ASAP-Net: Attention and Structure Aware Point Cloud Sequence Segmentation

CFUN: Combining Faster R-CNN and U-net Network for Efficient Whole Heart Segmentation

In this paper, we propose a novel heart segmentation pipeline Combining Faster R-CNN and U-net Network (CFUN). Due to Faster R-CNN's precise localization ability and U-net's powerful segmentation ability, CFUN needs only one-step detection and segmentation inference to get the whole heart segmentation result, obtaining good results with significantly reduced computational cost. Besides, CFUN adopts a new loss function based on edge information named 3D Edge-loss as an auxiliary loss to accelerate the convergence of training and improve the segmentation results. Extensive experiments on the pub…

ET-Net: A Generic Edge-aTtention Guidance Network for Medical Image Segmentation

Segmentation is a fundamental task in medical image analysis. However, most existing methods focus on primary region extraction and ignore edge information, which is useful for obtaining accurate segmentation. In this paper, we propose a generic medical segmentation method, called Edge-aTtention guidance Network (ET-Net), which embeds edge-attention representations to guide the segmentation network. Specifically, an edge guidance module is utilized to learn the edge-attention representations in the early encoding layers, which are then transferred to the multi-scale decoding layers, fused usin…

FocusNet: An attention-based Fully Convolutional Network for Medical Image Segmentation

We propose a novel technique to incorporate attention within convolutional neural networks using feature maps generated by a separate convolutional autoencoder. Our attention architecture is well suited for incorporation with deep convolutional networks. We evaluate our model on benchmark segmentation datasets in skin cancer segmentation and lung lesion segmentation. Results show highly competitive performance when compared with U-Net and it's residual variant.

US-net for robust and efficient nuclei instance segmentation

We present a novel neural network architecture, US-Net, for robust nuclei instance segmentation in histopathology images. The proposed framework integrates the nuclei detection and segmentation networks by sharing their outputs through the same foundation network, and thus enhancing the performance of both. The detection network takes into account the high-level semantic cues with contextual information, while the segmentation network focuses more on the low-level details like the edges. Extensive experiments reveal that our proposed framework can strengthen the performance of both branch netw…

Recurrent U-Net for Resource-Constrained Segmentation

State-of-the-art segmentation methods rely on very deep networks that are not always easy to train without very large training datasets and tend to be relatively slow to run on standard GPUs. In this paper, we introduce a novel recurrent U-Net architecture that preserves the compactness of the original U-Net, while substantially increasing its performance to the point where it outperforms the state of the art on several benchmarks. We will demonstrate its effectiveness for several tasks, including hand segmentation, retina vessel segmentation, and road segmentation. We also introduce a large-s…

EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation

Automatic image segmentation technology is critical to the visual analysis. The autoencoder architecture has satisfying performance in various image segmentation tasks. However, autoencoders based on convolutional neural networks (CNN) seem to encounter a bottleneck in improving the accuracy of semantic segmentation. Increasing the inter-class distance between foreground and background is an inherent characteristic of the segmentation network. However, segmentation networks pay too much attention to the main visual difference between foreground and background, and ignores the detailed edge inf…

CE-Net: Context Encoder Network for 2D Medical Image Segmentation

Medical image segmentation is an important step in medical image analysis. With the rapid development of convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc segmentation, blood vessel detection, lung segmentation, cell segmentation, etc. Previously, U-net based approaches have been proposed. However, the consecutive pooling and strided convolutional operations lead to the loss of some spatial information. In this paper, we propose a context encoder network (referred to as CE-Net) to capture more high-level information…

Boundary-Aware Network for Fast and High-Accuracy Portrait Segmentation

Compared with other semantic segmentation tasks, portrait segmentation requires both higher precision and faster inference speed. However, this problem has not been well studied in previous works. In this paper, we propose a lightweight network architecture, called Boundary-Aware Network (BANet) which selectively extracts detail information in boundary area to make high-quality segmentation output with real-time( >25FPS) speed. In addition, we design a new loss function called refine loss which supervises the network with image level gradient information. Our model is able to produce finer seg…

SHDM-NET: Heat Map Detail Guidance with Image Matting for Industrial Weld Semantic Segmentation Network

In actual industrial production, the assessment of the steel plate welding effect is an important task, and the segmentation of the weld section is the basis of the assessment. This paper proposes an industrial weld segmentation network based on a deep learning semantic segmentation algorithm fused with heatmap detail guidance and Image Matting to solve the automatic segmentation problem of weld regions. In the existing semantic segmentation networks, the boundary information can be preserved by fusing the features of both high-level and low-level layers. However, this method can lead to insuf…

Segmentation-by-Detection: A Cascade Network for Volumetric Medical Image Segmentation

We propose an attention mechanism for 3D medical image segmentation. The method, named segmentation-by-detection, is a cascade of a detection module followed by a segmentation module. The detection module enables a region of interest to come to attention and produces a set of object region candidates which are further used as an attention model. Rather than dealing with the entire volume, the segmentation module distills the information from the potential region. This scheme is an efficient solution for volumetric data as it reduces the influence of the surrounding noise which is especially im…

RASNet: Segmentation for Tracking Surgical Instruments in Surgical Videos Using Refined Attention Segmentation Network

Segmentation for tracking surgical instruments plays an important role in robot-assisted surgery. Segmentation of surgical instruments contributes to capturing accurate spatial information for tracking. In this paper, a novel network, Refined Attention Segmentation Network, is proposed to simultaneously segment surgical instruments and identify their categories. The U-shape network which is popular in segmentation is used. Different from previous work, an attention module is adopted to help the network focus on key regions, which can improve the segmentation accuracy. To solve the class imbala…

MDFI-Net：用于精确视网膜血管分割的多尺度差分特征交互网络

MDFI-Net: Multiscale Differential Feature Interaction Network for Accurate Retinal Vessel Segmentation

本文提出MDFI-Net，通过可变形卷积脉冲耦合网络增强特征并实现多尺度交互，在多个公开视网膜血管分割数据集上取得优于现有方法的准确率。

Improved Breast Mass Segmentation in Mammograms with Conditional Residual U-net

We explore the use of deep learning for breast mass segmentation in mammograms. By integrating the merits of residual learning and probabilistic graphical modelling with standard U-Net, we propose a new deep network, Conditional Residual U-Net (CRU-Net), to improve the U-Net segmentation performance. Benefiting from the advantage of probabilistic graphical modelling in the pixel-level labelling, and the structure insights of a deep residual network in the feature extraction, the CRU-Net provides excellent mass segmentation performance. Evaluations based on INbreast and DDSM-BCRP datasets demon…

UCP-Net: Unstructured Contour Points for Instance Segmentation

The goal of interactive segmentation is to assist users in producing segmentation masks as fast and as accurately as possible. Interactions have to be simple and intuitive and the number of interactions required to produce a satisfactory segmentation mask should be as low as possible. In this paper, we propose a novel approach to interactive segmentation based on unconstrained contour clicks for initial segmentation and segmentation refinement. Our method is class-agnostic and produces accurate segmentation masks (IoU > 85%) for a lower number of user interactions than state-of-the-art methods…

Automatic Video Object Segmentation via Motion-Appearance-Stream Fusion and Instance-aware Segmentation

This paper presents a method for automatic video object segmentation based on the fusion of motion stream, appearance stream, and instance-aware segmentation. The proposed scheme consists of a two-stream fusion network and an instance segmentation network. The two-stream fusion network again consists of motion and appearance stream networks, which extract long-term temporal and spatial information, respectively. Unlike the existing two-stream fusion methods, the proposed fusion network blends the two streams at the original resolution for obtaining accurate segmentation boundary. We develop a …

Interactive Video Object Segmentation Using Global and Local Transfer Modules

An interactive video object segmentation algorithm, which takes scribble annotations on query objects as input, is proposed in this paper. We develop a deep neural network, which consists of the annotation network (A-Net) and the transfer network (T-Net). First, given user scribbles on a frame, A-Net yields a segmentation result based on the encoder-decoder architecture. Second, T-Net transfers the segmentation result bidirectionally to the other frames, by employing the global and local transfer modules. The global transfer module conveys the segmentation information in an annotated frame to …

M-FasterSeg: An Efficient Semantic Segmentation Network Based on Neural Architecture Search

Image semantic segmentation technology is one of the key technologies for intelligent systems to understand natural scenes. As one of the important research directions in the field of visual intelligence, this technology has broad application scenarios in the fields of mobile robots, drones, smart driving, and smart security. However, in the actual application of mobile robots, problems such as inaccurate segmentation semantic label prediction and loss of edge information of segmented objects and background may occur. This paper proposes an improved structure of a semantic segmentation network…

Feature-Fused Context-Encoding Network for Neuroanatomy Segmentation

Automatic segmentation of fine-grained brain structures remains a challenging task. Current segmentation methods mainly utilize 2D and 3D deep neural networks. The 2D networks take image slices as input to produce coarse segmentation in less processing time, whereas the 3D networks take the whole image volumes to generated fine-detailed segmentation with more computational burden. In order to obtain accurate fine-grained segmentation efficiently, in this paper, we propose an end-to-end Feature-Fused Context-Encoding Network for brain structure segmentation from MR (magnetic resonance) images. …

Kid-Net: Convolution Networks for Kidney Vessels Segmentation from CT-Volumes

Semantic image segmentation plays an important role in modeling patient-specific anatomy. We propose a convolution neural network, called Kid-Net, along with a training schema to segment kidney vessels: artery, vein and collecting system. Such segmentation is vital during the surgical planning phase in which medical decisions are made before surgical incision. Our main contribution is developing a training schema that handles unbalanced data, reduces false positives and enables high-resolution segmentation with a limited memory budget. These objectives are attained using dynamic weighting, ran…

Automatic Brain Tumor Detection and Segmentation Using U-Net Based Fully Convolutional Networks

A major challenge in brain tumor treatment planning and quantitative evaluation is determination of the tumor extent. The noninvasive magnetic resonance imaging (MRI) technique has emerged as a front-line diagnostic tool for brain tumors without ionizing radiation. Manual segmentation of brain tumor extent from 3D MRI volumes is a very time-consuming task and the performance is highly relied on operator's experience. In this context, a reliable fully automatic segmentation method for the brain tumor segmentation is necessary for an efficient measurement of the tumor extent. In this study, we p…

Mango Tree Net -- A fully convolutional network for semantic segmentation and individual crown detection of mango trees

This work presents a method for semantic segmentation of mango trees in high resolution aerial imagery, and, a novel method for individual crown detection of mango trees using segmentation output. Mango Tree Net, a fully convolutional neural network (FCN), is trained using supervised learning to perform semantic segmentation of mango trees in imagery acquired using an unmanned aerial vehicle (UAV). The proposed network is retrained to separate touching/overlapping tree crowns in segmentation output. Contour based connected object detection is performed on the segmentation output from retrained…

Dynamic Video Segmentation Network

In this paper, we present a detailed design of dynamic video segmentation network (DVSNet) for fast and efficient semantic video segmentation. DVSNet consists of two convolutional neural networks: a segmentation network and a flow network. The former generates highly accurate semantic segmentations, but is deeper and slower. The latter is much faster than the former, but its output requires further processing to generate less accurate semantic segmentations. We explore the use of a decision network to adaptively assign different frame regions to different networks based on a metric called expe…

Quality-Aware Memory Network for Interactive Volumetric Image Segmentation

Despite recent progress of automatic medical image segmentation techniques, fully automatic results usually fail to meet the clinical use and typically require further refinement. In this work, we propose a quality-aware memory network for interactive segmentation of 3D medical images. Provided by user guidance on an arbitrary slice, an interaction network is firstly employed to obtain an initial 2D segmentation. The quality-aware memory network subsequently propagates the initial segmentation estimation bidirectionally over the entire volume. Subsequent refinement based on additional user gui…

SPG-Net: Segmentation Prediction and Guidance Network for Image Inpainting

In this paper, we focus on image inpainting task, aiming at recovering the missing area of an incomplete image given the context information. Recent development in deep generative models enables an efficient end-to-end framework for image synthesis and inpainting tasks, but existing methods based on generative models don't exploit the segmentation information to constrain the object shapes, which usually lead to blurry results on the boundary. To tackle this problem, we propose to introduce the semantic segmentation information, which disentangles the inter-class difference and intra-class var…

Deep attention-guided fusion network for lesion segmentation

We participated the Task 1: Lesion Segmentation. The paper describes our algorithm and the final result of validation set for the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection.

Bridging the Gap Between 2D and 3D Organ Segmentation with Volumetric Fusion Net

There has been a debate on whether to use 2D or 3D deep neural networks for volumetric organ segmentation. Both 2D and 3D models have their advantages and disadvantages. In this paper, we present an alternative framework, which trains 2D networks on different viewpoints for segmentation, and builds a 3D Volumetric Fusion Net (VFN) to fuse the 2D segmentation results. VFN is relatively shallow and contains much fewer parameters than most 3D networks, making our framework more efficient at integrating 3D information for segmentation. We train and test the segmentation and fusion modules individu…

L-SNet: from Region Localization to Scale Invariant Medical Image Segmentation

Coarse-to-fine models and cascade segmentation architectures are widely adopted to solve the problem of large scale variations in medical image segmentation. However, those methods have two primary limitations: the first-stage segmentation becomes a performance bottleneck; the lack of overall differentiability makes the training process of two stages asynchronous and inconsistent. In this paper, we propose a differentiable two-stage network architecture to tackle these problems. In the first stage, a localization network (L-Net) locates Regions of Interest (RoIs) in a detection fashion; in the…

Interactive segmentation using U-Net with weight map and dynamic user interactions

Interactive segmentation has recently attracted attention for specialized tasks where expert input is required to further enhance the segmentation performance. In this work, we propose a novel interactive segmentation framework, where user clicks are dynamically adapted in size based on the current segmentation mask. The clicked regions form a weight map and are fed to a deep neural network as a novel weighted loss function. To evaluate our loss function, an interactive U-Net (IU-Net) model which applies both foreground and background user clicks as the main method of interaction is employed. …

Skin lesion segmentation using U-Net and good training strategies

In this paper we approach the problem of skin lesion segmentation using a convolutional neural network based on the U-Net architecture. We present a set of training strategies that had a significant impact on the performance of this model. We evaluated this method on the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection, obtaining threshold Jaccard index of 77.5%.

SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth

A key limitation of deep convolutional neural networks (DCNN) based image segmentation methods is the lack of generalizability. Manually traced training images are typically required when segmenting organs in a new imaging modality or from distinct disease cohort. The manual efforts can be alleviated if the manually traced images in one imaging modality (e.g., MRI) are able to train a segmentation network for another imaging modality (e.g., CT). In this paper, we propose an end-to-end synthetic segmentation network (SynSeg-Net) to train a segmentation network for a target imaging modality with…

Psi-Net: Shape and boundary aware joint multi-task deep network for medical image segmentation

Image segmentation is a primary task in many medical applications. Recently, many deep networks derived from U-Net have been extensively used in various medical image segmentation tasks. However, in most of the cases, networks similar to U-net produce coarse and non-smooth segmentations with lots of discontinuities. To improve and refine the performance of U-Net like networks, we propose the use of parallel decoders which along with performing the mask predictions also perform contour prediction and distance map estimation. The contour and distance map aid in ensuring smoothness in the segment…

Ω-Net (Omega-Net): Fully Automatic, Multi-View Cardiac MR Detection, Orientation, and Segmentation with Deep Neural Networks

Pixelwise segmentation of the left ventricular (LV) myocardium and the four cardiac chambers in 2-D steady state free precession (SSFP) cine sequences is an essential preprocessing step for a wide range of analyses. Variability in contrast, appearance, orientation, and placement of the heart between patients, clinical views, scanners, and protocols makes fully automatic semantic segmentation a notoriously difficult problem. Here, we present $Ω$-Net (Omega-Net): a novel convolutional neural network (CNN) architecture for simultaneous localization, transformation into a canonical orientation, an…

Trilateral Attention Network for Real-time Medical Image Segmentation

Accurate segmentation of medical images into anatomically meaningful regions is critical for the extraction of quantitative indices or biomarkers. The common pipeline for segmentation comprises regions of interest detection stage and segmentation stage, which are independent of each other and typically performed using separate deep learning networks. The performance of the segmentation stage highly relies on the extracted set of spatial features and the receptive fields. In this work, we propose an end-to-end network, called Trilateral Attention Network (TaNet), for real-time detection and seg…

HGR-Net: A Fusion Network for Hand Gesture Segmentation and Recognition

We propose a two-stage convolutional neural network (CNN) architecture for robust recognition of hand gestures, called HGR-Net, where the first stage performs accurate semantic segmentation to determine hand regions, and the second stage identifies the gesture. The segmentation stage architecture is based on the combination of fully convolutional residual network and atrous spatial pyramid pooling. Although the segmentation sub-network is trained without depth information, it is particularly robust against challenges such as illumination variations and complex backgrounds. The recognition stag…

Multi-Resolution Networks for Semantic Segmentation in Whole Slide Images

Digital pathology provides an excellent opportunity for applying fully convolutional networks (FCNs) to tasks, such as semantic segmentation of whole slide images (WSIs). However, standard FCNs face challenges with respect to multi-resolution, inherited from the pyramid arrangement of WSIs. As a result, networks specifically designed to learn and aggregate information at different levels are desired. In this paper, we propose two novel multi-resolution networks based on the popular `U-Net' architecture, which are evaluated on a benchmark dataset for binary semantic segmentation in WSIs. The pr…

Comparison of U-net-based Convolutional Neural Networks for Liver Segmentation in CT

Various approaches for liver segmentation in CT have been proposed: Besides statistical shape models, which played a major role in this research area, novel approaches on the basis of convolutional neural networks have been introduced recently. Using a set of 219 liver CT datasets with reference segmentations from liver surgery planning, we evaluate the performance of several neural network classifiers based on 2D and 3D U-net architectures. An interesting observation is that slice-wise approaches perform surprisingly well, with mean and median Dice coefficients above 0.97, and may be preferab…

Mask-RCNN and U-net Ensembled for Nuclei Segmentation

Nuclei segmentation is both an important and in some ways ideal task for modern computer vision methods, e.g. convolutional neural networks. While recent developments in theory and open-source software have made these tools easier to implement, expert knowledge is still required to choose the right model architecture and training setup. We compare two popular segmentation frameworks, U-Net and Mask-RCNN in the nuclei segmentation task and find that they have different strengths and failures. To get the best of both worlds, we develop an ensemble model to combine their predictions that can outp…

CC-Net: Image Complexity Guided Network Compression for Biomedical Image Segmentation

Convolutional neural networks (CNNs) for biomedical image analysis are often of very large size, resulting in high memory requirement and high latency of operations. Searching for an acceptable compressed representation of the base CNN for a specific imaging application typically involves a series of time-consuming training/validation experiments to achieve a good compromise between network size and accuracy. To address this challenge, we propose CC-Net, a new image complexity-guided CNN compression scheme for biomedical image segmentation. Given a CNN model, CC-Net predicts the final accuracy…

从卷积到Transformer：用于脑肿瘤和视网膜血管分割的U-Net变体比较研究

From Convolution to Transformer: A Comparative Study of U-Net Variants for Brain Tumor and Retinal Vessel Segmentation

比较五种U-Net变体（U-Net 3D、Residual U-Net、Attention U-Net、UNETR、Swin UNETR）在脑肿瘤和视网膜血管分割任务上的性能，发现基于Transformer的Swin UNETR在全局上下文建模中表现最佳。

EPSNet: Efficient Panoptic Segmentation Network with Cross-layer Attention Fusion

Panoptic segmentation is a scene parsing task which unifies semantic segmentation and instance segmentation into one single task. However, the current state-of-the-art studies did not take too much concern on inference time. In this work, we propose an Efficient Panoptic Segmentation Network (EPSNet) to tackle the panoptic segmentation tasks with fast inference speed. Basically, EPSNet generates masks based on simple linear combination of prototype masks and mask coefficients. The light-weight network branches for instance segmentation and semantic segmentation only need to predict mask coeffi…

DoubleU-Net: A Deep Convolutional Neural Network for Medical Image Segmentation

Semantic image segmentation is the process of labeling each pixel of an image with its corresponding class. An encoder-decoder based approach, like U-Net and its variants, is a popular strategy for solving medical image segmentation tasks. To improve the performance of U-Net on various segmentation tasks, we propose a novel architecture called DoubleU-Net, which is a combination of two U-Net architectures stacked on top of each other. The first U-Net uses a pre-trained VGG-19 as the encoder, which has already learned features from ImageNet and can be transferred to another task easily. To capt…

MGFI-Net：用于增强医学图像分割的多粒度特征集成网络

MGFI-Net: A Multi-Grained Feature Integration Network for Enhanced Medical Image Segmentation

针对医学图像分割中噪声、低对比度等问题导致的精度不足及边缘细节丢失，提出MGFI-Net，通过多粒度特征提取模块和边缘增强模块提升分割精度与时间效率，优于现有方法。

TMS-Net: A Segmentation Network Coupled With A Run-time Quality Control Method For Robust Cardiac Image Segmentation

Recently, deep networks have shown impressive performance for the segmentation of cardiac Magnetic Resonance Imaging (MRI) images. However, their achievement is proving slow to transition to widespread use in medical clinics because of robustness issues leading to low trust of clinicians to their results. Predicting run-time quality of segmentation masks can be useful to warn clinicians against poor results. Despite its importance, there are few studies on this problem. To address this gap, we propose a quality control method based on the agreement across decoders of a multi-view network, TMS-…

利用Mini-Net推进医学图像分割：专为医学图像高效分割定制的轻量级解决方案

Advancing Medical Image Segmentation with Mini-Net: A Lightweight Solution Tailored for Efficient Segmentation of Medical Images

提出专为医学图像设计的轻量级网络Mini-Net，参数量不足38,000，能高效提取特征并支持实时应用，在多个医学数据集上表现出鲁棒性与优越性能。

Label Refinement Network from Synthetic Error Augmentation for Medical Image Segmentation

Deep convolutional neural networks for image segmentation do not learn the label structure explicitly and may produce segmentations with an incorrect structure, e.g., with disconnected cylindrical structures in the segmentation of tree-like structures such as airways or blood vessels. In this paper, we propose a novel label refinement method to correct such errors from an initial segmentation, implicitly incorporating information about label structure. This method features two novel parts: 1) a model that generates synthetic structural errors, and 2) a label appearance simulation network that …

Cascaded Convolutional Neural Network for Automatic Myocardial Infarction Segmentation from Delayed-Enhancement Cardiac MRI

Automatic segmentation of myocardial contours and relevant areas like infraction and no-reflow is an important step for the quantitative evaluation of myocardial infarction. In this work, we propose a cascaded convolutional neural network for automatic myocardial infarction segmentation from delayed-enhancement cardiac MRI. We first use a 2D U-Net to focus on the intra-slice information to perform a preliminary segmentation. After that, we use a 3D U-Net to utilize the volumetric spatial information for a subtle segmentation. Our method is evaluated on the MICCAI 2020 EMIDEC challenge dataset …

SRCNet：用于海面溢油分割的核心表征协同网络

SRCNet: Seminal Representation Collaborative Network for Marine Oil Spill Segmentation

该研究提出用于SAR图像海面溢油分割的SRCNet，通过核心表征协同生成与判别网络，结合正则化项，实现小样本下高效精准的溢油分割，经多指标实验验证了有效性。

MAMBO-NET：用于医学图像分割网络的多重因果感知建模后门干预优化

MAMBO-NET: Multi-Causal Aware Modeling Backdoor-Intervention Optimization for Medical Image Segmentation Network

针对医学图像分割中混淆因素影响精度的问题，提出MAMBO-NET网络，利用多重高斯分布拟合混淆因素并引入后门干预技术，有效提升了分割准确性。

SECP-Net: SE-Connection Pyramid Network of Organ At Risk Segmentation for Nasopharyngeal Carcinoma

Nasopharyngeal carcinoma (NPC) is a kind of malignant tumor. Accurate and automatic segmentation of organs at risk (OAR) of computed tomography (CT) images is clinically significant. In recent years, deep learning models represented by U-Net have been widely applied in medical image segmentation tasks, which can help doctors with reduction of workload and get accurate results more quickly. In OAR segmentation of NPC, the sizes of OAR are variable, especially, some of them are small. Traditional deep neural networks underperform during segmentation due to the lack use of global and multi-size i…

H2NF-Net for Brain Tumor Segmentation using Multimodal MR Imaging: 2nd Place Solution to BraTS Challenge 2020 Segmentation Task

In this paper, we propose a Hybrid High-resolution and Non-local Feature Network (H2NF-Net) to segment brain tumor in multimodal MR images. Our H2NF-Net uses the single and cascaded HNF-Nets to segment different brain tumor sub-regions and combines the predictions together as the final segmentation. We trained and evaluated our model on the Multimodal Brain Tumor Segmentation Challenge (BraTS) 2020 dataset. The results on the test set show that the combination of the single and cascaded models achieved average Dice scores of 0.78751, 0.91290, and 0.85461, as well as Hausdorff distances ($95\%$…

MDA-Net: Multi-Dimensional Attention-Based Neural Network for 3D Image Segmentation

Segmenting an entire 3D image often has high computational complexity and requires large memory consumption; by contrast, performing volumetric segmentation in a slice-by-slice manner is efficient but does not fully leverage the 3D data. To address this challenge, we propose a multi-dimensional attention network (MDA-Net) to efficiently integrate slice-wise, spatial, and channel-wise attention into a U-Net based network, which results in high segmentation accuracy with a low computational cost. We evaluate our model on the MICCAI iSeg and IBSR datasets, and the experimental results demonstrate…

用于二维MRI分割的贝叶斯神经网络

Bayesian Neural Networks for 2D MRI Segmentation

针对医学图像分割这类安全关键场景的不确定性量化需求，提出融合贝叶斯神经网络与注意力机制的MRI分割模型BA U-Net，经BraTS 2020验证可输出准确可解释结果，满足医学成像置信度估计需求。

SVS-net: A Novel Semantic Segmentation Network in Optical Coherence Tomography Angiography Images

Automated vascular segmentation on optical coherence tomography angiography (OCTA) is important for the quantitative analyses of retinal microvasculature in neuroretinal and systemic diseases. Despite recent improvements, artifacts continue to pose challenges in segmentation. Our study focused on removing the speckle noise artifact from OCTA images when performing segmentation. Speckle noise is common in OCTA and is particularly prominent over large non-perfusion areas. It may interfere with the proper assessment of retinal vasculature. In this study, we proposed a novel Supervision Vessel Seg…

Medical Image Segmentation Using a U-Net type of Architecture

Deep convolutional neural networks have been proven to be very effective in image related analysis and tasks, such as image segmentation, image classification, image generation, etc. Recently many sophisticated CNN based architectures have been proposed for the purpose of image segmentation. Some of these newly designed networks are used for the specific purpose of medical image segmentation, models like V-Net, U-Net and their variants. It has been shown that U-Net produces very promising results in the domain of medical image segmentation.However, in this paper, we argue that the architecture…