This work is devoted to the finite sample prediction risk analysis of a class of linear predictors of a response $Y\in \mathbb{R}$ from a high-dimensional random vector $X\in \mathbb{R}^p$ when $(X,Y)$ follows a latent factor regression model generated by a unobservable latent vector $Z$ of dimension less than $p$. Our primary contribution is in establishing finite sample risk bounds for prediction with the ubiquitous Principal Component Regression (PCR) method, under the factor regression model, with the number of principal components adaptively selected from the data -- a form of theoretical guarantee that is surprisingly lacking from the PCR literature. To accomplish this, we prove a master theorem that establishes a risk bound for a large class of predictors, including the PCR predictor as a special case. This approach has the benefit of providing a unified framework for the analysis of a wide range of linear prediction methods, under the factor regression setting. In particular, we use our main theorem to recover known risk bounds for the minimum-norm interpolating predictor, which has received renewed attention in the past two years, and a prediction method tailored to a subclass of factor regression models with identifiable parameters. This model-tailored method can be interpreted as prediction via clusters with latent centers.
To address the problem of selecting among a set of candidate predictors, we analyze a simple model selection procedure based on data-splitting, providing an oracle inequality under the factor model to prove that the performance of the selected predictor is close to the optimal candidate. We conclude with a detailed simulation study to support and complement our theoretical results.
In this paper we study the statistical properties of Principal Components Regression with Laplacian Eigenmaps (PCR-LE), a method for nonparametric regression based on Laplacian Eigenmaps (LE). PCR-LE works by projecting a vector of observed responses ${\bf Y} = (Y_1,\ldots,Y_n)$ onto a subspace spanned by certain eigenvectors of a neighborhood graph Laplacian. We show that PCR-LE achieves minimax rates of convergence for random design regression over Sobolev spaces. Under sufficient smoothness conditions on the design density $p$, PCR-LE achieves the optimal rates for both estimation (where th…
Principal Components Regression (PCR) is a traditional tool for dimension reduction in linear regression that has been both criticized and defended. One concern about PCR is that obtaining the leading principal components tends to be computationally demanding for large data sets. While random projections do not possess the optimality properties of the leading principal subspace, they are computationally appealing and hence have become increasingly popular in recent years. In this paper, we present an analysis showing that for random projections satisfying a Johnson-Lindenstrauss embedding prop…
Principal component regression (PCR) is a simple, but powerful and ubiquitously utilized method. Its effectiveness is well established when the covariates exhibit low-rank structure. However, its ability to handle settings with noisy, missing, and mixed-valued, i.e., discrete and continuous, covariates is not understood and remains an important open challenge. As the main contribution of this work we establish the robustness of PCR, without any change, in this respect and provide meaningful finite-sample analysis. To do so, we establish that PCR is equivalent to performing linear regression af…
Sparse linear prediction methods suffer from decreased prediction accuracy when the predictor variables have cluster structure (e.g. there are highly correlated groups of variables). To improve prediction accuracy, various methods have been proposed to identify variable clusters from the data and integrate cluster information into a sparse modeling process. But none of these methods achieve satisfactory performance for prediction, variable selection and variable clustering simultaneously. This paper presents Variable Cluster Principal Component Regression (VC-PCR), a prediction method that sup…
Principal component regression (PCR) is a two-stage procedure that selects some principal components and then constructs a regression model regarding them as new explanatory variables. Note that the principal components are obtained from only explanatory variables and not considered with the response variable. To address this problem, we propose the sparse principal component regression (SPCR) that is a one-stage procedure for PCR. SPCR enables us to adaptively obtain sparse principal component loadings that are related to the response variable and select the number of principal components sim…
Identifying Neural Signatures from fMRI using Hybrid Principal Components Regression
Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus（生物统计学与信息学系，科罗拉多大学安施图茨医疗校区）；Department of Biostatistics and Bioinformatics, Emory University（生物统计学与生物信息学系，埃默里大学）；Department of Radiology, University of Colorado Anschutz Medical Campus（放射学系，科罗拉多大学安施图茨医疗校区）；Laureate Institute for Brain Research, Tulsa, OK, USA（脑研究拉奥尔特研究所，俄克拉荷马州塔尔萨市）；Department of Community Medicine, University of Tulsa（社区医学系，塔尔萨大学）；Department of Internal Medicine, Carver College of Medicine, University of Iowa（内科学系，卡弗医学院，爱荷华大学）
We propose the Factor Augmented sparse linear Regression Model (FARM) that not only encompasses both the latent factor regression and sparse linear regression as special cases but also bridges dimension reduction and sparse regression together. We provide theoretical guarantees for the estimation of our model under the existence of sub-Gaussian and heavy-tailed noises (with bounded (1+x)-th moment, for all x>0), respectively. In addition, the existing works on supervised learning often assume the latent factor regression or the sparse linear regression is the true underlying model without just…
Institut National de Recherche sur les Transports et leur Sécurité（法国国家交通、运输与安全研究所）；Université de Technologie de Compiègne（贡比涅技术大学）
A non linear regression approach which consists of a specific regression model incorporating a latent process, allowing various polynomial regression models to be activated preferentially and smoothly, is introduced in this paper. The model parameters are estimated by maximum likelihood performed via a dedicated expecation-maximization (EM) algorithm. An experimental study using simulated and real data sets reveals good performances of the proposed approach.
University of Bristol（布里斯托大学）；University of Bath（巴斯大学）
We introduce Latent Gaussian Process Regression which is a latent variable extension allowing modelling of non-stationary multi-modal processes using GPs. The approach is built on extending the input space of a regression problem with a latent variable that is used to modulate the covariance function over the training data. We show how our approach can be used to model multi-modal and non-stationary processes. We exemplify the approach on a set of synthetic data and provide results on real data from motion capture and geostatistics.
In this work we address the problem of approximating high-dimensional data with a low-dimensional representation. We make the following contributions. We propose an inverse regression method which exchanges the roles of input and response, such that the low-dimensional variable becomes the regressor, and which is tractable. We introduce a mixture of locally-linear probabilistic mapping model that starts with estimating the parameters of inverse regression, and follows with inferring closed-form solutions for the forward parameters of the high-dimensional regression problem of interest. Moreove…
Compiègne University of Technology（贡比涅技术大学）；French National Institute for Transport and Safety Research (INRETS)（法国国家运输与安全研究所（INRETS））
Time series are used in many domains including finance, engineering, economics and bioinformatics generally to represent the change of a measurement over time. Modeling techniques may then be used to give a synthetic representation of such data. A new approach for time series modeling is proposed in this paper. It consists of a regression model incorporating a discrete hidden logistic process allowing for activating smoothly or abruptly different polynomial regression models. The model parameters are estimated by the maximum likelihood method performed by a dedicated Expectation Maximization (…
Georgia Institute of Technology（佐治亚理工学院）；Carnegie Mellon University（卡内基梅隆大学）；Air Force Research Laboratory（美国空军研究实验室）
We propose a combined model, which integrates the latent factor model and the logistic regression model, for the citation network. It is noticed that neither a latent factor model nor a logistic regression model alone is sufficient to capture the structure of the data. The proposed model has a latent (i.e., factor analysis) model to represents the main technological trends (a.k.a., factors), and adds a sparse component that captures the remaining ad-hoc dependence. Parameter estimation is carried out through the construction of a joint-likelihood function of edges and properly chosen penalty t…
Gaussian processes (GPs) are a powerful tool for probabilistic inference over functions. They have been applied to both regression and non-linear dimensionality reduction, and offer desirable properties such as uncertainty estimates, robustness to over-fitting, and principled ways for tuning hyper-parameters. However the scalability of these models to big datasets remains an active topic of research. We introduce a novel re-parametrisation of variational inference for sparse GP regression and latent variable models that allows for an efficient distributed algorithm. This is done by exploiting …
ETH Zurich（苏黎世联邦理工学院）；Technical University of Darmstadt（达姆施塔特工业大学）；Massachusetts Institute of Technology（麻省理工学院）
The ever-increasing quantity of multivariate process data is driving a need for skilled engineers to analyze, interpret, and build models from such data. Multivariate data analytics relies heavily on linear algebra, optimization, and statistics and can be challenging for students to understand given that most curricula do not have strong coverage in the latter three topics. This article describes interactive software - the Latent Variable Demonstrator (LAVADE) - for teaching, learning, and understanding latent variable methods. In this software, users can interactively compare latent variable …
Tufts University（塔夫茨大学）；Dept. of Electrical and Computer Engineering（电气与计算机工程系）
Multi-task/Multi-output learning seeks to exploit correlation among tasks to enhance performance over learning or solving each task independently. In this paper, we investigate this problem in the context of Gaussian Processes (GPs) and propose a new model which learns a mixture of latent processes by decomposing the covariance matrix into a sum of structured hidden components each of which is controlled by a latent GP over input features and a "weight" over tasks. From this sum structure, we propose a parallelizable parameter learning algorithm with a predetermined initialization for the "wei…
INRETS（法国国家交通与安全研究所）；Université Paris 12（巴黎第十二大学）；Université de Franche-Comté（弗朗什-孔泰大学）；FCLAB（燃料电池实验室）
This paper describes a pattern recognition approach aiming to estimate fuel cell duration time from electrochemical impedance spectroscopy measurements. It consists in first extracting features from both real and imaginary parts of the impedance spectrum. A parametric model is considered in the case of the real part, whereas regression model with latent variables is used in the latter case. Then, a linear regression model using different subsets of extracted features is used fo r the estimation of fuel cell time duration. The performances of the proposed approach are evaluated on experimental …
Peking University（北京大学）；University of Virginia（弗吉尼亚大学）
Latent factor models have achieved great success in personalized recommendations, but they are also notoriously difficult to explain. In this work, we integrate regression trees to guide the learning of latent factor models for recommendation, and use the learnt tree structure to explain the resulting latent factors. Specifically, we build regression trees on users and items respectively with user-generated reviews, and associate a latent profile to each node on the trees to represent users and items. With the growth of regression tree, the latent factors are gradually refined under the regula…
Carl von Ossietzky Universität Oldenburg（卡尔·冯·奥西茨基奥尔登堡大学）
In many scientific disciplines structures in high-dimensional data have to be found, e.g., in stellar spectra, in genome data, or in face recognition tasks. In this work we present a novel approach to non-linear dimensionality reduction. It is based on fitting K-nearest neighbor regression to the unsupervised regression framework for learning of low-dimensional manifolds. Similar to related approaches that are mostly based on kernel methods, unsupervised K-nearest neighbor (UNN) regression optimizes latent variables w.r.t. the data space reconstruction error employing the K-nearest neighbor he…
In this paper, we propose a non-parametric conditional factor regression (NCFR)model for domains with high-dimensional input and response. NCFR enhances linear regression in two ways: a) introducing low-dimensional latent factors leading to dimensionality reduction and b) integrating an Indian Buffet Process as a prior for the latent factors to derive unlimited sparse dimensions. Experimental results comparing NCRF to several alternatives give evidence to remarkable prediction performance.
In high-dimensional data, structured noise caused by observed and unobserved factors affecting multiple target variables simultaneously, imposes a serious challenge for modeling, by masking the often weak signal. Therefore, (1) explaining away the structured noise in multiple-output regression is of paramount importance. Additionally, (2) assumptions about the correlation structure of the regression weights are needed. We note that both can be formulated in a natural way in a latent variable model, in which both the interesting signal and the noise are mediated through the same latent factors.…
Discriminative latent-variable models are typically learned using EM or gradient-based optimization, which suffer from local optima. In this paper, we develop a new computationally efficient and provably consistent estimator for a mixture of linear regressions, a simple instance of a discriminative latent-variable model. Our approach relies on a low-rank linear regression to recover a symmetric tensor, which can be factorized into the parameters using a tensor power method. We prove rates of convergence for our estimator and provide an empirical evaluation illustrating its strengths relative t…
While unsupervised variational autoencoders (VAE) have become a powerful tool in neuroimage analysis, their application to supervised learning is under-explored. We aim to close this gap by proposing a unified probabilistic model for learning the latent space of imaging data and performing supervised regression. Based on recent advances in learning disentangled representations, the novel generative process explicitly models the conditional distribution of latent representations with respect to the regression target variable. Performing a variational inference procedure on this model leads to j…
Tokyo Institute of Technology（东京工业大学）；The Toyota Technological Institute at Chicago（芝加哥丰田技术研究所）；University of Tokyo（东京大学）
We theoretically and experimentally investigate tensor-based regression and classification. Our focus is regularization with various tensor norms, including the overlapped trace norm, the latent trace norm, and the scaled latent trace norm. We first give dual optimization methods using the alternating direction method of multipliers, which is computationally efficient when the number of training samples is moderate. We then theoretically derive an excess risk bound for each tensor norm and clarify their behavior. Finally, we perform extensive experiments using simulated and real data and demon…
Standard GPs offer a flexible modelling tool for well-behaved processes. However, deviations from Gaussianity are expected to appear in real world datasets, with structural outliers and shocks routinely observed. In these cases GPs can fail to model uncertainty adequately and may over-smooth inferences. Here we extend the GP framework into a new class of time-changed GPs that allow for straightforward modelling of heavy-tailed non-Gaussian behaviours, while retaining a tractable conditional GP structure through an infinite mixture of non-homogeneous GPs representation. The conditional GP struc…
Aalto University（阿尔托大学）；University of Turku（图尔库大学）
This paper proposes a novel method for learning highly nonlinear, multivariate functions from examples. Our method takes advantage of the property that continuous functions can be approximated by polynomials, which in turn are representable by tensors. Hence the function learning problem is transformed into a tensor reconstruction problem, an inverse problem of the tensor decomposition. Our method incrementally builds up the unknown tensor from rank-one terms, which lets us control the complexity of the learned model and reduce the chance of overfitting. For learning the models, we present an …
In this tutorial we explain the inference procedures developed for the sparse Gaussian process (GP) regression and Gaussian process latent variable model (GPLVM). Due to page limit the derivation given in Titsias (2009) and Titsias & Lawrence (2010) is brief, hence getting a full picture of it requires collecting results from several different sources and a substantial amount of algebra to fill-in the gaps. Our main goal is thus to collect all the results and full derivations into one place to help speed up understanding this work. In doing so we present a re-parametrisation of the inference t…
Carnegie Mellon University（卡内基梅隆大学）；Microsoft Research, New York（微软研究院（纽约））；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Microsoft Research, Redmond（微软研究院（雷德蒙德））
We study the exploration problem in episodic MDPs with rich observations generated from a small number of latent states. Under certain identifiability assumptions, we demonstrate how to estimate a mapping from the observations to latent states inductively through a sequence of regression and clustering steps -- where previously decoded latent states provide labels for later regression problems -- and use it to construct good exploration policies. We provide finite-sample guarantees on the quality of the learned state decoding function and exploration policies, and complement our theory with an…
Using latent representations to link disjoint longitudinal data for mixed-effects regression
Institute of Medical Biometry and Statistics (IMBI), Medical Faculty and Medical Center – University of Freiburg, Germany（医学生物统计学研究所（IMBI）、医学 faculty 和医疗中心——弗赖堡大学，德国）；Freiburg Center for Data Analysis, Modeling and AI – University of Freiburg, Germany（弗赖堡数据分析、建模和人工智能中心——弗赖堡大学，德国）；Department of Mathematical Stochastics, Mathematical Institute – University of Freiburg, Germany（数学随机过程系、数学研究所——弗赖堡大学，德国）；Department of Neuropediatrics and Muscle Disorders, Medical Faculty and Medical Center – University of Freiburg, Germany（神经发育学与肌肉疾病系、医学 faculty 和医疗中心——弗赖堡大学，德国）；Bonn Center for Mathematical Life Sciences – University of Bonn, Germany（波恩数学生命科学中心——波恩大学，德国）；Life and Medical Sciences (LIMES) Institute – University of Bonn, Germany（生命科学与医学科学（LIMES）研究所——波恩大学，德国）；CIBSS, Centre for Integrative Biological Signalling Studies – University of Freiburg, Germany（整合生物信号研究中心（CIBSS）——弗赖堡大学，德国）
A recent literature in econometrics models unobserved cross-sectional heterogeneity in panel data by assigning each cross-sectional unit a one-dimensional, discrete latent type. Such models have been shown to allow estimation and inference by regression clustering methods. This paper is motivated by the finding that the clustered heterogeneity models studied in this literature can be badly misspecified, even when the panel has significant discrete cross-sectional structure. To address this issue, we generalize previous approaches to discrete unobserved heterogeneity by allowing each unit to ha…
