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arXiv 2011.12865eess.IVcs.CVq-bio.NC

Contrastive Representation Learning for Whole Brain Cytoarchitectonic Mapping in Histological Human Brain Sections

Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich(于利希研究中心神经科学与医学研究所(INM-1));Helmholtz AI, Research Centre Jülich(于利希研究中心亥姆霍兹人工智能);Institute of Computer Science, Heinrich-Heine-University Düsseldorf(杜塞尔多夫海因里希·海涅大学计算机科学研究所)

Christian Schiffer, Katrin Amunts, Stefan Harmeling, Timo Dickscheid

英文摘要:

Cytoarchitectonic maps provide microstructural reference parcellations of the brain, describing its organization in terms of the spatial arrangement of neuronal cell bodies as measured from histological tissue sections. Recent work provided the first automatic segmentations of cytoarchitectonic areas in the visual system using Convolutional Neural Networks. We aim to extend this approach to become applicable to a wider range of brain areas, envisioning a solution for mapping the complete human brain. Inspired by recent success in image classification, we propose a contrastive learning objective for encoding microscopic image patches into robust microstructural features, which are efficient for cytoarchitectonic area classification. We show that a model pre-trained using this learning task outperforms a model trained from scratch, as well as a model pre-trained on a recently proposed auxiliary task. We perform cluster analysis in the feature space to show that the learned representations form anatomically meaningful groups.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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