Researchers have been overwhelmed by the explosion of research articles published by various research communities. Many research scholarly websites, search engines, and digital libraries have been created to help researchers identify potential research topics and keep up with recent progress on research of interests. However, it is still difficult for researchers to keep track of the research topic diffusion and evolution without spending a large amount of time reviewing numerous relevant and irrelevant articles. In this paper, we consider a novel topic diffusion discovery technique. Specifically, we propose using a Deep Non-negative Autoencoder with information divergence measurement that monitors evolutionary distance of the topic diffusion to understand how research topics change with time. The experimental results show that the proposed approach is able to identify the evolution of research topics as well as to discover topic diffusions in online fashions.
This paper proposes the continuous semantic topic embedding model (CSTEM) which finds latent topic variables in documents using continuous semantic distance function between the topics and the words by means of the variational autoencoder(VAE). The semantic distance could be represented by any symmetric bell-shaped geometric distance function on the Euclidean space, for which the Mahalanobis distance is used in this paper. In order for the semantic distance to perform more properly, we newly introduce an additional model parameter for each word to take out the global factor from this distance …
Recent progress in autoencoder-based sparse identification of nonlinear dynamics (SINDy) under $\ell_1$ constraints allows joint discoveries of governing equations and latent coordinate systems from spatio-temporal data, including simulated video frames. However, it is challenging for $\ell_1$-based sparse inference to perform correct identification for real data due to the noisy measurements and often limited sample sizes. To address the data-driven discovery of physics in the low-data and high-noise regimes, we propose Bayesian SINDy autoencoders, which incorporate a hierarchical Bayesian sp…
Massachusetts Institute of Technology（麻省理工学院）；Woods Hole Oceanographic Institution（伍兹霍尔海洋研究所）
The gap between our ability to collect interesting data and our ability to analyze these data is growing at an unprecedented rate. Recent algorithmic attempts to fill this gap have employed unsupervised tools to discover structure in data. Some of the most successful approaches have used probabilistic models to uncover latent thematic structure in discrete data. Despite the success of these models on textual data, they have not generalized as well to image data, in part because of the spatial and temporal structure that may exist in an image stream. We introduce a novel unsupervised machine le…
Due to recent explosion of text data, researchers have been overwhelmed by ever-increasing volume of articles produced by different research communities. Various scholarly search websites, citation recommendation engines, and research databases have been created to simplify the text search tasks. However, it is still difficult for researchers to be able to identify potential research topics without doing intensive reviews on a tremendous number of articles published by journals, conferences, meetings, and workshops. In this paper, we consider a novel topic diffusion discovery technique that in…
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；University of Chicago（芝加哥大学）
Time-lagged autoencoders (TAEs) have been proposed as a deep learning regression-based approach to the discovery of slow modes in dynamical systems. However, a rigorous analysis of nonlinear TAEs remains lacking. In this work, we discuss the capabilities and limitations of TAEs through both theoretical and numerical analyses. Theoretically, we derive bounds for nonlinear TAE performance in slow mode discovery and show that in general TAEs learn a mixture of slow and maximum variance modes. Numerically, we illustrate cases where TAEs can and cannot correctly identify the leading slowest mode in…
The paper addresses the problem of finding the causal direction between two associated variables. The proposed solution is to build an autoencoder of their joint distribution and to maximize its estimation capacity relative to both the marginal distributions. It is shown that the resulting two capacities cannot, in general, be equal. This leads to a new criterion for causal discovery: the higher capacity is consistent with the unconstrained choice of a distribution representing the cause while the lower capacity reflects the constraints imposed by the mechanism on the distribution of the effec…
Boarding for ISS: Imbalanced Self-Supervised: Discovery of a Scaled Autoencoder for Mixed Tabular Datasets
Université Claude Bernard Lyon 1（里昂第一大学）；Aix Marseille Université（艾克斯-马赛大学）；CNRS（法国国家科学研究中心）；Centrale Marseille（马赛中央理工学院）；I2M（数学与力学研究所）；Université du Québec à Montréal（蒙特利尔大学）
We propose a parsimonious topic model for text corpora. In related models such as Latent Dirichlet Allocation (LDA), all words are modeled topic-specifically, even though many words occur with similar frequencies across different topics. Our modeling determines salient words for each topic, which have topic-specific probabilities, with the rest explained by a universal shared model. Further, in LDA all topics are in principle present in every document. By contrast our model gives sparse topic representation, determining the (small) subset of relevant topics for each document. We derive a Bayes…
The problem of estimating event truths from conflicting agent opinions in a social network is investigated. An autoencoder learns the complex relationships between event truths, agent reliabilities and agent observations. A Bayesian network model is proposed to guide the learning process by modeling the relationship of the autoencoder's outputs with different variables. At the same time, it also models the social relationships between agents in the network. The proposed approach is unsupervised and is applicable when ground truth labels of events are unavailable. A variational inference method…
Distributions are fundamental statistical elements that play essential theoretical and practical roles. The article discusses experiences of training neural networks to classify univariate empirical distributions and to represent them on the two-dimensional latent space forcing disentanglement based on the inputs of cumulative distribution functions (CDF). The latent space representation has been performed using an unsupervised beta variational autoencoder (beta-VAE). It separates distributions of different shapes while overlapping similar ones and empirically realises relationships between di…
Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. Generative deep learning models have been used for molecular representation, discovery, and design. In this work, we assess the predictive capabilities of a molecular generative model developed based on variational inference and graph theory in the small data regime. Physical constraints that encourage energetically stable molecules are proposed. The encoding network is based on the scattering transform with adaptive spectral filters to allow for bette…
Boston University（波士顿大学）；University of California Riverside（加州大学河滨分校）
Topic discovery has witnessed a significant growth as a field of data mining at large. In particular, time-evolving topic discovery, where the evolution of a topic is taken into account has been instrumental in understanding the historical context of an emerging topic in a dynamic corpus. Traditionally, time-evolving topic discovery has focused on this notion of time. However, especially in settings where content is contributed by a community or a crowd, an orthogonal notion of time is the one that pertains to the level of expertise of the content creator: the more experienced the creator, the…
We present algorithms for topic modeling based on the geometry of cross-document word-frequency patterns. This perspective gains significance under the so called separability condition. This is a condition on existence of novel-words that are unique to each topic. We present a suite of highly efficient algorithms based on data-dependent and random projections of word-frequency patterns to identify novel words and associated topics. We will also discuss the statistical guarantees of the data-dependent projections method based on two mild assumptions on the prior density of topic document matrix…
Many predictive tasks, such as diagnosing a patient based on their medical chart, are ultimately defined by the decisions of human experts. Unfortunately, encoding experts' knowledge is often time consuming and expensive. We propose a simple way to use fuzzy and informal knowledge from experts to guide discovery of interpretable latent topics in text. The underlying intuition of our approach is that latent factors should be informative about both correlations in the data and a set of relevance variables specified by an expert. Mathematically, this approach is a combination of the information b…
We develop necessary and sufficient conditions and a novel provably consistent and efficient algorithm for discovering topics (latent factors) from observations (documents) that are realized from a probabilistic mixture of shared latent factors that have certain properties. Our focus is on the class of topic models in which each shared latent factor contains a novel word that is unique to that factor, a property that has come to be known as separability. Our algorithm is based on the key insight that the novel words correspond to the extreme points of the convex hull formed by the row-vectors …
Macromolecular and biomolecular folding landscapes typically contain high free energy barriers that impede efficient sampling of configurational space by standard molecular dynamics simulation. Biased sampling can artificially drive the simulation along pre-specified collective variables (CVs), but success depends critically on the availability of good CVs associated with the important collective dynamical motions. Nonlinear machine learning techniques can identify such CVs but typically do not furnish an explicit relationship with the atomic coordinates necessary to perform biased sampling. I…
University of South Carolina（南卡罗来纳大学）；Johns Hopkins University（约翰斯·霍普金斯大学）；University of Maryland Baltimore County（马里兰大学巴尔的摩县分校）
The majority of medical documents and electronic health records (EHRs) are in text format that poses a challenge for data processing and finding relevant documents. Looking for ways to automatically retrieve the enormous amount of health and medical knowledge has always been an intriguing topic. Powerful methods have been developed in recent years to make the text processing automatic. One of the popular approaches to retrieve information based on discovering the themes in health & medical corpora is topic modeling, however, this approach still needs new perspectives. In this research we descr…
A new geometrically-motivated algorithm for nonnegative matrix factorization is developed and applied to the discovery of latent "topics" for text and image "document" corpora. The algorithm is based on robustly finding and clustering extreme points of empirical cross-document word-frequencies that correspond to novel "words" unique to each topic. In contrast to related approaches that are based on solving non-convex optimization problems using suboptimal approximations, locally-optimal methods, or heuristics, the new algorithm is convex, has polynomial complexity, and has competitive qualitat…
Huazhong University of Science and Technology（华中科技大学）；Cornell University（康奈尔大学）
Separable Non-negative Matrix Factorization (SNMF) is an important method for topic modeling, where "separable" assumes every topic contains at least one anchor word, defined as a word that has non-zero probability only on that topic. SNMF focuses on the word co-occurrence patterns to reveal topics by two steps: anchor word selection and topic recovery. The quality of the anchor words strongly influences the quality of the extracted topics. Existing anchor word selection algorithm is to greedily find an approximate convex hull in a high-dimensional word co-occurrence space. In this work, we pr…
We propose an algorithm for detecting patterns exhibited by anomalous clusters in high dimensional discrete data. Unlike most anomaly detection (AD) methods, which detect individual anomalies, our proposed method detects groups (clusters) of anomalies; i.e. sets of points which collectively exhibit abnormal patterns. In many applications this can lead to better understanding of the nature of the atypical behavior and to identifying the sources of the anomalies. Moreover, we consider the case where the atypical patterns exhibit on only a small (salient) subset of the very high dimensional featu…
Latent Dirichlet allocation (LDA) is widely used for unsupervised topic modelling on sets of documents. No temporal information is used in the model. However, there is often a relationship between the corresponding topics of consecutive tokens. In this paper, we present an extension to LDA that uses a Markov chain to model temporal information. We use this new model for acoustic unit discovery from speech. As input tokens, the model takes a discretised encoding of speech from a vector quantised (VQ) neural network with 512 codes. The goal is then to map these 512 VQ codes to 50 phone-like unit…
University of Edinburgh（爱丁堡大学）；The Alan Turing Institute（艾伦·图灵研究所）；Google Brain（谷歌大脑）
The Pachinko Allocation Machine (PAM) is a deep topic model that allows representing rich correlation structures among topics by a directed acyclic graph over topics. Because of the flexibility of the model, however, approximate inference is very difficult. Perhaps for this reason, only a small number of potential PAM architectures have been explored in the literature. In this paper we present an efficient and flexible amortized variational inference method for PAM, using a deep inference network to parameterize the approximate posterior distribution in a manner similar to the variational auto…
To train an inference network jointly with a deep generative topic model, making it both scalable to big corpora and fast in out-of-sample prediction, we develop Weibull hybrid autoencoding inference (WHAI) for deep latent Dirichlet allocation, which infers posterior samples via a hybrid of stochastic-gradient MCMC and autoencoding variational Bayes. The generative network of WHAI has a hierarchy of gamma distributions, while the inference network of WHAI is a Weibull upward-downward variational autoencoder, which integrates a deterministic-upward deep neural network, and a stochastic-downward…
