We experimentally and theoretically study the dynamics of a low-Reynolds number helical swimmer moving across viscosity gradients. Experimentally, a double-layer viscosity is generated by superposing two miscible fluids with similar densities but different dynamic viscosities. A synthetic helical magnetically-driven swimmer is then made to move across the viscosity gradients along four different configurations: either head-first (pusher swimmer) or tail-first (puller), and through either positive (i.e. going from low to high viscosity) or negative viscosity gradients. We observe qualitative differences in the penetration dynamics for each case. We find that the swimming speed can either increase or decrease while swimming across the viscosity interface, which results from the fact that the head and the tail of the swimmer can be in environments in which the local viscosity leads to different relative amounts of drag and thrust. In order to rationalize the experimental measurements, we next develop a theoretical hydrodynamic model. We assume that the classical resistive-force theory of slender filaments is locally valid along the helical propeller and use it to calculate the swimming speed as a function of the position of the swimmer relative to the fluid-fluid interface. The predictions of the model agree well with experiments for the case of positive viscosity gradients. When crossing across a negative gradient, gravitational forces in the experiment become important, and we modify the model to include buoyancy, which agrees with experiments. In general our results show that it is harder for a pusher swimmer to cross from low to high viscosity, whereas for a puller swimmer it is the opposite. Our model is also extended to the case of a swimmer crossing a continuous viscosity gradient.
We conduct experiments with force-free magnetically-driven rigid helical swimmers in Newtonian and viscoelastic (Boger) fluids. By varying the sizes of the swimmer body and its helical tail, we show that the impact of viscoelasticity strongly depends on the swimmer geometry: it can lead to a significant increase of the swimming speed (up to a factor of five), a similar decrease (also up to a factor of five) or it can have approximately no impact. Analysis of our data along with theoretical modeling shows that the influence of viscoelasticity on helical propulsion is controlled by a snowman-lik…
We investigate the effects of helical swimmer shape (i.e., helical pitch angle and tail thickness) on swimming dynamics in a constant viscosity viscoelastic (Boger) fluid via a combination of particle tracking velocimetry, particle image velocimetry and 3D simulations of the FENE-P model. The 3D printed helical swimmer is actuated in a magnetic field using a custom-built rotating Helmholtz coil. Our results indicate that increasing the swimmer tail thickness and pitch angle enhances the normalized swimming speed (i.e., ratio of swimming speed in the Boger fluid to that of the Newtonian fluid).…
Swimming microorganisms often have to propel in complex, non-Newtonian fluids. We carry out experiments with self-propelling helical swimmers driven by an externally rotating magnetic field in shear-thinning, inelastic fluids. Similarly to swimming in a Newtonian fluid, we obtain for each fluid a locomotion speed which scales linearly with the rotation frequency of the swimmer, but with a prefactor which depends on the power index of the fluid. The fluid is seen to always increase the swimming speed of the helix, up to 50% faster and thus the strongest of such type reported to date. The maximu…
We apply the geometric theory of swimming at low Reynolds number to the study of nearly circular swimmers in two-dimensional fluids with non-vanishing Hall, or "odd", viscosity. The Hall viscosity gives an off-diagonal contribution to the fluid stress-tensor, which results in a number of striking effects. In particular, we find that a swimmer whose area is changing will experience a torque proportional to the rate of change of the area, with the constant of proportionality given by the coefficient $η^o$ of odd viscosity. After working out the general theory of swimming in fluids with Hall visc…
In this paper we are interested in optimizing the shape of multi-flagellated helical microswimmers. Mimicking the propagation of helical waves along the flagella, they self-propel by rotating their tails. The swimmer's dynamics is computed using the Boundary Element Method, implemented in the open source Matlab library $Gypsilab$. We exploit a Bayesian optimization algorithm to maximize the swimmer's speeds through their shape optimization. Our results show that the optimal tail shapes are helices with large wavelength, such that the shape periodicity is disregarded. Moreover, the best propuls…
The effects of fluid viscosity on the kinematics of a small swimmer at low Reynolds number are investigated in both experiments and in a simple model. The swimmer is the nematode Caenorhabditis elegans, which is an undulating roundworm approximately 1 mm long. Experiments show that the nematode maintains a highly periodic swimming behavior as the fluid viscosity is varied from 1.0 mPa-s to 12 mPa-s. Surprisingly, the nematode's swimming speed (~0.35 mm/s) is nearly insensitive to the range of fluid viscosities investigated here. However, the nematode's beating frequency decreases to an asympto…
The motion of microswimmers in complex flows is ruled by the interplay between swimmer propulsion and the dynamics induced by the fluid velocity field. Here we study the motion of a chiral microswimmer whose propulsion is provided by the spinning of a helical tail with respect to its body in a simple shear flow. Thanks to an efficient computational strategy that allowed us to simulate thousands of different trajectories, we show that the tail shape dramatically affects the swimmer's motion. In the shear dominated regime, the swimmers carrying an elliptical helical tail show several different J…
The bacterium Helicobacter pylori causes ulcers in the stomach of humans by invading mucus layers protecting epithelial cells. It does so by chemically changing the rheological properties of the mucus from a high-viscosity gel to a low-viscosity solution in which it may self-propel. We develop a two-fluid model for this process of swimming under self-generated confinement. We solve exactly for the flow and the locomotion speed of a spherical swimmer located in a spherically symmetric system of two Newtonian fluids whose boundary moves with the swimmer. We also treat separately the special case…
In isotropic helical turbulence, a new single helical model is suggested for large eddy simulation. Based on the Kolmogrov's hypotheses, the helical model is proposed according to the balance of helicity dissipation and the average of helicity flux across the inertial range, and the helical model is a kind of eddy viscosity model. The coefficient of the helical model is constant and can be also determined dynamically. Numerical simulations of forced and decaying isotropic helical turbulence demonstrate that the helical model predicts the energy and helicity evolution well. The statistical char…
In several biologically relevant situations, cell locomotion occurs in polymeric fluids with Weissenberg {number} larger than one. Here we present results of three-dimensional numerical simulations for the steady locomotion of a self-propelled body in a model polymeric (Giesekus) fluid at low Reynolds number. Locomotion is driven by steady tangential deformation at the surface of the body (so-called squirming motion). In the case of a spherical squirmer, we show that the swimming velocity is systematically less than that in a Newtonian fluid, with a minimum occurring for Weissenberg numbers of…
The ciliary locomotion and feeding of an axisymmetric micro-swimmer in a complex fluid whose viscosity depends on nutrient concentration are investigated numerically. The micro-swimmer is modeled as having spheroidal geometry, and ciliary beating is modeled by a slip velocity; i.e. a squirmer is adapted. Looking at the coupling between swimming and feeding of spheroidal squirmers, it is found that swimming speed and feeding are most affected by a non-uniform viscosity environment when the ratio of advection-forces to diffusion-transport, characterized by the nondimensional Peclét number, is mo…
We study synchronization in bulk suspensions of spherical microswimmers with chiral trajectories using large scale numerics. The model is generic. It corresponds to the lowest order solution of a general model for self-propulsion at low Reynolds numbers, consisting of a nonaxisymmetric rotating source dipole. We show that both purely circular and helical swimmers can spontaneously synchronize their rotation. The synchronized state corresponds to velocity alignment with high orientational order in both the polar and azimuthal directions. Finally, we consider a racemic mixture of helical swimmer…
Shear-thinning is an important rheological property of many biological fluids, such as mucus, whereby the apparent viscosity of the fluid decreases with shear. Certain microscopic swimmers have been shown to progress more rapidly through shear-thinning fluids, but is this behavior generic to all microscopic swimmers, and what are the physics through which shear-thinning rheology affects a swimmer's propulsion? We examine swimmers employing prescribed stroke kinematics in two-dimensional, inertialess Carreau fluid: shear-thinning "Generalized Stokes" flow. Swimmers are modeled, using the method…
We study the coupled hydrodynamics between a motile slender microswimmer and a deformable interface that separates two Newtonian fluid regions. From the disturbance field generated by the swimming motion, we quantitatively characterize the interface deformation and the manner in which the coupling modifies the microswimmer translation itself. We treat the role of the swimmer type (pushers and pullers), size and model an interface that can deform due to both surface tension and bending elasticity. Our analysis reveals a strong dependence of the hydrodynamics on the swimmer orientation and posit…
Flagellated bacteria exploiting helical propulsion are known to swim along circular trajectories near surfaces. Fluid dynamics predicts this circular motion to be clockwise (CW) above a rigid surface (when viewed from inside the fluid) and counter-clockwise (CCW) below a free surface. Recent experimental investigations showed that complex physicochemical processes at the nearby surface could lead to a change in the direction of rotation, both at solid surfaces absorbing slip-inducing polymers and interfaces covered with surfactants. Motivated by these results, we use a far-field hydrodynamic m…
We use the boundary element method to study the low-Reynolds number locomotion of a spherical model microorganism in a circular tube. The swimmer propels itself by tangen- tial or normal surface motion in a tube whose radius is on the order of the swimmer size. Hydrodynamic interactions with the tube walls significantly affect the average swimming speed and power consumption of the model microorganism. In the case of swimming parallel to the tube axis, the locomotion speed is always reduced (resp. increased) for swimmers with tangential (resp. normal) deformation. In all cases, the rate of wor…
The swimming behaviour of microorganisms can be strongly influenced by the rheology of their fluid environment. In this manuscript, we experimentally investigate the effects of shear-thinning viscosity on the swimming behaviour of an undulatory swimmer, the nematode Caenorhabditis elegans. Tracking methods are used to measure the swimmer's kinematic data (including propulsion speed) and velocity fields. We find that shear-thinning viscosity modifies the velocity fields produced by the swimming nematode but does not modify the nematode's speed and beating kinematics. Velocimetry data show signi…
Swimming cells often have to self-propel through fluids displaying non-Newtonian rheology. While past theoretical work seems to indicate that stresses arising from complex fluids should systematically hinder low-Reynolds number locomotion, experimental observations suggest that locomotion enhancement is possible. In this paper we propose a physical mechanism for locomotion enhancement of microscopic swimmers in a complex fluid. It is based on the fact that micro-structured fluids will generically phase-separate near surfaces, leading to the presence of low-viscosity layers which promote slip a…
Many natural and engineering systems involve the mixing of two fluid streams, in which the effects of density and viscosity gradients play important roles in determining flow stability. We perform linear stability calculations for a jet emerging into an ambient medium of a different viscosity but the same density. These calculations are intended to isolate the effects of viscosity variation alone. We conduct a systematic study of the effect of ambient-to-jet viscosity ratio, jet Reynolds number and the velocity profile specified by the shear layer thickness, the thickness over which the viscos…
Magnetically driven artificial microswimmers have the potential to revolutionize many biomedical technologies, such as minimally-invasive microsurgery, micro-particle manipulation, and localized drug delivery. However, many of these applications will require the controlled dynamics of teams of these micro-robots with minimal feedback. In this work, we study the motion and fluid dynamics produced by groups of artificial microswimmers driven by a torque induced through a uniform, rotating magnetic field. Through Stokesian dynamics simulations, we show that the swimmer motion produces a rotationa…
Many microorganisms live and evolve in complex fluids. Examples include mammalian spermatozoa in cervical mucus, worms (e.g., \textit{C. elegans}) in wet soil, and bacteria (e.g., \textit{H. pylori}) in our stomach lining. Due to the presence of (bio)polymers and/or solids, such fluids often display nonlinear response to (shear) stresses including viscoelasticity and shear-rate dependent viscosity. The successful interaction between these microorganisms and their fluid environment is critical to the function of many biological processes including human reproduction, ecosystem dynamics, and the…
Microscale propulsion is integral to numerous biomedical systems, for example biofilm formation and human reproduction, where the surrounding fluids comprise suspensions of polymers. These polymers endow the fluid with non-Newtonian rheological properties, such as shear-thinning and viscoelasticity. Thus, the complex dynamics of non-Newtonian fluids presents numerous modelling challenges, strongly motivating experimental study. Here, we demonstrate that failing to account for "out-of-plane" effects when analysing experimental data of undulatory swimming through a shear-thinning fluid results i…
Helical propulsion is used by many microorganisms to swim in viscous-dominated environments. Their swimming dynamics are relatively well understood, but detailed study of the flow fields and actuation mechanisms are still needed to realize wall effects and hydrodynamic interactions. In this letter, we describe the development of an autonomous swimming robot with a helical tail that operates in the Stokes regime. The device uses a battery-based power system with a miniature motor that imposes a rotational speed to a helical tail. The speed, direction, and activation are controlled electronicall…
Similarly to their biological counterparts, suspensions of chemically-active autophoretic swimmers exhibit nontrivial dynamics involving self-organization processes as a result of inter-particle interactions. Using a kinetic model for a dilute suspension of autochemotactic Janus particles, we analyse the effect of a confined pressure-driven flow on these collective behaviours and the impact of chemotactic aggregation on the effective viscosity of the active fluid. Four dynamic regimes are identified when increasing the strength of the imposed pressure-driven flow, each associated with a differ…
Numerous natural processes are contingent on microorganisms' ability to swim through fluids with non-Newtonian rheology. Here, we use the model organism Caenorhabditis elegans and tracking methods to experimentally investigate the dynamics of undulatory swimming in shear-thinning fluids. Theory and simulation have proposed that the cost of swimming, or mechanical power, should be lower in a shear-thinning fluid compared to a Newtonian fluid of the same zero-shear viscosity. We aim to provide an experimental investigation into the cost of swimming in a shear-thinning fluid from (i) an estimate …
Active particles (living or synthetic) often move through inhomogeneous environments, such as gradients in light, heat or nutrient concentration, that can lead to directed motion (or taxis). Recent research has explored inhomogeneity in the rheological properties of a suspending fluid, in particular viscosity, as a mechanical (rather than biological) mechanism for taxis. Theoretical and experimental studies have shown that gradients in viscosity can lead to reorientation due to asymmetric viscous forces. In particular, recent experiments with Chlamydomonas reinhardtii algae swimming across sha…
An axisymmetric squirmer in a Bingham viscoplastic fluid is studied numerically to determine the effect of a yield stress environment on locomotion. The nonlinearity of the governing equations necessitates numerical methods, which is accomplished by solving a variable-viscosity Stokes equation with a Finite Element approach. The effects of stroke modes, both pure and combined, are investigated and it is found that for the treadmill or "neutral" mode, the swimmer in a yield stress fluid has a lower swimming velocity and uses more power. However, the efficiency of swimming reaches its maximum at…
A GPU-Accelerated Fully Coupled Fluid-Solid-Thermal SPH Solver for Industrial Gearboxes: Application to Lubricant Flow and Heat Transfer in a Bevel-Helical Reducer
Microorganisms are rarely found in Nature swimming freely in an unbounded fluid. Instead, they typically encounter other organisms, hard walls, or deformable boundaries such as free interfaces or membranes. Hydrodynamic interactions between the swimmer and nearby objects lead to many interesting phenomena, such as changes in swimming speed, tendencies to accumulate or turn, and coordinated flagellar beating. Inspired by this class of problems, we investigate locomotion of microorganisms near deformable boundaries. We calculate the speed of an infinitely long swimmer close to a flexible surface…
We consider the stirring of an inviscid fluid caused by the locomotion of bodies through it. The swimmers are approximated by non-interacting cylinders or spheres moving steadily along straight lines. We find the displacement of fluid particles caused by the nearby passage of a swimmer as a function of an impact parameter. We use this to compute the effective diffusion coefficient from the random walk of a fluid particle under the influence of a distribution of swimming bodies. We compare with the results of simulations. For typical sizes, densities and swimming velocities of schools of krill,…
A liquid droplet, immersed into a Newtonian fluid, can be propelled solely by internal flow. In a simple model, this flow is generated by a collection of point forces, which represent externally actuated devices or model autonomous swimmers. We work out the general framework to compute the self-propulsion of the droplet as a function of the actuating forces and their positions within the droplet. A single point force, F with general orientation and position, r_0, gives rise to both, translational and rotational motion of the droplet. We show that the translational mobility is anisotropic and t…
We study the orientational and translational dynamics of spherical microswimmers trapped at fluid interfaces, in terms of the force dipole and source dipole components of their flow field. Using numerical simulations and analytical calculations, we show that the force dipole exerts a torque, orienting pushers parallel to the interface, and pullers in normal direction. The source dipole results in particle rotation only for a finite viscosity contrast between the two fluids, in agreement with previous studies. The superposition of these two contributions leads to an rotational dynamics with a s…
We present a study of spectral laws for helical turbulence in the presence of solid body rotation up to Reynolds numbers Re~1*10^5 and down to Rossby numbers Ro~3*10^-3. The forcing function is a fully helical flow that can also be viewed as mimicking the effect of atmospheric convective motions. We test in the helical case variants of a model developed previously (Baerenzung et al. 2008a) against direct numerical simulations (DNS), using data from a run on a grid of 15363 points; we also contrast its efficiency against a spectral Large Eddy Simulation (LES) (Chollet and Lesieur 1981) as well …
Low-cost coin vibrational motors, used in haptic feedback, exhibit rotational internal motion inside a rigid case. Because the motor case motion exhibits rotational symmetry, when placed into a fluid such as glycerin, the motor does not swim even though its vibrations induce steady streaming in the fluid. However, a piece of rubber foam stuck to the curved case and giving the motor neutral buoyancy also breaks the rotational symmetry allowing it to swim. We measured a 1 cm diameter coin vibrational motor swimming in glycerin at a speed of a body length in 3 seconds or at 3 mm/s. The swim speed…
