Clustering time series into similar groups can improve models by combining information across like time series. While there is a well developed body of literature for clustering of time series, these approaches tend to generate clusters independently of model training which can lead to poor model fit. We propose a novel distributed approach that simultaneously clusters and fits autoregression models for groups of similar individuals. We apply a Wishart mixture model so as to cluster individuals while modeling the corresponding autocovariance matrices at the same time. The fitted Wishart scale matrices map to cluster-level autoregressive coefficients through the Yule-Walker equations, fitting robust parsimonious autoregressive mixture models. This approach is able to discern differences in underlying autocorrelation variation of time series in settings with large heterogeneous datasets. We prove consistency of our cluster membership estimator, asymptotic distributions of coefficients and compare our approach against competing methods through simulation as well as by fitting a COVID-19 forecast model.
We develop a mixture model for transition density approximation, together with soft model selection, in the presence of noisy and heterogeneous nonlinear dynamics. Our model builds on the Gaussian mixture transition distribution (MTD) model for continuous state spaces, extending component means with nonlinear functions that are modeled using Gaussian process (GP) priors. The resulting model flexibly captures nonlinear and heterogeneous lag dependence when several mixture components are active, identifies low-order nonlinear dependence while inferring relevant lags when few components are activ…
The standard approach to analyzing brain electrical activity is to examine the spectral density function (SDF) and identify predefined frequency bands that have the most substantial relative contributions to the overall variance of the signal. However, a limitation of this approach is that the precise frequency and bandwidth of oscillations vary with cognitive demands. Thus they should not be arbitrarily defined a priori in an experiment. In this paper, we develop a data-driven approach that identifies (i) the number of prominent peaks, (ii) the frequency peak locations, and (iii) their corres…
In this paper we consider the problem of dynamic clustering, where cluster memberships may change over time and clusters may split and merge over time, thus creating new clusters and destroying existing ones. We propose a Bayesian nonparametric approach to dynamic clustering via mixture modeling. Our approach relies on a novel time-dependent nonparametric prior defined by combining: i) a copula-based transformation of a Gaussian autoregressive process; ii) the stick-breaking construction of the Dirichlet process. Posterior inference is performed through a particle Markov chain Monte Carlo algo…
This paper introduces a fully Bayesian analysis of mixture autoregressive models with Student t components. With the capacity of capturing the behaviour in the tails of the distribution, the Student t MAR model provides a more flexible modelling framework than its Gaussian counterpart, leading to fitted models with fewer parameters and of easier interpretation. The degrees of freedom are also treated as random variables, and hence are included in the estimation process.
Bayesian Varying-Effects Vector Autoregressive Models for Inference of Brain Connectivity Networks and Covariate Effects in Pediatric Traumatic Brain Injury
Obtaining reliable estimates of conditional covariance matrices is an important task of heteroskedastic multivariate time series. In portfolio optimization and financial risk management, it is crucial to provide measures of uncertainty and risk as accurately as possible. We propose using mixture vector autoregressive (MVAR) models for portfolio optimization. Combining a mixture of distributions that depend on the recent history of the process, MVAR models can accommodate asymmetry, multimodality, heteroskedasticity and cross-correlation in multivariate time series data. For mixtures of Normal …
Vector autoregressive (VAR) models are popularly adopted for modelling high-dimensional time series, and their piecewise extensions allow for structural changes in the data. In VAR modelling, the number of parameters grow quadratically with the dimensionality which necessitates the sparsity assumption in high dimensions. However, it is debatable whether such an assumption is adequate for handling datasets exhibiting strong serial and cross-sectional correlations. We propose a piecewise stationary time series model that simultaneously allows for strong correlations as well as structural changes…
University of Oxford（牛津大学）；Novo Nordisk（诺和诺德）；University College London（伦敦大学学院）
Bayesian methods are a popular choice for statistical inference in small-data regimes due to the regularization effect induced by the prior. In the context of density estimation, the standard nonparametric Bayesian approach is to target the posterior predictive of the Dirichlet process mixture model. In general, direct estimation of the posterior predictive is intractable and so methods typically resort to approximating the posterior distribution as an intermediate step. The recent development of quasi-Bayesian predictive copula updates, however, has made it possible to perform tractable predi…
In longitudinal studies, repeated measures are collected over time and hence they tend to be serially correlated. In this paper we consider an extension of skew-normal/independent linear mixed models introduced by Lachos et al. (2010), where the error term has a dependence structure, such as damped exponential correlation or autoregressive correlation of order p. The proposed model provides flexibility in capturing the effects of skewness and heavy tails simultaneously when continuous repeated measures are serially correlated. For this robust model, we present an efficient EM-type algorithm fo…
Analysis of multivariate time series is a common problem in areas like finance and economics. The classical tool for this purpose are vector autoregressive models. These however are limited to the modeling of linear and symmetric dependence. We propose a novel copula-based model which allows for non-linear and asymmetric modeling of serial as well as between-series dependencies. The model exploits the flexibility of vine copulas which are built up by bivariate copulas only. We describe statistical inference techniques for the new model and demonstrate its usefulness in three relevant applicati…
In this study, we propose a hidden Markov mixture model for the analysis of gene expression measurements mapped to chromosome locations. These expression values represent preprocessed light intensities observed in each probe of Affymetrix oligonucleotide arrays. Here, the algorithm BLAT is used to align thousands of probe sequences to each chromosome. The main goal is to identify genome regions associated with high expression values which define clusters composed by consecutive observations. The proposed model assumes a mixture distribution in which one of the components (the one with the high…
Latent autoregressive processes are a popular choice to model time varying parameters. These models can be formulated as nonlinear state space models for which inference is not straightforward due to the high number of parameters. Therefore maximum likelihood methods are often infeasible and researchers rely on alternative techniques, such as Gibbs sampling. But conventional Gibbs samplers are often tailored to specific situations and suffer from high autocorrelation among repeated draws. We present a Gibbs sampler for general nonlinear state space models with an univariate autoregressive stat…
Bayesian non-parametric methods based on Dirichlet process mixtures have seen tremendous success in various domains and are appealing in being able to borrow information by clustering samples that share identical parameters. However, such methods can face hurdles in heterogeneous settings where objects are expected to cluster only along a subset of axes or where clusters of samples share only a subset of identical parameters. We overcome such limitations by developing a novel class of product of Dirichlet process location-scale mixtures that enable independent clustering at multiple scales, wh…
We address regularised versions of the Expectation-Maximisation (EM) algorithm for Generalised Linear Mixed Models (GLMM) in the context of panel data (measured on several individuals at different time-points). A random response y is modelled by a GLMM, using a set X of explanatory variables and two random effects. The first one introduces the dependence within individuals on which data is repeatedly collected while the second one embodies the serially correlated time-specific effect shared by all the individuals. Variables in X are assumed many and redundant, so that regression demands regula…
Lung tumor tracking for radiotherapy requires real-time, multiple-step ahead forecasting of a quasi-periodic time series recording instantaneous tumor locations. We introduce a location-mixture autoregressive (LMAR) process that admits multimodal conditional distributions, fast approximate inference using the EM algorithm and accurate multiple-step ahead predictive distributions. LMAR outperforms several commonly used methods in terms of out-of-sample prediction accuracy using clinical data from lung tumor patients. With its superior predictive performance and real-time computation, the LMAR m…
Testing for regime switching when the regime switching probabilities are specified either as constants (`mixture models') or are governed by a finite-state Markov chain (`Markov switching models') are long-standing problems that have also attracted recent interest. This paper considers testing for regime switching when the regime switching probabilities are time-varying and depend on observed data (`observation-dependent regime switching'). Specifically, we consider the likelihood ratio test for observation-dependent regime switching in mixture autoregressive models. The testing problem is hig…
A new mixture autoregressive model based on Student's $t$-distribution is proposed. A key feature of our model is that the conditional $t$-distributions of the component models are based on autoregressions that have multivariate $t$-distributions as their (low-dimensional) stationary distributions. That autoregressions with such stationary distributions exist is not immediate. Our formulation implies that the conditional mean of each component model is a linear function of past observations and the conditional variance is also time varying. Compared to previous mixture autoregressive models ou…
Data consisting of time-indexed distributions of cross-sectional or intraday returns have been extensively studied in finance, and provide one example in which the data atoms consist of serially dependent probability distributions. Motivated by such data, we propose an autoregressive model for density time series by exploiting the tangent space structure on the space of distributions that is induced by the Wasserstein metric. The densities themselves are not assumed to have any specific parametric form, leading to flexible forecasting of future unobserved densities. The main estimation targets…
Imperial College London（帝国理工学院）；Cyprus University of Technology（塞浦路斯理工大学）
Generalized autoregressive conditional heteroscedasticity (GARCH) models have long been considered as one of the most successful families of approaches for volatility modeling in financial return series. In this paper, we propose an alternative approach based on methodologies widely used in the field of statistical machine learning. Specifically, we propose a novel nonparametric Bayesian mixture of Gaussian process regression models, each component of which models the noise variance process that contaminates the observed data as a separate latent Gaussian process driven by the observed data. T…
Mixture autoregressive (MAR) models provide a flexible way to model time series with predictive distributions which depend on the recent history of the process and are able to accommodate asymmetry and multimodality. Bayesian inference for such models offers the additional advantage of incorporating the uncertainty in the estimated models into the predictions. We introduce a new way of sampling from the posterior distribution of the parameters of MAR models which allows for covering the complete parameter space of the models, unlike previous approaches. We also propose a relabelling algorithm …
In this paper we propose an autoregressive wild bootstrap method to construct confidence bands around a smooth deterministic trend. The bootstrap method is easy to implement and does not require any adjustments in the presence of missing data, which makes it particularly suitable for climatological applications. We establish the asymptotic validity of the bootstrap method for both pointwise and simultaneous confidence bands under general conditions, allowing for general patterns of missing data, serial dependence and heteroskedasticity. The finite sample properties of the method are studied in…
Multivariate count time series models are an important tool for the analysis and prediction of infectious disease spread. We consider the endemic-epidemic framework, an autoregressive model class for infectious disease surveillance counts, and replace the default autoregression on counts from the previous time period with more flexible weighting schemes inspired by discrete-time serial interval distributions. We employ three different parametric formulations, each with an additional unknown weighting parameter estimated via a profile likelihood approach, and compare them to an unrestricted non…
This paper develops computationally feasible methods for estimating random effects models in the context of regression modelling of multiple independent time series of discrete valued counts in which there is serial dependence. Given covariates, random effects and process history, the observed responses at each time in each series are independent and have an exponential family distribution. We develop maximum likelihood estimation of the mixed effects model using an observation driven generalized linear autoregressive moving average specification for the serial dependence in each series. The p…
Linear Vector AutoRegressive (VAR) models where the innovations could be unconditionally heteroscedastic and serially dependent are considered. The volatility structure is deterministic and quite general, including breaks or trending variances as special cases. In this framework we propose Ordinary Least Squares (OLS), Generalized Least Squares (GLS) and Adaptive Least Squares (ALS) procedures. The GLS estimator requires the knowledge of the time-varying variance structure while in the ALS approach the unknown variance is estimated by kernel smoothing with the outer product of the OLS residual…
