Robust Bayesian methods for high-dimensional regression problems under diverse sparse regimes are studied. Traditional shrinkage priors are primarily designed to detect a handful of signals from tens of thousands of predictors in the so-called ultra-sparsity domain. However, they may not perform desirably when the degree of sparsity is moderate. In this paper, we propose a robust sparse estimation method under diverse sparsity regimes, which has a tail-adaptive shrinkage property. In this property, the tail-heaviness of the prior adjusts adaptively, becoming larger or smaller as the sparsity level increases or decreases, respectively, to accommodate more or fewer signals, a posteriori. We propose a global-local-tail (GLT) Gaussian mixture distribution that ensures this property. We examine the role of the tail-index of the prior in relation to the underlying sparsity level and demonstrate that the GLT posterior contracts at the minimax optimal rate for sparse normal mean models. We apply both the GLT prior and the Horseshoe prior to a real data problem and simulation examples. Our findings indicate that the varying tail rule based on the GLT prior offers advantages over a fixed tail rule based on the Horseshoe prior in diverse sparsity regimes.
We consider the problem of learning the structure of a high dimensional precision matrix under sparsity assumptions. We propose to use a shrinkage prior, called the DL-graphical prior based on the Dirichlet-Laplace prior used for the Gaussian mean problem. A posterior sampling scheme based on Gibbs sampling is also provided along with theoretical guarantees of the method by obtaining the posterior convergence rate of the precision matrix.
We investigate shrinkage priors for constructing Bayesian predictive distributions. It is shown that there exist shrinkage predictive distributions asymptotically dominating Bayesian predictive distributions based on the Jeffreys prior or other vague priors if the model manifold satisfies some differential geometric conditions. Kullback--Leibler divergence from the true distribution to a predictive distribution is adopted as a loss function. Conformal transformations of model manifolds corresponding to vague priors are introduced. We show several examples where shrinkage predictive distributio…
The paper discusses shrinkage priors which impose increasing shrinkage in a sequence of parameters. We review the cumulative shrinkage process (CUSP) prior of Legramanti et al. (2020), which is a spike-and-slab shrinkage prior where the spike probability is stochastically increasing and constructed from the stick-breaking representation of a Dirichlet process prior. As a first contribution, this CUSP prior is extended by involving arbitrary stick-breaking representations arising from beta distributions. As a second contribution, we prove that exchangeable spike-and-slab priors, which are popul…
Department of Statistics, University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校统计学系）
We consider a Bayesian framework for estimating a high-dimensional sparse precision matrix, in which adaptive shrinkage and sparsity are induced by a mixture of Laplace priors. Besides discussing our formulation from the Bayesian standpoint, we investigate the MAP (maximum a posteriori) estimator from a penalized likelihood perspective that gives rise to a new non-convex penalty approximating the $\ell_0$ penalty. Optimal error rates for estimation consistency in terms of various matrix norms along with selection consistency for sparse structure recovery are shown for the unique MAP estimator …
During the past decade, shrinkage priors have received much attention in Bayesian analysis of high-dimensional data. This paper establishes the posterior consistency for high-dimensional linear regression with a class of shrinkage priors, which has a heavy and flat tail and allocates a sufficiently large probability mass in a very small neighborhood of zero. While enjoying its efficiency in posterior simulations, the shrinkage prior can lead to a nearly optimal posterior contraction rate and variable selection consistency as the spike-and-slab prior. Our numerical results show that under the p…
In this paper, we treat estimation and prediction problems where negative multinomial variables are observed and in particular consider unbalanced settings. First, the problem of estimating multiple negative multinomial parameter vectors under the standardized squared error loss is treated and a new empirical Bayes estimator which dominates the UMVU estimator under suitable conditions is derived. Second, we consider estimation of the joint predictive density of several multinomial tables under the Kullback-Leibler divergence and obtain a sufficient condition under which the Bayesian predictive…
Shrinkage prior has gained great successes in many data analysis, however, its applications mostly focus on the Bayesian modeling of sparse parameters. In this work, we will apply Bayesian shrinkage to model high dimensional parameter that possesses an unknown blocking structure. We propose to impose heavy-tail shrinkage prior, e.g., $t$ prior, on the differences of successive parameter entries, and such a fusion prior will shrink successive differences towards zero and hence induce posterior blocking. Comparing to conventional Bayesian fused lasso which implements Laplace fusion prior, $t$ fu…
The negative multinomial distribution is a multivariate generalization of the negative binomial distribution. In this paper, we consider the problem of estimating an unknown matrix of probabilities on the basis of observations of negative multinomial variables under the standardized squared error loss. First, a general sufficient condition for a shrinkage estimator to dominate the UMVU estimator is derived and an empirical Bayes estimator satisfying the condition is constructed. Next, a hierarchical shrinkage prior is introduced, an associated Bayes estimator is shown to dominate the UMVU esti…
We develop singular value shrinkage priors for the mean matrix parameters in the matrix-variate normal model with known covariance matrices. Our priors are superharmonic and put more weight on matrices with smaller singular values. They are a natural generalization of the Stein prior. Bayes estimators and Bayesian predictive densities based on our priors are minimax and dominate those based on the uniform prior in finite samples. In particular, our priors work well when the true value of the parameter has low rank.
The present paper investigates theoretical performance of various Bayesian wavelet shrinkage rules in a nonparametric regression model with i.i.d. errors which are not necessarily normally distributed. The main purpose is comparison of various Bayesian models in terms of their frequentist asymptotic optimality in Sobolev and Besov spaces. We establish a relationship between hyperparameters, verify that the majority of Bayesian models studied so far achieve theoretical optimality, state which Bayesian models cannot achieve optimal convergence rate and explain why it happens.
The present work describes simulation studies to compare the performances of bayesian wavelet shrinkage methods in estimating component curves from aggregated functional data. To do so, five methods were considered: the bayesian shrinkage rule under logistic prior by Sousa (2020), bayesian shrinkage rule under beta prior by Sousa et al. (2020), Large Posterior Mode method by Cutillo et al. (2008), Amplitude-scale invariant Bayes Estimator by Figueiredo and Nowak (2001) and Bayesian Adaptive Multiresolution Smoother by Vidakovic and Ruggeri (2001). Further, the so called Donoho-Johnstone test f…
Selecting a subset of variables for linear models remains an active area of research. This paper reviews many of the recent contributions to the Bayesian model selection and shrinkage prior literature. A posterior variable selection summary is proposed, which distills a full posterior distribution over regression coefficients into a sequence of sparse linear predictors.
In wavelet shrinkage and thresholding, most of the standard techniques do not consider information that wavelet coefficients might be bounded, although information about bounded energy in signals can be readily available. To address this, we present a Bayesian approach for shrinkage of bounded wavelet coefficients in the context of non-parametric regression. We propose the use of a zero-contaminated beta distribution with a support symmetric around zero as the prior distribution for the location parameter in the wavelet domain in models with additive gaussian errors. The hyperparameters of the…
Shrinkage prior are becoming more and more popular in Bayesian modeling for high dimensional sparse problems due to its computational efficiency. Recent works show that a polynomially decaying prior leads to satisfactory posterior asymptotics under regression models. In the literature, statisticians have investigated how the global shrinkage parameter, i.e., the scale parameter, in a heavy tail prior affects the posterior contraction. In this work, we explore how the shape of the prior, or more specifically, the polynomial order of the prior tail affects the posterior. We discover that, under …
Heavy-tailed distributions are frequently used to enhance the robustness of regression and classification methods to outliers in output space. Often, however, we are confronted with "outliers" in input space, which are isolated observations in sparsely populated regions. We show that heavy-tailed stochastic processes (which we construct from Gaussian processes via a copula), can be used to improve robustness of regression and classification estimators to such outliers by selectively shrinking them more strongly in sparse regions than in dense regions. We carry out a theoretical analysis to sho…
Penalized regression methods, such as $L_1$ regularization, are routinely used in high-dimensional applications, and there is a rich literature on optimality properties under sparsity assumptions. In the Bayesian paradigm, sparsity is routinely induced through two-component mixture priors having a probability mass at zero, but such priors encounter daunting computational problems in high dimensions. This has motivated an amazing variety of continuous shrinkage priors, which can be expressed as global-local scale mixtures of Gaussians, facilitating computation. In sharp contrast to the correspo…
We consider Bayesian shrinkage predictions for the Normal regression problem under the frequentist Kullback-Leibler risk function. Firstly, we consider the multivariate Normal model with an unknown mean and a known covariance. While the unknown mean is fixed, the covariance of future samples can be different from training samples. We show that the Bayesian predictive distribution based on the uniform prior is dominated by that based on a class of priors if the prior distributions for the covariance and future covariance matrices are rotation invariant. Then, we consider a class of priors for t…
NTT Advanced Technology Corporation（NTT先进技术公司）；The University of Electro-Communications（电气通信大学）
Sparse convex clustering is to cluster observations and conduct variable selection simultaneously in the framework of convex clustering. Although a weighted $L_1$ norm is usually employed for the regularization term in sparse convex clustering, its use increases the dependence on the data and reduces the estimation accuracy if the sample size is not sufficient. To tackle these problems, this paper proposes a Bayesian sparse convex clustering method based on the ideas of Bayesian lasso and global-local shrinkage priors. We introduce Gibbs sampling algorithms for our method using scale mixtures …
We consider nonparametric Bayesian estimation and prediction for nonhomogeneous Poisson process models with unknown intensity functions. We propose a class of improper priors for intensity functions. Nonparametric Bayesian inference with kernel mixture based on the class improper priors is shown to be useful, although improper priors have not been widely used for nonparametric Bayes problems. Several theorems corresponding to those for finite-dimensional independent Poisson models hold for nonhomogeneous Poisson process models with infinite-dimensional parameter spaces. Bayesian estimation and…
We consider the problem of estimation and structure learning of high dimensional signals via a normal sequence model, where the underlying parameter vector is piecewise constant, or has a block structure. We develop a Bayesian fusion estimation method by using the Horseshoe prior to induce a strong shrinkage effect on successive differences in the mean parameters, simultaneously imposing sufficient prior concentration for non-zero values of the same. The proposed method thus facilitates consistent estimation and structure recovery of the signal pieces. We provide theoretical justifications of …
Monash University（莫纳什大学）；The University of Melbourne（墨尔本大学）
Global-local shrinkage hierarchies are an important innovation in Bayesian estimation. We propose the use of log-scale distributions as a novel basis for generating familes of prior distributions for local shrinkage hyperparameters. By varying the scale parameter one may vary the degree to which the prior distribution promotes sparsity in the coefficient estimates. By examining the class of distributions over the logarithm of the local shrinkage parameter that have log-linear, or sub-log-linear tails, we show that many standard prior distributions for local shrinkage parameters can be unified …
In this article, we consider two forms of shrinkage estimators of the mean $θ$ of a multivariate normal distribution $X\sim N_{p}\left(θ, σ^{2}I_{p}\right)$ where $σ^{2}$ is unknown. We take the prior law $θ\sim N_{p}\left(\upsilon, τ^{2}I_{p}\right)$ and we constuct a Modified Bayes estimator $δ_{B}^{\ast}$ and an Empirical Modified Bayes estimator $δ_{EB}^{\ast}$. We are interested in studying the minimaxity and the limits of risks ratios of these estimators, to the maximum likelihood estimator $X$, when $n$ and $p$ tend to infinity.
It is increasingly being realised that many real world time series are not stationary and exhibit evolving second-order autocovariance or spectral structure. This article introduces a Bayesian approach for modelling the evolving wavelet spectrum of a locally stationary wavelet time series. Our new method works by combining the advantages of a Haar-Fisz transformed spectrum with a simple, but powerful, Bayesian wavelet shrinkage method. Our new method produces excellent and stable spectral estimates and this is demonstrated via simulated data and on differenced infant ECG data. A major addition…
Most estimates for penalised linear regression can be viewed as posterior modes for an appropriate choice of prior distribution. Bayesian shrinkage methods, particularly the horseshoe estimator, have recently attracted a great deal of attention in the problem of estimating sparse, high-dimensional linear models. This paper extends these ideas, and presents a Bayesian grouped model with continuous global-local shrinkage priors to handle complex group hierarchies that include overlapping and multilevel group structures. As the posterior mean is never a sparse estimate of the linear model coeffic…
Bayesian nonparametric regression with dependent wavelets has dual shrinkage properties: there is shrinkage through a dependent prior put on functional differences, and shrinkage through the setting of most of the wavelet coefficients to zero through Bayesian variable selection methods. The methodology can deal with unequally spaced data and is efficient because of the existence of fast moves in model space for the MCMC computation. The methodology is illustrated on the problem of modeling the oscillations of Cepheid variable stars; these are a class of pulsating variable stars with the useful…
We provide a framework for assessing the default nature of a prior distribution using the property of regular variation, which we study for global-local shrinkage priors. In particular, we demonstrate the horseshoe priors, originally designed to handle sparsity, also possess regular variation and thus are appropriate for default Bayesian analysis. To illustrate our methodology, we solve a problem of non-informative priors due to Efron (1973), who showed standard flat non-informative priors in high-dimensional normal means model can be highly informative for nonlinear parameters of interest. We…
Kyoto University（京都大学）；National Institute of Informatics（国立信息学研究所）
A common strategy for sparse linear regression is to introduce regularization, which eliminates irrelevant features by letting the corresponding weights be zeros. However, regularization often shrinks the estimator for relevant features, which leads to incorrect feature selection. Motivated by the above-mentioned issue, we propose Bayesian masking (BM), a sparse estimation method which imposes no regularization on the weights. The key concept of BM is to introduce binary latent variables that randomly mask features. Estimating the masking rates determines the relevance of the features automati…
In this paper, we consider Bayesian variable selection problem of linear regression model with global-local shrinkage priors on the regression coefficients. We propose a variable selection procedure that select a variable if the ratio of the posterior mean to the ordinary least square estimate of the corresponding coefficient is greater than $1/2$. Under the assumption of orthogonal designs, we show that if the local parameters have polynomial-tailed priors, our proposed method enjoys the oracle property in the sense that it can achieve variable selection consistency and optimal estimation rat…
Use of continuous shrinkage priors -- with a "spike" near zero and heavy-tails towards infinity -- is an increasingly popular approach to induce sparsity in parameter estimates. When the parameters are only weakly identified by the likelihood, however, the posterior may end up with tails as heavy as the prior, jeopardizing robustness of inference. A natural solution is to "shrink the shoulders" of a shrinkage prior by lightening up its tails beyond a reasonable parameter range, yielding a regularized version of the prior. We develop a regularization approach which, unlike previous proposals, p…
In this paper we discuss Bayesian nonconvex penalization for sparse learning problems. We explore a nonparametric formulation for latent shrinkage parameters using subordinators which are one-dimensional Lévy processes. We particularly study a family of continuous compound Poisson subordinators and a family of discrete compound Poisson subordinators. We exemplify four specific subordinators: Gamma, Poisson, negative binomial and squared Bessel subordinators. The Laplace exponents of the subordinators are Bernstein functions, so they can be used as sparsity-inducing nonconvex penalty functions.…
High-dimensional data, where the number of variables exceeds or is comparable to the sample size, is now pervasive in many scientific applications. In recent years, Bayesian shrinkage models have been developed as effective and computationally feasible tools to analyze such data, especially in the context of linear regression. In this paper, we focus on the Normal-Gamma shrinkage model developed by Griffin and Brown. This model subsumes the popular Bayesian lasso model, and a three-block Gibbs sampling algorithm to sample from the resulting intractable posterior distribution has been developed…
We investigate predictive densities for multivariate normal models with unknown mean vectors and known covariance matrices. Bayesian predictive densities based on shrinkage priors often have complex representations, although they are effective in various problems. We consider extended normal models with mean vectors and covariance matrices as parameters, and adopt predictive densities that belong to the extended models including the original normal model. We adopt predictive densities that are optimal with respect to the posterior Bayes risk in the extended models. The proposed predictive dens…
The present paper proposes a bayesian approach for wavelet shrinkage with the use of a shrinkage prior based on the generalized secant hyperbolic distribution symmetric around zero in a nonparemetric regression problem. This shrinkage prior allows the control of the kurtosis of the coefficients, which impacts on the level of shrinkage on its extreme values. Statistical properties such as bias, variance, classical and bayesian risks of the rule are analyzed and performances of the proposed rule are obtained in simulations studies involving the Donoho-Johnstone test functions. Application of the…
Macroeconomists using large datasets often face the choice of working with either a large Vector Autoregression (VAR) or a factor model. In this paper, we develop methods for combining the two using a subspace shrinkage prior. Subspace priors shrink towards a class of functions rather than directly forcing the parameters of a model towards some pre-specified location. We develop a conjugate VAR prior which shrinks towards the subspace which is defined by a factor model. Our approach allows for estimating the strength of the shrinkage as well as the number of factors. After establishing the the…
We consider Markov chain Monte Carlo (MCMC) algorithms for Bayesian high-dimensional regression with continuous shrinkage priors. A common challenge with these algorithms is the choice of the number of iterations to perform. This is critical when each iteration is expensive, as is the case when dealing with modern data sets, such as genome-wide association studies with thousands of rows and up to hundred of thousands of columns. We develop coupling techniques tailored to the setting of high-dimensional regression with shrinkage priors, which enable practical, non-asymptotic diagnostics of conv…
The possibility of improving on the usual multivariate normal confidence was first discussed in Stein (1962). Using the ideas of shrinkage, through Bayesian and empirical Bayesian arguments, domination results, both analytic and numerical, have been obtained. Here we trace some of the developments in confidence set estimation.
Shrinkage priors for Bayesian Substitute Confounders
School of Mathematical Sciences, University of Nottingham, Nottingham, UK（诺丁汉大学数学科学学院）；Department of Statistics, Rice University, USA（里士满大学统计学系；伯克利国家实验室）；Lawrence Berkeley National Laboratory, USA（洛斯阿拉莫斯国家实验室统计科学组）；Statistical Sciences Group, Los Alamos National Laboratory, USA
There is a wide variety of models in which the dimension of the parameter space is unknown. For example, in factor analysis the number of latent factors is typically not known and has to be inferred from the observed data. Although classical shrinkage priors are useful in these contexts, increasing shrinkage priors can provide a more effective option, which progressively penalizes expansions with growing complexity. In this article we propose a novel increasing shrinkage prior, named the cumulative shrinkage process, for the parameters controlling the dimension in over-complete formulations. O…
This study proposes a novel hierarchical prior for inferring possibly low-rank matrices measured with noise. We consider three-component matrix factorization, as in singular value decomposition, and its fully Bayesian inference. The proposed prior is specified by a scale mixture of exponential distributions that has spike and slab components. The weights for the spike/slab parts are inferred using a special prior based on a cumulative shrinkage process. The proposed prior is designed to increasingly aggressively push less important, or essentially redundant, singular values toward zero, leadin…
