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arXiv 2006.02528cs.LGstat.ML
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Learning across label confidence distributions using Filtered Transfer Learning

Cyclica(赛克利卡公司);University of Toronto(多伦多大学);Princess Margaret Cancer Centre(玛格丽特公主癌症中心);University Health Network(大学健康网络);Vector Institute(向量研究所)

Seyed Ali Madani Tonekaboni, Andrew E. Brereton, Zhaleh Safikhani, Andreas Windemuth, Benjamin Haibe-Kains, Stephen MacKinnon

英文摘要:

Performance of neural network models relies on the availability of large datasets with minimal levels of uncertainty. Transfer Learning (TL) models have been proposed to resolve the issue of small dataset size by letting the model train on a bigger, task-related reference dataset and then fine-tune on a smaller, task-specific dataset. In this work, we apply a transfer learning approach to improve predictive power in noisy data systems with large variable confidence datasets. We propose a deep neural network method called Filtered Transfer Learning (FTL) that defines multiple tiers of data confidence as separate tasks in a transfer learning setting. The deep neural network is fine-tuned in a hierarchical process by iteratively removing (filtering) data points with lower label confidence, and retraining. In this report we use FTL for predicting the interaction of drugs and proteins. We demonstrate that using FTL to learn stepwise, across the label confidence distribution, results in higher performance compared to deep neural network models trained on a single confidence range. We anticipate that this approach will enable the machine learning community to benefit from large datasets with uncertain labels in fields such as biology and medicine.

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