Semi-Automatic Data Annotation guided by Feature Space Projection
Institute of Computing, University of Campinas（坎皮纳斯大学计算研究所）；Department of Information and Computing Sciences, Faculty of Science, Utrecht University（乌得勒支大学理学院信息与计算科学系）
Barbara Caroline Benato, Jancarlo Ferreira Gomes, Alexandru Cristian Telea, Alexandre Xavier Falcão
Data annotation using visual inspection (supervision) of each training sample can be laborious. Interactive solutions alleviate this by helping experts propagate labels from a few supervised samples to unlabeled ones based solely on the visual analysis of their feature space projection (with no further sample supervision). We present a semi-automatic data annotation approach based on suitable feature space projection and semi-supervised label estimation. We validate our method on the popular MNIST dataset and on images of human intestinal parasites with and without fecal impurities, a large and diverse dataset that makes classification very hard. We evaluate two approaches for semi-supervised learning from the latent and projection spaces, to choose the one that best reduces user annotation effort and also increases classification accuracy on unseen data. Our results demonstrate the added-value of visual analytics tools that combine complementary abilities of humans and machines for more effective machine learning.
The increase in data collection has made data annotation an interesting and valuable task in the contemporary world. This paper presents a new methodology for quickly annotating data using click-supervision and hierarchical object detection. The proposed work is semi-automatic in nature where the task of annotations is split between the human and a neural network. We show that our improved method of annotation reduces the time, cost and mental stress on a human annotator. The research also highlights how our method performs better than the current approach in different circumstances such as va…
Learning-based methods for visual segmentation have made progress on particular types of segmentation tasks, but are limited by the necessary supervision, the narrow definitions of fixed tasks, and the lack of control during inference for correcting errors. To remedy the rigidity and annotation burden of standard approaches, we address the problem of few-shot segmentation: given few image and few pixel supervision, segment any images accordingly. We propose guided networks, which extract a latent task representation from any amount of supervision, and optimize our architecture end-to-end for f…
DiZiNER: Disagreement-guided Instruction Refinement via Pilot Annotation Simulation for Zero-shot Named Entity Recognition
Seltasquare Seoul, Korea（首尔韩国Seltasquare）；Seoul National University College of Medicine（首尔国立大学医学院）；Biomedical Research Institute, Seoul National University Hospital（首尔国立大学医院生物医学研究所）
Training high-accuracy object detection models requires large and diverse annotated datasets. However, creating these data-sets is time-consuming and expensive since it relies on human annotators. We design, implement, and evaluate TagMe, a new approach for automatic object annotation in videos that uses GPS data. When the GPS trace of an object is available, TagMe matches the object's motion from GPS trace and the pixels' motions in the video to find the pixels belonging to the object in the video and creates the bounding box annotations of the object. TagMe works using passive data collectio…
PAII Inc.（PAII公司）；The University of Texas at Arlington（德克萨斯大学阿灵顿分校）；University at Buffalo（纽约州立大学布法罗分校）；Chang Gung Memorial Hospital（长庚纪念医院）；PingAn Technology（平安科技）
Mask-based annotation of medical images, especially for 3D data, is a bottleneck in developing reliable machine learning models. Using minimal-labor user interactions (UIs) to guide the annotation is promising, but challenges remain on best harmonizing the mask prediction with the UIs. To address this, we propose the user-guided domain adaptation (UGDA) framework, which uses prediction-based adversarial domain adaptation (PADA) to model the combined distribution of UIs and mask predictions. The UIs are then used as anchors to guide and align the mask prediction. Importantly, UGDA can both lear…
Imperial College London（帝国理工学院）；University of Oxford（牛津大学）
Machine learning has been widely adopted for medical image analysis in recent years given its promising performance in image segmentation and classification tasks. As a data-driven science, the success of machine learning, in particular supervised learning, largely depends on the availability of manually annotated datasets. For medical imaging applications, such annotated datasets are not easy to acquire. It takes a substantial amount of time and resource to curate an annotated medical image set. In this paper, we propose an efficient annotation framework for brain tumour images that is able t…
Assessing dietary intake accurately remains an open and challenging research problem. In recent years, image-based approaches have been developed to automatically estimate food intake by capturing eat occasions with mobile devices and wearable cameras. To build a reliable machine-learning models that can automatically map pixels to calories, successful image-based systems need large collections of food images with high quality groundtruth labels to improve the learned models. In this paper, we introduce a semi-automatic system for online food image collection and annotation. Our system consist…
The extraction of labels from radiology text reports enables large-scale training of medical imaging models. Existing approaches to report labeling typically rely either on sophisticated feature engineering based on medical domain knowledge or manual annotations by experts. In this work, we introduce a BERT-based approach to medical image report labeling that exploits both the scale of available rule-based systems and the quality of expert annotations. We demonstrate superior performance of a biomedically pretrained BERT model first trained on annotations of a rule-based labeler and then finet…
High-resolution fingerprint recognition often relies on sophisticated matching algorithms based on hand-crafted keypoint descriptors, with pores being the most common keypoint choice. Our method is the opposite of the prevalent approach: we use instead a simple matching algorithm based on robust local pore descriptors that are learned from the data using a CNN. In order to train this CNN in a fully supervised manner, we describe how the automatic alignment of fingerprint images can be used to obtain the required training annotations, which are otherwise missing in all publicly available datase…
The University of Adelaide（阿德莱德大学）；Monash University（莫纳什大学）
Human activity recognition (HAR) is an important research field in ubiquitous computing where the acquisition of large-scale labeled sensor data is tedious, labor-intensive and time consuming. State-of-the-art unsupervised remedies investigated to alleviate the burdens of data annotations in HAR mainly explore training autoencoder frameworks. In this paper: we explore generative adversarial network (GAN) paradigms to learn unsupervised feature representations from wearable sensor data; and design a new GAN framework-Geometrically-Guided GAN or Guided-GAN-for the task. To demonstrate the effect…
Jožef Stefan Institute（约泽夫·斯蒂芬研究所）；Center za jezikovne vire in tehnologije（语言资源与技术中心）；Univerze v Ljubljani（卢布尔雅那大学）
ChatGPT has shown strong capabilities in natural language generation tasks, which naturally leads researchers to explore where its abilities end. In this paper, we examine whether ChatGPT can be used for zero-shot text classification, more specifically, automatic genre identification. We compare ChatGPT with a multilingual XLM-RoBERTa language model that was fine-tuned on datasets, manually annotated with genres. The models are compared on test sets in two languages: English and Slovenian. Results show that ChatGPT outperforms the fine-tuned model when applied to the dataset which was not seen…
Automatic brain tumor segmentation in 2D intra-operative ultrasound images using magnetic resonance imaging tumor annotations
Department of Health Research（健康研究系）；SINTEF Digital（SINTEF数字）；Department of Physics（物理系）；Norwegian University of Science and Technology (NTNU)（挪威科学与技术大学（NTNU））；Department of Circulation and Medical Imaging（循环与医学成像系）；St. Olavs hospital（圣奥拉夫医院）；Department of Neuromedicine and Movement Science（神经医学与运动科学系）
Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院保罗·C·劳特伯生物医学成像研究中心）；Peng Cheng Laboratory（鹏城实验室）；Pazhou Laboratory（琶洲实验室）；Guangdong General Hospital, Guangdong Academy of Medical Sciences（广东省人民医院（广东省医学科学院））；Renmin Hospital of Wuhan University（武汉大学人民医院）；School of Electronic and Computer Engineering, Shenzhen Graduate School, Peking University（北京大学深圳研究生院电子与计算机工程学院）；Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院脑认知与脑疾病研究所）；ETS Montreal（蒙特利尔高等技术学院）
Automatic medical image segmentation plays a critical role in scientific research and medical care. Existing high-performance deep learning methods typically rely on large training datasets with high-quality manual annotations, which are difficult to obtain in many clinical applications. Here, we introduce Annotation-effIcient Deep lEarning (AIDE), an open-source framework to handle imperfect training datasets. Methodological analyses and empirical evaluations are conducted, and we demonstrate that AIDE surpasses conventional fully-supervised models by presenting better performance on open dat…
Gliomas are the most common malignant brain tumourswith intrinsic heterogeneity. Accurate segmentation of gliomas and theirsub-regions on multi-parametric magnetic resonance images (mpMRI)is of great clinical importance, which defines tumour size, shape andappearance and provides abundant information for preoperative diag-nosis, treatment planning and survival prediction. Recent developmentson deep learning have significantly improved the performance of auto-mated medical image segmentation. In this paper, we compare severalstate-of-the-art convolutional neural network models for brain tumouri…
Tsinghua University（清华大学）；Beijing National Research Center for Information Science and Technology（北京国家信息科学与技术研究中心）
In this paper, we propose a weakly-supervised approach for 3D object detection, which makes it possible to train a strong 3D detector with position-level annotations (i.e. annotations of object centers). In order to remedy the information loss from box annotations to centers, our method, namely Back to Reality (BR), makes use of synthetic 3D shapes to convert the weak labels into fully-annotated virtual scenes as stronger supervision, and in turn utilizes the perfect virtual labels to complement and refine the real labels. Specifically, we first assemble 3D shapes into physically reasonable vi…
TU Delft（代尔夫特理工大学）；Instituto Tecnologico de Costa Rica（哥斯达黎加技术学院）
Laughter is considered one of the most overt signals of joy. Laughter is well-recognized as a multimodal phenomenon but is most commonly detected by sensing the sound of laughter. It is unclear how perception and annotation of laughter differ when annotated from other modalities like video, via the body movements of laughter. In this paper we take a first step in this direction by asking if and how well laughter can be annotated when only audio, only video (containing full body movement information) or audiovisual modalities are available to annotators. We ask whether annotations of laughter a…
