In this paper, we consider the problem of recovering a sparse signal from noisy linear measurements using the so called LASSO formulation. We assume a correlated Gaussian design matrix with additive Gaussian noise. We precisely analyze the high dimensional asymptotic performance of the LASSO under correlated design matrices using the Convex Gaussian Min-max Theorem (CGMT). We define appropriate performance measures such as the mean-square error (MSE), probability of support recovery, element error rate (EER) and cosine similarity. Numerical simulations are presented to validate the derived theoretical results.
University College London（伦敦大学学院）；Aalto University（阿尔托大学）
In many high dimensional classification or regression problems set in a biological context, the complete identification of the set of informative features is often as important as predictive accuracy, since this can provide mechanistic insight and conceptual understanding. Lasso and related algorithms have been widely used since their sparse solutions naturally identify a set of informative features. However, Lasso performs erratically when features are correlated. This limits the use of such algorithms in biological problems, where features such as genes often work together in pathways, leadi…
Although the Lasso has been extensively studied, the relationship between its prediction performance and the correlations of the covariates is not fully understood. In this paper, we give new insights into this relationship in the context of multiple linear regression. We show, in particular, that the incorporation of a simple correlation measure into the tuning parameter can lead to a nearly optimal prediction performance of the Lasso even for highly correlated covariates. However, we also reveal that for moderately correlated covariates, the prediction performance of the Lasso can be mediocr…
We consider estimation in a high-dimensional linear model with strongly correlated variables. We propose to cluster the variables first and do subsequent sparse estimation such as the Lasso for cluster-representatives or the group Lasso based on the structure from the clusters. Regarding the first step, we present a novel and bottom-up agglomerative clustering algorithm based on canonical correlations, and we show that it finds an optimal solution and is statistically consistent. We also present some theoretical arguments that canonical correlation based clustering leads to a better-posed comp…
Lasso is a popular and efficient approach to simultaneous estimation and variable selection in high-dimensional regression models. In this paper, a robust LAD-lasso method for multiple outcomes is presented that addresses the challenges of non-normal outcome distributions and outlying observations. Measured covariate data from space or time, or spectral bands or genomic positions often have natural correlation structure arising from measuring distance between the covariates. The proposed multi-outcome approach includes handling of such covariate blocks by a group fusion penalty, which encourag…
INRIA（法国国家信息与自动化研究所）；Laboratoire d’Informatique de l’École Normale Supérieure（巴黎高等师范学院计算机实验室）
Using the $\ell_1$-norm to regularize the estimation of the parameter vector of a linear model leads to an unstable estimator when covariates are highly correlated. In this paper, we introduce a new penalty function which takes into account the correlation of the design matrix to stabilize the estimation. This norm, called the trace Lasso, uses the trace norm, which is a convex surrogate of the rank, of the selected covariates as the criterion of model complexity. We analyze the properties of our norm, describe an optimization algorithm based on reweighted least-squares, and illustrate the beh…
In this paper, we introduce Adaptive Cluster Lasso(ACL) method for variable selection in high dimensional sparse regression models with strongly correlated variables. To handle correlated variables, the concept of clustering or grouping variables and then pursuing model fitting is widely accepted. When the dimension is very high, finding an appropriate group structure is as difficult as the original problem. The ACL is a three-stage procedure where, at the first stage, we use the Lasso(or its adaptive or thresholded version) to do initial selection, then we also include those variables which a…
A classical problem that arises in numerous signal processing applications asks for the reconstruction of an unknown, $k$-sparse signal $x_0\in R^n$ from underdetermined, noisy, linear measurements $y=Ax_0+z\in R^m$. One standard approach is to solve the following convex program $\hat x=\arg\min_x \|y-Ax\|_2 + λ\|x\|_1$, which is known as the $\ell_2$-LASSO. We assume that the entries of the sensing matrix $A$ and of the noise vector $z$ are i.i.d Gaussian with variances $1/m$ and $σ^2$. In the large system limit when the problem dimensions grow to infinity, but in constant rates, we \emph{pre…
Université Paris Saclay（巴黎萨克雷大学）；Inria（法国国家信息与自动化研究所）；CEA（法国原子能和替代能源委员会）；Univ. Montpellier（蒙彼利埃大学）；CNRS（法国国家科学研究中心）
Sparsity promoting norms are frequently used in high dimensional regression. A limitation of such Lasso-type estimators is that the optimal regularization parameter depends on the unknown noise level. Estimators such as the concomitant Lasso address this dependence by jointly estimating the noise level and the regression coefficients. Additionally, in many applications, the data is obtained by averaging multiple measurements: this reduces the noise variance, but it dramatically reduces sample sizes and prevents refined noise modeling. In this work, we propose a concomitant estimator that can c…
This work proposes an adaptive trace lasso regularized L1-norm based graph cut method for dimensionality reduction of Hyperspectral images, called as `Trace Lasso-L1 Graph Cut' (TL-L1GC). The underlying idea of this method is to generate the optimal projection matrix by considering both the sparsity as well as the correlation of the data samples. The conventional L2-norm used in the objective function is sensitive to noise and outliers. Therefore, in this work L1-norm is utilized as a robust alternative to L2-norm. Besides, for further improvement of the results, we use a penalty function of t…
In 2015, Barber and Candes introduced a new variable selection procedure called the knockoff filter to control the false discovery rate (FDR) and prove that this method achieves exact FDR control. Inspired by the work of Barber and Candes (2015), we propose and analyze a pseudo-knockoff filter that inherits some advantages of the original knockoff filter and has more flexibility in constructing its knockoff matrix. Moreover, we perform a number of numerical experiments that seem to suggest that the pseudo knockoff filter with the half Lasso statistic has FDR control and offers more power than …
We consider the problem of model selection and estimation in sparse high dimensional linear regression models with strongly correlated variables. First, we study the theoretical properties of the dual Lasso solution, and we show that joint consideration of the Lasso primal and its dual solutions are useful for selecting correlated active variables. Second, we argue that correlations among active predictors are not problematic, and we derive a new weaker condition on the design matrix, called Pseudo Irrepresentable Condition (PIC). Third, we present a new variable selection procedure, Dual Lass…
Consider estimating an unknown, but structured, signal $x_0\in R^n$ from $m$ measurement $y_i=g_i(a_i^Tx_0)$, where the $a_i$'s are the rows of a known measurement matrix $A$, and, $g$ is a (potentially unknown) nonlinear and random link-function. Such measurement functions could arise in applications where the measurement device has nonlinearities and uncertainties. It could also arise by design, e.g., $g_i(x)=\text{sign}(x+z_i)$, corresponds to noisy 1-bit quantized measurements. Motivated by the classical work of Brillinger, and more recent work of Plan and Vershynin, we estimate $x_0$ via …
In this paper we consider the conservative Lasso which we argue penalizes more correctly than the Lasso and show how it may be desparsified in the sense of van de Geer et al. (2014) in order to construct asymptotically honest (uniform) confidence bands. In particular, we develop an oracle inequality for the conservative Lasso only assuming the existence of a certain number of moments. This is done by means of the Marcinkiewicz-Zygmund inequality. We allow for heteroskedastic non-subgaussian error terms and covariates. Next, we desparsify the conservative Lasso estimator and derive the asymptot…
Recently, the precise performance of the Generalized LASSO algorithm for recovering structured signals from compressed noisy measurements, obtained via i.i.d. Gaussian matrices, has been characterized. The analysis is based on a framework introduced by Stojnic and heavily relies on the use of Gordon's Gaussian min-max theorem (GMT), a comparison principle on Gaussian processes. As a result, corresponding characterizations for other ensembles of measurement matrices have not been developed. In this work, we analyze the corresponding performance of the ensemble of isotropically random orthogonal…
We study a group lasso estimator for the multivariate linear regression model that accounts for correlated error terms. A block coordinate descent algorithm is used to compute this estimator. We perform a simulation study with categorical data and multivariate time series data, typical settings with a natural grouping among the predictor variables. Our simulation studies show the good performance of the proposed group lasso estimator compared to alternative estimators. We illustrate the method on a time series data set of gene expressions.
Contextual multi-armed bandit algorithms are widely used in sequential decision tasks such as news article recommendation systems, web page ad placement algorithms, and mobile health. Most of the existing algorithms have regret proportional to a polynomial function of the context dimension, $d$. In many applications however, it is often the case that contexts are high-dimensional with only a sparse subset of size $s_0 (\ll d)$ being correlated with the reward. We consider the stochastic linear contextual bandit problem and propose a novel algorithm, namely the Doubly-Robust Lasso Bandit algori…
Canonical correlation analysis (CCA for short) describes the relationship between two sets of variables by finding some linear combinations of these variables that maximizing the correlation coefficient. However, in high-dimensional settings where the number of variables exceeds sample size, or in the case of that the variables are highly correlated, the traditional CCA is no longer appropriate. In this paper, an adaptive sparse version of CCA (ASCCA for short) is proposed by using the trace Lasso regularization. The proposed ASCCA reduces the instability of the estimator when the covariates a…
Lasso is a celebrated method for variable selection in linear models, but it faces challenges when the variables are moderately or strongly correlated. This motivates alternative approaches such as using a non-convex penalty, adding a ridge regularization, or conducting a post-Lasso thresholding. In this paper, we compare Lasso with 5 other methods: Elastic net, SCAD, forward selection, thresholded Lasso, and forward backward selection. We measure their performances theoretically by the expected Hamming error, assuming that the regression coefficients are iid drawn from a two-point mixture and…
We propose a new sparse regression method called the component lasso, based on a simple idea. The method uses the connected-components structure of the sample covariance matrix to split the problem into smaller ones. It then solves the subproblems separately, obtaining a coefficient vector for each one. Then, it uses non-negative least squares to recombine the different vectors into a single solution. This step is useful in selecting and reweighting components that are correlated with the response. Simulated and real data examples show that the component lasso can outperform standard regressio…
We investigate the high-dimensional regression problem using adjacency matrices of unbalanced expander graphs. In this frame, we prove that the $\ell_{2}$-prediction error and the $\ell_{1}$-risk of the lasso and the Dantzig selector are optimal up to an explicit multiplicative constant. Thus we can estimate a high-dimensional target vector with an error term similar to the one obtained in a situation where one knows the support of the largest coordinates in advance. Moreover, we show that these design matrices have an explicit restricted eigenvalue. Precisely, they satisfy the restricted eige…
We consider the problem of estimating an unknown signal $x_0$ from noisy linear observations $y = Ax_0 + z\in R^m$. In many practical instances, $x_0$ has a certain structure that can be captured by a structure inducing convex function $f(\cdot)$. For example, $\ell_1$ norm can be used to encourage a sparse solution. To estimate $x_0$ with the aid of $f(\cdot)$, we consider the well-known LASSO method and provide sharp characterization of its performance. We assume the entries of the measurement matrix $A$ and the noise vector $z$ have zero-mean normal distributions with variances $1$ and $σ^2…
Sparse regularization such as $\ell_1$ regularization is a quite powerful and widely used strategy for high dimensional learning problems. The effectiveness of sparse regularization has been supported practically and theoretically by several studies. However, one of the biggest issues in sparse regularization is that its performance is quite sensitive to correlations between features. Ordinary $\ell_1$ regularization can select variables correlated with each other, which results in deterioration of not only its generalization error but also interpretability. In this paper, we propose a new reg…
In this paper, we are concerned with regularized regression problems where the prior regularizer is a proper lower semicontinuous and convex function which is also partly smooth relative to a Riemannian submanifold. This encompasses as special cases several known penalties such as the Lasso ($\ell^1$-norm), the group Lasso ($\ell^1-\ell^2$-norm), the $\ell^\infty$-norm, and the nuclear norm. This also includes so-called analysis-type priors, i.e. composition of the previously mentioned penalties with linear operators, typical examples being the total variation or fused Lasso penalties.We study…
Given an unknown signal $\mathbf{x}_0\in\mathbb{R}^n$ and linear noisy measurements $\mathbf{y}=\mathbf{A}\mathbf{x}_0+σ\mathbf{v}\in\mathbb{R}^m$, the generalized $\ell_2^2$-LASSO solves $\hat{\mathbf{x}}:=\arg\min_{\mathbf{x}}\frac{1}{2}\|\mathbf{y}-\mathbf{A}\mathbf{x}\|_2^2 + σλf(\mathbf{x})$. Here, $f$ is a convex regularization function (e.g. $\ell_1$-norm, nuclear-norm) aiming to promote the structure of $\mathbf{x}_0$ (e.g. sparse, low-rank), and, $λ\geq 0$ is the regularizer parameter. A related optimization problem, though not as popular or well-known, is often referred to as the gen…
We study the estimation capacity of the generalized Lasso, i.e., least squares minimization combined with a (convex) structural constraint. While Lasso-type estimators were originally designed for noisy linear regression problems, it has recently turned out that they are in fact robust against various types of model uncertainties and misspecifications, most notably, non-linearly distorted observation models. This work provides more theoretical evidence for this somewhat astonishing phenomenon. At the heart of our analysis stands the mismatch principle, which is a simple recipe to establish the…
Loyola Marymount University（洛约拉马利蒙特大学）；University of California Los Angeles（加州大学洛杉矶分校）
This work aims at recovering signals that are sparse on graphs. Compressed sensing offers techniques for signal recovery from a few linear measurements and graph Fourier analysis provides a signal representation on graph. In this paper, we leverage these two frameworks to introduce a new Lasso recovery algorithm on graphs. More precisely, we present a non-convex, non-smooth algorithm that outperforms the standard convex Lasso technique. We carry out numerical experiments on three benchmark graph datasets.
Tree ensembles distribute feature importance evenly amongst groups of correlated features. The average feature ranking of the correlated group is suppressed, which reduces interpretability and complicates feature selection. In this paper we present ControlBurn, a feature selection algorithm that uses a weighted LASSO-based feature selection method to prune unnecessary features from tree ensembles, just as low-intensity fire reduces overgrown vegetation. Like the linear LASSO, ControlBurn assigns all the feature importance of a correlated group of features to a single feature. Moreover, the alg…
The "least absolute shrinkage and selection operator" (Lasso) method has been adapted recently for networkstructured datasets. In particular, this network Lasso method allows to learn graph signals from a small number of noisy signal samples by using the total variation of a graph signal for regularization. While efficient and scalable implementations of the network Lasso are available, only little is known about the conditions on the underlying network structure which ensure network Lasso to be accurate. By leveraging concepts of compressed sensing, we address this gap and derive precise cond…
The high-dimensional linear model $y = X β^0 + ε$ is considered and the focus is put on the problem of recovering the support $S^0$ of the sparse vector $β^0.$ We introduce Lasso-Zero, a new $\ell_1$-based estimator whose novelty resides in an "overfit, then threshold" paradigm and the use of noise dictionaries concatenated to $X$ for overfitting the response. To select the threshold, we employ the quantile universal threshold based on a pivotal statistic that requires neither knowledge nor preliminary estimation of the noise level. Numerical simulations show that Lasso-Zero performs well in t…
The fused lasso, also known as (anisotropic) total variation denoising, is widely used for piecewise constant signal estimation with respect to a given undirected graph. The fused lasso estimate is highly nontrivial to compute when the underlying graph is large and has an arbitrary structure. But for a special graph structure, namely, the chain graph, the fused lasso---or simply, 1d fused lasso---can be computed in linear time. In this paper, we establish a surprising connection between the total variation of a generic signal defined over an arbitrary graph, and the total variation of this sig…
Stability selection (Meinshausen and Buhlmann, 2010) makes any feature selection method more stable by returning only those features that are consistently selected across many subsamples. We prove (in what is, to our knowledge, the first result of its kind) that for data containing highly correlated proxies for an important latent variable, the lasso typically selects one proxy, yet stability selection with the lasso can fail to select any proxy, leading to worse predictive performance than the lasso alone. We introduce cluster stability selection, which exploits the practitioner's knowledge t…
Comparison of the LASSO and Integrative LASSO with Penalty Factors (IPF-LASSO) methods for multi-omics data: Variable selection with Type I error control
We consider the high-dimensional sparse linear regression problem of accurately estimating a sparse vector using a small number of linear measurements that are contaminated by noise. It is well known that the standard cadre of computationally tractable sparse regression algorithms---such as the Lasso, Orthogonal Matching Pursuit (OMP), and their extensions---perform poorly when the measurement matrix contains highly correlated columns. To address this shortcoming, we develop a simple greedy algorithm, called SWAP, that iteratively swaps variables until convergence. SWAP is surprisingly effecti…
In high dimension, it is customary to consider Lasso-type estimators to enforce sparsity. For standard Lasso theory to hold, the regularization parameter should be proportional to the noise level, yet the latter is generally unknown in practice. A possible remedy is to consider estimators, such as the Concomitant/Scaled Lasso, which jointly optimize over the regression coefficients as well as over the noise level, making the choice of the regularization independent of the noise level. However, when data from different sources are pooled to increase sample size, or when dealing with multimodal …
The Convex Gaussian Min-Max Theorem (CGMT) has emerged as a prominent theoretical tool for analyzing the precise stochastic behavior of various statistical estimators in the so-called high dimensional proportional regime, where the sample size and the signal dimension are of the same order. However, a well recognized limitation of the existing CGMT machinery rests in its stringent requirement on the exact Gaussianity of the design matrix, therefore rendering the obtained precise high dimensional asymptotics largely a specific Gaussian theory in various important statistical models. This paper …
In this paper, we investigate a multivariate multi-response (MVMR) linear regression problem, which contains multiple linear regression models with differently distributed design matrices, and different regression and output vectors. The goal is to recover the support union of all regression vectors using $l_1/l_2$-regularized Lasso. We characterize sufficient and necessary conditions on sample complexity \emph{as a sharp threshold} to guarantee successful recovery of the support union. Namely, if the sample size is above the threshold, then $l_1/l_2$-regularized Lasso correctly recovers the s…
Many applications generate data with an intrinsic network structure such as time series data, image data or social network data. The network Lasso (nLasso) has been proposed recently as a method for joint clustering and optimization of machine learning models for networked data. The nLasso extends the Lasso from sparse linear models to clustered graph signals. This paper explores the duality of nLasso and network flow optimization. We show that, in a very precise sense, nLasso is equivalent to a minimum-cost flow problem on the data network structure. Our main technical result is a concise cha…
We consider the problem of recovering a $k$-sparse signal ${\mbox{$β$}}_0\in\mathbb{R}^p$ from noisy observations $\bf y={\bf X}\mbox{$β$}_0+{\bf w}\in\mathbb{R}^n$. One of the most popular approaches is the $l_1$-regularized least squares, also known as LASSO. We analyze the mean square error of LASSO in the case of random designs in which each row of ${\bf X}$ is drawn from distribution $N(0,{\mbox{$Σ$}})$ with general ${\mbox{$Σ$}}$. We first derive the asymptotic risk of LASSO in the limit of $n,p\rightarrow\infty$ with $n/p\rightarrowδ$. We then examine conditions on $n$, $p$, and $k$ for…
We add a set of convex constraints to the lasso to produce sparse interaction models that honor the hierarchy restriction that an interaction only be included in a model if one or both variables are marginally important. We give a precise characterization of the effect of this hierarchy constraint, prove that hierarchy holds with probability one and derive an unbiased estimate for the degrees of freedom of our estimator. A bound on this estimate reveals the amount of fitting "saved" by the hierarchy constraint. We distinguish between parameter sparsity - the number of nonzero coefficients - an…
Nowadays, l1 penalized likelihood has absorbed a high amount of consideration due to its simplicity and well developed theoretical properties. This method is known as a reliable method in order to apply in a broad range of applications including high-dimensional cases. On the other hand, $L_1$ driven methods, precisely lasso dependent regularizations, suffer the loss of sparsity when the number of observations is too low. In this paper we address a new differentiable approximation of lasso that can produce the same results as lasso and ridge and also can produce smooth results. We prove the th…
We propose a Bayesian procedure for simultaneous variable and covariance selection using continuous spike-and-slab priors in multivariate linear regression models where q possibly correlated responses are regressed onto p predictors. Rather than relying on a stochastic search through the high-dimensional model space, we develop an ECM algorithm similar to the EMVS procedure of Rockova & George (2014) targeting modal estimates of the matrix of regression coefficients and residual precision matrix. Varying the scale of the continuous spike densities facilitates dynamic posterior exploration and …
In this work, we show that under specific choices of the copula, the lasso, elastic net, and $g$-prior are particular cases of `copula prior,' for regularization and variable selection method. We present `lasso with Gauss copula prior' and `lasso with t-copula prior.' The simulation study and real-world data for regression, classification, and large time-series data show that the `copula prior' often outperforms the lasso and elastic net while having a comparable sparsity of representation. Also, the copula prior encourages a grouping effect. The strongly correlated predictors tend to be in or…
School of Mathematical and Physical Sciences, Macquarie University（麦考瑞大学数理科学学院）；School of Mathematics and Statistics, The University of Sydney（悉尼大学数学与统计学院）
本文提出在应用 Lasso 前对变量进行去相关，以提高变量选择的稳定性，并证明该方法在高维和低维数据上的有效性，开发了 DVS R 包。
Traditional variable selection methods could fail to be sign consistent when irrepresentable conditions are violated. This is especially critical in high-dimensional settings when the number of predictors exceeds the sample size. In this paper, we propose a new semi-standard partial covariance (SPAC) approach which is capable of reducing correlation effects from other covariates while fully capturing the magnitude of coefficients. The proposed SPAC is effective in choosing covariates which have direct effects on the response variable, while eliminating the predictors which are not directly ass…
