We describe our participation in all five rounds of the TREC 2020 COVID Track (TREC-COVID). The goal of TREC-COVID is to contribute to the response to the COVID-19 pandemic by identifying answers to many pressing questions and building infrastructure to improve search systems [8]. All five rounds of this Track challenged participants to perform a classic ad-hoc search task on the new data collection CORD-19. Our solution addressed this challenge by applying the Continuous Active Learning model (CAL) and its variations. Our results showed us to be amongst the top scoring manual runs and we remained competitive within all categories of submissions.
TREC-COVID is a community evaluation designed to build a test collection that captures the information needs of biomedical researchers using the scientific literature during a pandemic. One of the key characteristics of pandemic search is the accelerated rate of change: the topics of interest evolve as the pandemic progresses and the scientific literature in the area explodes. The COVID-19 pandemic provides an opportunity to capture this progression as it happens. TREC-COVID, in creating a test collection around COVID-19 literature, is building infrastructure to support new research and techno…
We present an overview of the TREC-COVID Challenge, an information retrieval (IR) shared task to evaluate search on scientific literature related to COVID-19. The goals of TREC-COVID include the construction of a pandemic search test collection and the evaluation of IR methods for COVID-19. The challenge was conducted over five rounds from April to July, 2020, with participation from 92 unique teams and 556 individual submissions. A total of 50 topics (sets of related queries) were used in the evaluation, starting at 30 topics for Round 1 and adding 5 new topics per round to target emerging to…
In this paper, we describe our participation in the TREC Health Misinformation Track 2020. We submitted $11$ runs to the Total Recall Task and 13 runs to the Ad Hoc task. Our approach consists of 3 steps: (1) we create an initial run with BM25 and RM3; (2) we estimate credibility and misinformation scores for the documents in the initial run; (3) we merge the relevance, credibility and misinformation scores to re-rank documents in the initial run. To estimate credibility scores, we implement a classifier which exploits features based on the content and the popularity of a document. To compute …
Search engine users rarely express an information need using the same query, and small differences in queries can lead to very different result sets. These user query variations have been exploited in past TREC CORE tracks to contribute diverse, highly-effective runs in offline evaluation campaigns with the goal of producing reusable test collections. In this paper, we document the query fusion runs submitted to the first and second round of TREC COVID, using ten queries per topic created by the first author. In our analysis, we focus primarily on the effects of having our second priority run …
We explore how to generate effective queries based on search tasks. Our approach has three main steps: 1) identify search tasks based on research goals, 2) manually classify search queries according to those tasks, and 3) compare three methods to improve search rankings based on the task context. The most promising approach is based on expanding the user's query terms using task terms, which slightly improved the NDCG@20 scores over a BM25 baseline. Further improvements might be gained if we can identify more specific search tasks.
In this paper, we report the results of our participation in the TREC-COVID challenge. To meet the challenge of building a search engine for rapidly evolving biomedical collection, we propose a simple yet effective weighted hierarchical rank fusion approach, that ensembles together 102 runs from (a) lexical and semantic retrieval systems, (b) pre-trained and fine-tuned BERT rankers, and (c) relevance feedback runs. Our ablation studies demonstrate the contributions of each of these systems to the overall ensemble. The submitted ensemble runs achieved state-of-the-art performance in rounds 4 an…
University of Copenhagen（哥本哈根大学）；Aalborg University（奥尔堡大学）
This report describes the participation of two Danish universities, University of Copenhagen and Aalborg University, in the international search engine competition on COVID-19 (the 2020 TREC-COVID Challenge) organised by the U.S. National Institute of Standards and Technology (NIST) and its Text Retrieval Conference (TREC) division. The aim of the competition was to find the best search engine strategy for retrieving precise biomedical scientific information on COVID-19 from the largest, at that point in time, dataset of curated scientific literature on COVID-19 -- the COVID-19 Open Research D…
Neural rankers based on deep pretrained language models (LMs) have been shown to improve many information retrieval benchmarks. However, these methods are affected by their the correlation between pretraining domain and target domain and rely on massive fine-tuning relevance labels. Directly applying pretraining methods to specific domains may result in suboptimal search quality because specific domains may have domain adaption problems, such as the COVID domain. This paper presents a search system to alleviate the special domain adaption problem. The system utilizes the domain-adaptive pretra…
This paper describes our participation to the 2022 TREC Deep Learning challenge. We submitted runs to all four tasks, with a focus on the full retrieval passage task. The strategy is almost the same as 2021, with first stage retrieval being based around SPLADE, with some added ensembling with ColBERTv2 and DocT5. We also use the same strategy of last year for the second stage, with an ensemble of re-rankers trained using hard negatives selected by SPLADE. Initial result analysis show that the strategy is still strong, but is still unclear to us what next steps should we take.
The COVID-19 pandemic has resulted in a tremendous need for access to the latest scientific information, primarily through the use of text mining and search tools. This has led to both corpora for biomedical articles related to COVID-19 (such as the CORD-19 corpus (Wang et al., 2020)) as well as search engines to query such data. While most research in search engines is performed in the academic field of information retrieval (IR), most academic search engines$\unicode{x2013}$though rigorously evaluated$\unicode{x2013}$are sparsely utilized, while major commercial web search engines (e.g., Goo…
The TREC 2017 Common Core Track aimed at gathering a diverse set of participating runs and building a new test collection using advanced pooling methods. In this paper, we describe the participation of the IlpsUvA team at the TREC 2017 Common Core Track. We submitted runs created using two methods to the track: (1) BOIR uses Bayesian optimization to automatically optimize retrieval model hyperparameters. (2) NVSM is a latent vector space model where representations of documents and query terms are learned from scratch in an unsupervised manner. We find that BOIR is able to optimize hyperparame…
The novel coronavirus disease 2019 (COVID-19) began in Wuhan, China in late 2019 and to date has infected over 14M people worldwide, resulting in over 750,000 deaths. On March 10, 2020 the World Health Organization (WHO) declared the outbreak a global pandemic. Many academics and researchers, not restricted to the medical domain, began publishing papers describing new discoveries. However, with the large influx of publications, it was hard for these individuals to sift through the large amount of data and make sense of the findings. The White House and a group of industry research labs, lead b…
CSIRO Data61（澳大利亚联邦科学与工业研究组织 Data61）；The Australian National University（澳大利亚国立大学）
Finding answers related to a pandemic of a novel disease raises new challenges for information seeking and retrieval, as the new information becomes available gradually. TREC COVID search track aims to assist in creating search tools to aid scientists, clinicians, policy makers and others with similar information needs in finding reliable answers from the scientific literature. We experiment with different ranking algorithms as part of our participation in this challenge. We propose a novel method for neural retrieval, and demonstrate its effectiveness on the TREC COVID search.
Georgetown University（乔治城大学）；Allen Institute for AI（艾伦人工智能研究所）
With worldwide concerns surrounding the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), there is a rapidly growing body of scientific literature on the virus. Clinicians, researchers, and policy-makers need to be able to search these articles effectively. In this work, we present a zero-shot ranking algorithm that adapts to COVID-related scientific literature. Our approach filters training data from another collection down to medical-related queries, uses a neural re-ranking model pre-trained on scientific text (SciBERT), and filters the target document collection. This approach …
PASH at TREC 2021 Deep Learning Track: Generative Enhanced Model for Multi-stage Ranking
Ping An Health Technology, Beijing, China Peking University, Beijing, China Ping An Property \& Casualty Insurance Company, Shenzhen, China Central University of Finance；Economics, Beijing, China Ping An Health Cloud Company Limited., Shenzhen, China Ping An International Smart City Technology Co., Ltd., Shenzhen, China
This contribution summarizes the participation of the UNIMIB team to the TREC 2021 Clinical Trials Track. We have investigated the effect of different query representations combined with several retrieval models on the retrieval performance. First, we have implemented a neural re-ranking approach to study the effectiveness of dense text representations. Additionally, we have investigated the effectiveness of a novel decision-theoretic model for relevance estimation. Finally, both of the above relevance models have been compared with standard retrieval approaches. In particular, we combined a k…
University of Waterloo（滑铁卢大学）；University of Delaware（特拉华大学）；New York University（纽约大学）；CIFAR（加拿大高等研究院）
We present Covidex, a search engine that exploits the latest neural ranking models to provide information access to the COVID-19 Open Research Dataset curated by the Allen Institute for AI. Our system has been online and serving users since late March 2020. The Covidex is the user application component of our three-pronged strategy to develop technologies for helping domain experts tackle the ongoing global pandemic. In addition, we provide robust and easy-to-use keyword search infrastructure that exploits mature fusion-based methods as well as standalone neural ranking models that can be inco…
Georgetown University（乔治城大学）；Allen Institute for AI（艾伦人工智能研究所）
With worldwide concerns surrounding the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), there is a rapidly growing body of literature on the virus. Clinicians, researchers, and policy-makers need a way to effectively search these articles. In this work, we present a search system called SLEDGE, which utilizes SciBERT to effectively re-rank articles. We train the model on a general-domain answer ranking dataset, and transfer the relevance signals to SARS-CoV-2 for evaluation. We observe SLEDGE's effectiveness as a strong baseline on the TREC-COVID challenge (topping the learderboa…
Despite growing calls for participation in AI design, there are to date few empirical studies of what these processes look like and how they can be structured for meaningful engagement with domain experts. In this paper, we examine a notable yet understudied AI design process in the legal domain that took place over a decade ago, the impact of which still informs legal automation efforts today. Specifically, we examine the design and evaluation activities that took place from 2006 to 2011 within the TeXT Retrieval Conference's (TREC) Legal Track, a computational research venue hosted by the Na…
The University of Melbourne（墨尔本大学）；RMIT University（皇家墨尔本理工大学）
The COVID-19 pandemic has driven ever-greater demand for tools which enable efficient exploration of biomedical literature. Although semi-structured information resulting from concept recognition and detection of the defining elements of clinical trials (e.g. PICO criteria) has been commonly used to support literature search, the contributions of this abstraction remain poorly understood, especially in relation to text-based retrieval. In this study, we compare the results retrieved by a standard search engine with those filtered using clinically-relevant concepts and their relations. With ana…
The COVID-19 global pandemic has resulted in international efforts to understand, track, and mitigate the disease, yielding a significant corpus of COVID-19 and SARS-CoV-2-related publications across scientific disciplines. As of May 2020, 128,000 coronavirus-related publications have been collected through the COVID-19 Open Research Dataset Challenge. Here we present CO-Search, a retriever-ranker semantic search engine designed to handle complex queries over the COVID-19 literature, potentially aiding overburdened health workers in finding scientific answers during a time of crisis. The retri…
The Coronavirus (COVID-19) pandemic has led to a rapidly growing 'infodemic' of health information online. This has motivated the need for accurate semantic search and retrieval of reliable COVID-19 information across millions of documents, in multiple languages. To address this challenge, this paper proposes a novel high precision and high recall neural Multistage BiCross encoder approach. It is a sequential three-stage ranking pipeline which uses the Okapi BM25 retrieval algorithm and transformer-based bi-encoder and cross-encoder to effectively rank the documents with respect to the given q…
Information overload is a prevalent challenge in many high-value domains. A prominent case in point is the explosion of the biomedical literature on COVID-19, which swelled to hundreds of thousands of papers in a matter of months. In general, biomedical literature expands by two papers every minute, totalling over a million new papers every year. Search in the biomedical realm, and many other vertical domains is challenging due to the scarcity of direct supervision from click logs. Self-supervised learning has emerged as a promising direction to overcome the annotation bottleneck. We propose a…
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health（美国国立卫生研究院国家医学图书馆国家生物技术信息中心）；Children's Hospital of Philadelphia（费城儿童医院）；University of Pennsylvania Perelman School of Medicine（宾夕法尼亚大学佩雷尔曼医学院）；Beijing University of Technology（北京工业大学）；Concordia University（康考迪亚大学）；Navrachana University（纳夫拉查纳大学）；Taipei Medical University（台北医学大学）；Dalian University of Technology（大连理工大学）；University of Ljubljana（卢布尔雅那大学）；Jožef Stefan Institute（约泽夫·斯蒂芬研究所）；Florida State University（佛罗里达州立大学）；University of Melbourne（墨尔本大学）；RMIT University（皇家墨尔本理工大学）；University of Edinburgh（爱丁堡大学）；University College London（伦敦大学学院）；Nantes University（南特大学）；Avignon University（阿维尼翁大学）；Indian Institute of Technology Delhi（印度理工学院德里分校）；Opscidia（Opscidia公司）；The Hong Kong Polytechnic University（香港理工大学）；Heidelberg University（海德堡大学）；Bosch Center for Artificial Intelligence（博世人工智能中心）；Universidad de Jaén（哈恩大学）；TCS Research（塔塔咨询服务公司研究部）
The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One…
