor or infection recurrences in both clinical trial and observational studies. A bivariate Gaussian Cox process model is proposed to jointly model the observation process and the recurrent event process. Bayesian nonparametric inference is proposed for simultaneously estimating regression parameters, bivariate frailty effects and baseline intensity functions. Inference is done through Markov chain Monte Carlo, with fully developed computational techniques. Predictive inferenc…
We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influen…
Prior specifications for hyperparameters of random fields in Bayesian spatial point process modelling can have a major impact on the statistical inference and the conclusions made. We consider fitting of log-Gaussian Cox processes to spatial point patterns relative to spatial covariate data. From an ecological point of view, an important aim of the analysis is to assess significant associations between the covariates and the point pattern intensity of a given species. This paper introduces the use of a reparameterised model to facilitate meaningful interpretations of the results and how these …
In this paper we first describe the class of log-Gaussian Cox processes (LGCPs) as models for spatial and spatio-temporal point process data. We discuss inference, with a particular focus on the computational challenges of likelihood-based inference. We then demonstrate the usefulness of the LGCP by describing four applications: estimating the intensity surface of a spatial point process; investigating spatial segregation in a multi-type process; constructing spatially continuous maps of disease risk from spatially discrete data; and real-time health surveillance. We argue that problems of thi…
Although ambulance call data typically come in the form of spatio-temporal point patterns, point process-based modelling approaches presented in the literature are scarce. In this paper, we study a unique set of Swedish spatio-temporal ambulance call data, which consist of the spatial (GPS) locations of the calls (within the four northernmost regions of Sweden) and the associated days of occurrence of the calls (January 1, 2014, to December 31, 2018). Motivated by the nature of the data, we here employ log-Gaussian Cox processes (LGCPs) for the spatio-temporal modelling and forecasting of the …
Research on the earthquake occurrences using a statistical methodology based on point processes has mainly focused on the data featuring earthquake catalogs which ignores the effect of environmental variables. In this paper, we introduce inhomogeneous versions of the Cox process models which are able to quantify the effect of geological factors such as subduction zone, fault, and volcano on the major earthquake distribution in Sulawesi and Maluku, Indonesia. In particular, we compare Thomas, Cauchy, variance-Gamma, and log-Gaussian Cox models and consider parametric intensity and pair correlat…
We consider a class of Cox models with time-dependent effects that may be zero over certain unknown time regions or, in short, sparse time-varying effects. The model is particularly useful for biomedical studies as it conveniently depicts the gradual evolution of effects of risk factors on survival. Statistically, estimating and drawing inference on infinite dimensional functional parameters with sparsity (e.g., time-varying effects with zero-effect time intervals) present enormous challenges. To address them, we propose a new soft-thresholding operator for modeling sparse, piecewise smooth an…
Generalized evolutionary point processes offer a class of point process models that allows for either excitation or inhibition based upon the history of the process. In this regard, we propose modeling which comprises generalization of the nonlinear Hawkes process. Working within a Bayesian framework, model fitting is implemented through Markov chain Monte Carlo. This entails discussion of computation of the likelihood for such point patterns. Furthermore, for this class of models, we discuss strategies for model comparison. Using simulation, we illustrate how well we can distinguish these mod…
Many astrophysical phenomena are time-varying, in the sense that their intensity, energy spectrum, and/or the spatial distribution of the emission suddenly change. This paper develops a method for modeling a time series of images. Under the assumption that the arrival times of the photons follow a Poisson process, the data are binned into 4D grids of voxels (time, energy band, and x-y coordinates), and viewed as a time series of non-homogeneous Poisson images. The method assumes that at each time point, the corresponding multi-band image stack is an unknown 3D piecewise constant function inclu…
