Consider the population model with infinite size associated to subcritical continuous-state branching processes (CSBP). Individuals reproduce independently according to the same subcritical offspring distribution. We study the long-term behaviour of the ancestral lineages as time goes to the past and show that the flow of ancestral lineages, properly renormalized, converges almost surely to the inverse of a drift-free subordinator whose Laplace exponent is explicit in terms of the branching mechanism. We provide an interpretation in terms of the genealogy of the population. In particular, we show that the inverse subordinator is partitioning the current population into ancestral families with distinct common ancestors. When Grey's condition is satisfied, the population comes from a discrete set of ancestors and the ancestral families are i.i.d and distributed according to the quasi-stationary distribution of the CSBP conditioned on non-extinction. When Grey's condition is not satisfied, the population comes from a continuum of ancestors which is described as the set of increase points $\mathscr{S}$ of the limiting inverse subordinator. The Hausdorff dimension of $\mathscr{S}$ is given. The proof is based on a general result for stochastically monotone processes of independent interest, which relates $θ$-invariant measures and $θ$-invariant functions for a process and its Siegmund dual.
We give a short overview on our work on ancestral lineages in spatial population models with local regulation. We explain how an ancestral lineage can be interpreted as a random walk in a dynamic random environment. Defining regeneration times allows to prove central limit theorems for such walks. We also consider several ancestral lineages in the same population and show for one prototypical example that in one dimension the corresponding system of coalescing walks converges to the Brownian web.
We consider a branching model in discrete time where each individual has a trait in some general state space. Both the reproduction law and the trait inherited by the offsprings may depend on the trait of the mother and the environment. We study the long time behavior of the population and the ancestral lineage of typical individuals under general assumptions, which we specify for applications to some models motivated by biology. Our results focus on the growth rate, the trait distribution among the population for large time, so as local densities and the position of extremal individuals. The …
We are interested in the dynamic of a structured branching population where the trait of each individual moves according to a Markov process. The rate of division of each individual is a function of its trait and when a branching event occurs, the trait of a descendant at birth depends on the trait of the mother. We prove a law of large numbers for the empirical distribution of ancestral trajectories. It ensures that the empirical measure converges to the mean value of the spine which is a time-inhomogeneous Markov process describing the trait of a typical individual along its ancestral lineag…
Empirical distribution of ancestral lineages in populations with density-dependent interactions
Centre de Mathématiques Appliquées (CMAP), Ecole Polytechnique（巴黎综合理工学院应用数学中心）；Institute of Ecology and Environmental Sciences (iEES), Sorbonne Université（索邦大学生态与环境科学研究所）
Consider a branching process with a homogeneous reproduction law. Sampling a single cell uniformly from the population at a time $T > 0$ and looking along the sampled cell's ancestral lineage, we find that the reproduction law is heterogeneous - the expected reproductive output of ancestral cells on the lineage from time $0$ to time $T$ continuously increases. This `inspection paradox' is due to sampling bias, that cells with a larger number of offspring are more likely to have one of their descendants sampled by virtue of their prolificity, and the bias's strength grows with the random popula…
Consider a continuous-state branching population constructed as a flow of nested subordinators. Inverting the subordinators and reversing time give rise to a flow of coalescing Markov processes (with negative jumps) which correspond to the ancestral lineages of individuals in the current generation. The process of the ancestral lineage of a fixed individual is the Siegmund dual process of the continuous-state branching process. We study its semi-group, its long-term behavior and its generator. In order to follow the coalescences in the ancestral lineages and to describe the backward genealogy …
For supercritical multitype branching processes in continuous time, we investigate the evolution of types along those lineages that survive up to some time t. We establish almost-sure convergence theorems for both time and population averages of ancestral types (conditioned on non-extinction), and identify the mutation process describing the type evolution along typical lineages. An important tool is a representation of the family tree in terms of a suitable size-biased tree with trunk. As a by-product, this representation allows a `conceptual proof' (in the sense of Kurtz, Lyons, Pemantle, Pe…
A large offspring number diploid biparental multilocus population model of Moran type is our object of study. At each timestep, a pair of diploid individuals drawn uniformly at random contribute offspring to the population. The number of offspring can be large relative to the total population size. Similar `heavily skewed' reproduction mechanisms have been considered by various authors recently. Each diploid parental individual contributes exactly one chromosome to each diploid offspring, and hence ancestral lineages can only coalesce when in distinct individuals. A separation of timescales ph…
We define a multi-type coalescent point process of a general branching process with finitely many types. This multi-type coalescent fully describes the genealogy of the (quasi-stationary) standing population, providing types along ancestral lineages of all individuals in the standing population. We show that this point-process is a functional of a certain Markov chain defined by the planar embedding of the branching process. This Markov chain is further used to determine statistical properties of the ancestral tree, such as the time to the most recent common ancestor (MRCA) of two consecutive …
We present a new model for seed banks, where direct ancestors of individuals may have lived in the near as well as the very far past. The classical Wright-Fisher model, as well as a seed bank model with bounded age distribution considered by Kaj, Krone and Lascoux (2001) are special cases of our model. We discern three parameter regimes of the seed bank age distribution, which lead to substantially different behaviour in terms of genetic variability, in particular with respect to fixation of types and time to the most recent common ancestor. We prove that for age distributions with finite mean…
The sample frequency spectrum of a segregating site is the probability distribution of a sample of alleles from a genetic locus, conditional on observing the sample to have more than one clearly different phenotypes. We present a model for analyzing quadri-allele frequency spectrum, where the ancestral population diverged into three populations at a certain divergence time and the resulting mutations on the branches of the coalescent tree gave rise to three different derived alleles, which could be observed in the present generation along with the ancestral allele. The model has been analyzed …
We ask the question "when will natural selection on a gene in a spatially structured population cause a detectable trace in the patterns of genetic variation observed in the contemporary population?". We focus on the situation in which 'neighbourhood size', that is the effective local population density, is small. The genealogy relating individuals in a sample from the population is embedded in a spatial version of the ancestral selection graph and through applying a diffusive scaling to this object we show that whereas in dimensions at least three, selection is barely impeded by the spatial s…
We consider an initial Eve-population and a population of neutral mutants, such that the total population dies out in finite time. We describe the evolution of the Eve-population and the total population with continuous state branching processes, and the neutral mutation procedure can be seen as an immigration process with intensity proportional to the size of the population. First we establish a Williams' decomposition of the genealogy of the total population given by a continuous random tree, according to the ancestral lineage of the last individual alive. This allows us give a closed formul…
We present a model for growth in a multi-species population. We consider two types evolving as a logistic branching process with mutation, where one of the types has a selective advantage, and are interested in the regime in which the carrying capacity of the system goes to $\infty$. We first study the genealogy of the population up until it almost reaches carrying capacity through a coupling with an independent branching process. We then focus on the phase in which the population has reached carrying capacity. After recovering a Gillespie--Wright--Fisher SDE in the infinite carrying capacity …
We consider a stochastic individual-based population model with competition, trait-structure affecting reproduction and survival, and changing environment. The changes of traits are described by jump processes, and the dynamics can be approximated in large population by a non-linear PDE with a non-local mutation operator. Using the fact that this PDE admits a non-trivial stationary solution, we can approximate the non-linear stochastic population process by a linear birth-death process where the interactions are frozen, as long as the population remains close to this equilibrium. This allows u…
