Colorectal cancer is the third most common cancer-related death after lung cancer and breast cancer worldwide. The risk of developing colorectal cancer could be reduced by early diagnosis of polyps during a colonoscopy. Computer-aided diagnosis systems have the potential to be applied for polyp screening and reduce the number of missing polyps. In this paper, we compare the performance of different deep learning architectures as feature extractors, i.e. ResNet, DenseNet, InceptionV3, InceptionResNetV2 and SE-ResNeXt in the encoder part of a U-Net architecture. We validated the performance of presented ensemble models on the CVC-Clinic (GIANA 2018) dataset. The DenseNet169 feature extractor combined with U-Net architecture outperformed the other counterparts and achieved an accuracy of 99.15\%, Dice similarity coefficient of 90.87%, and Jaccard index of 83.82%.
Indira Gandhi National Open University（英迪拉·甘地国立开放大学）
Colorectal cancer is one of fatal cancer worldwide. Colonoscopy is the standard treatment for examination, localization, and removal of colorectal polyps. However, it has been shown that the miss-rate of colorectal polyps during colonoscopy is between 6 to 27%. The use of an automated, accurate, and real-time polyp segmentation during colonoscopy examinations can help the clinicians to eliminate missing lesions and prevent further progression of colorectal cancer. The ``Medico automatic polyp segmentation challenge'' provides an opportunity to study polyp segmentation and build a fast segmenta…
University of Bergen（卑尔根大学）；SimulaMet（西穆拉梅特）；Nepal Medical College（尼泊尔医学院）；Kathmandu University（加德满都大学）；UiT The Arctic University of Norway（挪威北极大学）；University of Oslo（奥斯陆大学）；Oslo Metropolitan University（奥斯陆城市大学）
Polyps are the predecessors to colorectal cancer which is considered as one of the leading causes of cancer-related deaths worldwide. Colonoscopy is the standard procedure for the identification, localization, and removal of colorectal polyps. Due to variability in shape, size, and surrounding tissue similarity, colorectal polyps are often missed by the clinicians during colonoscopy. With the use of an automatic, accurate, and fast polyp segmentation method during the colonoscopy, many colorectal polyps can be easily detected and removed. The ``Medico automatic polyp segmentation challenge'' p…
Indira Gandhi National Open University（英迪拉·甘地国立开放大学）；Indian Statistical Institute（印度统计研究所）；Northwestern University（西北大学）
The detection and removal of precancerous polyps through colonoscopy is the primary technique for the prevention of colorectal cancer worldwide. However, the miss rate of colorectal polyp varies significantly among the endoscopists. It is well known that a computer-aided diagnosis (CAD) system can assist endoscopists in detecting colon polyps and minimize the variation among endoscopists. In this study, we introduce a novel deep learning architecture, named MKDCNet, for automatic polyp segmentation robust to significant changes in polyp data distribution. MKDCNet is simply an encoder-decoder n…
SimulaMet（西穆拉大都会研究所）；UiT The Arctic University of Norway（挪威UiT北极大学）；Oslo Metropolitan University（奥斯陆城市大学）；Augere Medical AS（奥杰雷医疗公司）；Sahlgrenska University Hospital（萨尔格伦斯卡大学医院）；Bærum Hospital（贝鲁姆医院）
Colorectal cancer is the third most common cause of cancer worldwide. According to Global cancer statistics 2018, the incidence of colorectal cancer is increasing in both developing and developed countries. Early detection of colon anomalies such as polyps is important for cancer prevention, and automatic polyp segmentation can play a crucial role for this. Regardless of the recent advancement in early detection and treatment options, the estimated polyp miss rate is still around 20\%. Support via an automated computer-aided diagnosis system could be one of the potential solutions for the over…
SimulaMet（西穆拉梅特研究所）；UIT The Arctic University of Norway（挪威北极大学）；University of Oxford（牛津大学）；Oslo Metropolitan University（奥斯陆城市大学）
Colonoscopy is the gold standard for examination and detection of colorectal polyps. Localization and delineation of polyps can play a vital role in treatment (e.g., surgical planning) and prognostic decision making. Polyp segmentation can provide detailed boundary information for clinical analysis. Convolutional neural networks have improved the performance in colonoscopy. However, polyps usually possess various challenges, such as intra-and inter-class variation and noise. While manual labeling for polyp assessment requires time from experts and is prone to human error (e.g., missed lesions)…
University of Science, VNU-HCM（胡志明市国家大学科学大学）；John von Neumann Institute, VNU-HCM（胡志明市国家大学约翰·冯·诺依曼研究所）；Vietnam National University, Ho Chi Minh city（越南国家大学胡志明市分校）
The Medico: Multimedia Task 2020 focuses on developing an efficient and accurate computer-aided diagnosis system for automatic segmentation [3]. We participate in task 1, Polyps segmentation task, which is to develop algorithms for segmenting polyps on a comprehensive dataset. In this task, we propose methods combining Residual module, Inception module, Adaptive Convolutional neural network with U-Net model, and PraNet for semantic segmentation of various types of polyps in endoscopic images. We select 5 runs with different architecture and parameters in our methods. Our methods show potential…
Histopathological characterization of colorectal polyps allows to tailor patients' management and follow up with the ultimate aim of avoiding or promptly detecting an invasive carcinoma. Colorectal polyps characterization relies on the histological analysis of tissue samples to determine the polyps malignancy and dysplasia grade. Deep neural networks achieve outstanding accuracy in medical patterns recognition, however they require large sets of annotated training images. We introduce UniToPatho, an annotated dataset of 9536 hematoxylin and eosin (H&E) stained patches extracted from 292 whole-…
University of Central Florida（中佛罗里达大学）；Mayo Clinic（妙佑医疗国际（梅奥诊所））；University of Catania（卡塔尼亚大学）
Colorectal cancer, largely arising from precursor lesions called polyps, remains one of the leading causes of cancer-related death worldwide. Current clinical standards require the resection and histopathological analysis of polyps due to test accuracy and sensitivity of optical biopsy methods falling substantially below recommended levels. In this study, we design a novel capsule network architecture (D-Caps) to improve the viability of optical biopsy of colorectal polyps. Our proposed method introduces several technical novelties including a novel capsule architecture with a capsule-average …
Hanoi University of Science and Technology（河内科技大学）；Hanoi Medical University（河内医科大学）；The Institute of Gastroenterology and Hepatology（胃肠病学与肝病学研究所）；Vietnam National University of Agriculture（越南国立农业大学）
Colorectal cancer is among the most common malignancies and can develop from high-risk colon polyps. Colonoscopy is an effective screening tool to detect and remove polyps, especially in the case of precancerous lesions. However, the missing rate in clinical practice is relatively high due to many factors. The procedure could benefit greatly from using AI models for automatic polyp segmentation, which provide valuable insights for improving colon polyp detection. However, precise segmentation is still challenging due to variations of polyps in size, shape, texture, and color. This paper propos…
Taiwan AI Labs（台湾人工智能实验室）；Academia Sinica（台湾“中央研究院”）；National Taiwan University（台湾大学）
In this paper, we propose a new dataset named EGDB, that con-tains transcriptions of the electric guitar performance of 240 tab-latures rendered with different tones. Moreover, we benchmark theperformance of two well-known transcription models proposed orig-inally for the piano on this dataset, along with a multi-loss Trans-former model that we newly propose. Our evaluation on this datasetand a separate set of real-world recordings demonstrate the influenceof timbre on the accuracy of guitar sheet transcription, the potentialof using multiple losses for Transformers, as well as the room forfur…
Australian Institute for Machine Learning（澳大利亚机器学习研究所）；University of Adelaide（阿德莱德大学）；South Australian Health and Medical Research Institute（南澳大利亚健康与医学研究所）；Singapore Management University（新加坡管理大学）
Current polyp detection methods from colonoscopy videos use exclusively normal (i.e., healthy) training images, which i) ignore the importance of temporal information in consecutive video frames, and ii) lack knowledge about the polyps. Consequently, they often have high detection errors, especially on challenging polyp cases (e.g., small, flat, or partially visible polyps). In this work, we formulate polyp detection as a weakly-supervised anomaly detection task that uses video-level labelled training data to detect frame-level polyps. In particular, we propose a novel convolutional transforme…
Fudan University（复旦大学）；Inception Institute of Artificial Intelligence（Inception人工智能研究院）；Huashan Hospital（华山医院）
Automatic colorectal polyp detection in colonoscopy video is a fundamental task, which has received a lot of attention. Manually annotating polyp region in a large scale video dataset is time-consuming and expensive, which limits the development of deep learning techniques. A compromise is to train the target model by using labeled images and infer on colonoscopy videos. However, there are several issues between the image-based training and video-based inference, including domain differences, lack of positive samples, and temporal smoothness. To address these issues, we propose an Image-video-…
Polyp-E: Benchmarking the Robustness of Deep Segmentation Models via Polyp Editing
School of Artificial Intelligence, Beijing University of Posts and Telecommunications（北京邮电大学人工智能学院）；The Fifth Medical Center, Chinese PLA General Hospital（中国人民解放军总医院第五医学中心）；Children’s Hospital of Zhejiang University School of Medicine（浙江大学医学院附属儿童医院）
Computerized detection of colonic polyps remains an unsolved issue because of the wide variation in the appearance, texture, color, size, and presence of the multiple polyp-like imitators during colonoscopy. In this paper, we propose a deep convolutional neural network based model for the computerized detection of polyps within colonoscopy images. The proposed model comprises 16 convolutional layers with 2 fully connected layers, and a Softmax layer, where we implement a unique approach using different convolutional kernels within the same hidden layer for deeper feature extraction. We applied…
Topo-VM-UNetV2: Encoding Topology into Vision Mamba UNet for Polyp Segmentation
Department of Computer Science, University of Texas Rio Grande Valley（德克萨斯理工大学里奥格兰德分校计算机科学系）；Department of Mathematical Sciences, The University of Texas at Dallas（德克萨斯大学达拉斯分校数学科学系）
This paper aims to contribute in bench-marking the automatic polyp segmentation problem using generative adversarial networks framework. Perceiving the problem as an image-to-image translation task, conditional generative adversarial networks are utilized to generate masks conditioned by the images as inputs. Both generator and discriminator are convolution neural networks based. The model achieved 0.4382 on Jaccard index and 0.611 as F2 score.
Neural Network Pruning for Real-time Polyp Segmentation
NepAl Applied Mathematics and Informatics Institute (NAAMII)（尼泊尔应用数学与信息学研究所（NAAMII））；Fogsphere (Redev AI Ltd)（Fogsphere（Redev AI有限公司））；University of Aberdeen（阿伯丁大学）
PolypDB: A Curated Multi-Center Dataset for Development of AI Algorithms in Colonoscopy
Northwestern University（西北大学）；Sahlgrenska University Hospital（萨尔格伦斯卡大学医院）；The University of Gothenburg（哥德堡大学）；Harvard University（哈佛大学）；University Hospital Würzburg（维尔茨堡大学医院）；Hanoi Medical University（河内医科大学）；The Institute of Gastroenterology and Hepatology, Hanoi, Vietnam（越南河内胃肠病与肝病研究所）；Ho Chi Minh University Medical Center（胡志明市大学医疗中心）
本文发布涵盖三国三中心、五种成像模态的 3934 张息肉图像数据集 PolypDB，并提供分割、检测与联邦学习基准，以支持结肠镜 AI 算法开发。
South Central University for Nationalities（中南民族大学）；Nanjing Eastern Theater General Hospital（南京东部战区总医院）
Wireless Capsule Endoscopy(WCE) has been widely used for the screening of gastrointestinal(GI) diseases, especially the small intestine, due to its advantages of non-invasive and painless imaging of the entire digestive tract.However, the huge amount of image data captured by WCE makes manual reading a process that requires a huge amount of tasks and can easily lead to missed detection and false detection of lesions.Therefore, In this paper, we propose a \textbf{T}wo-stage \textbf{M}ulti-scale \textbf{F}eature-fusion learning network(\textbf{TMFNet}) to automatically detect small intestinal po…
Colorectal cancer is a one of the highest causes of cancer-related death, especially in men. Polyps are one of the main causes of colorectal cancer and early diagnosis of polyps by colonoscopy could result in successful treatment. Diagnosis of polyps in colonoscopy videos is a challenging task due to variations in the size and shape of polyps. In this paper we proposed a polyp segmentation method based on convolutional neural network. Performance of the method is enhanced by two strategies. First, we perform a novel image patch selection method in the training phase of the network. Second, in …
Computer Vision Center（计算机视觉中心）；Universitat Autonoma de Barcelona（巴塞罗那自治大学）；Montreal Institute for Learning Algorithms（蒙特利尔学习算法研究所）；Université de Montréal（蒙特利尔大学）；École Polytechnique de Montréal（蒙特利尔理工学院）；Hospital Clinic（临床医院）；Universidad de Barcelona（巴塞罗那大学）；Imagia Inc.（Imagia公司）
Colorectal cancer (CRC) is the third cause of cancer death worldwide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss-rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aiming to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extend…
Oslo University Hospital（奥斯陆大学医院）；University of Oslo（奥斯陆大学）；Norwegian University of Science and Technology（挪威科技大学）；OmniVision Technologies Norway AS（OmniVision技术挪威公司）；LG CNS
Automatic polyp detection and segmentation are highly desirable for colon screening due to polyp miss rate by physicians during colonoscopy, which is about 25%. However, this computerization is still an unsolved problem due to various polyp-like structures in the colon and high interclass polyp variations in terms of size, color, shape, and texture. In this paper, we adapt Mask R-CNN and evaluate its performance with different modern convolutional neural networks (CNN) as its feature extractor for polyp detection and segmentation. We investigate the performance improvement of each feature extr…
Women’s Hospital School of Medicine, ZheJiang University（浙江大学医学院附属妇产科医院）；Affiliated Hospital of Zhejiang University（浙江大学附属医院）
Endoscopic diagnosis is an important means for gastric polyp detection. In this paper, a panoramic image of gastroscopy is developed, which can display the inner surface of the stomach intuitively and comprehensively. Moreover, the proposed automatic detection solution can help doctors locate the polyps automatically, and reduce missed diagnosis. The main contributions of this paper are: firstly, a gastroscopic panorama reconstruction method is developed. The reconstruction does not require additional hardware devices, and can solve the problem of texture dislocation and illumination imbalance…
COMSATS University Islamabad（COMSATS伊斯兰堡大学）；National University of Ireland, Galway（爱尔兰国立高威大学）；Lambe Institute of Translational Research（兰贝转化研究所）
Automatic recognition of Urdu handwritten digits and characters, is a challenging task. It has applications in postal address reading, bank's cheque processing, and digitization and preservation of handwritten manuscripts from old ages. While there exists a significant work for automatic recognition of handwritten English characters and other major languages of the world, the work done for Urdu lan-guage is extremely insufficient. This paper has two goals. Firstly, we introduce a pioneer dataset for handwritten digits and characters of Urdu, containing samples from more than 900 individuals. S…
Colorectal cancer is a leading cause of cancer death for both men and women. For this reason, histopathological characterization of colorectal polyps is the major instrument for the pathologist in order to infer the actual risk for cancer and to guide further follow-up. Colorectal polyps diagnosis includes the evaluation of the polyp type, and more importantly, the grade of dysplasia. This latter evaluation represents a critical step for the clinical follow-up. The proposed deep learning-based classification pipeline is based on state-of-the-art convolutional neural network, trained using prop…
This paper is created to explore deep learning models and algorithms that results in highest accuracy in detecting polyp on colonoscopy images. Previous studies implemented deep learning using convolution neural network (CNN) algorithm in detecting polyp and non-polyp. Other studies used dropout, and data augmentation algorithm but mostly not checking the overfitting, thus, include more than four-layer modelss. Rulei Yu et.al from the Institute of Software, Chinese Academy of Sciences said that transfer learning is better talking about performance or improving the previous used algorithm. Most…
Open-Source Manually Annotated Vocal Tract Database for Automatic Segmentation from 3D MRI Using Deep Learning: Benchmarking 2D and 3D Convolutional and Transformer Networks
University of Iowa（爱荷华大学）；Shenandoah University（谢南多厄大学）
Universitat Pompeu Fabra（庞培法布拉大学）；New York University（纽约大学）；European Commission, Joint Research Centre（欧盟委员会联合研究中心）
This paper addresses the extraction of multiple F0 values from polyphonic and a cappella vocal performances using convolutional neural networks (CNNs). We address the major challenges of ensemble singing, i.e., all melodic sources are vocals and singers sing in harmony. We build upon an existing architecture to produce a pitch salience function of the input signal, where the harmonic constant-Q transform (HCQT) and its associated phase differentials are used as an input representation. The pitch salience function is subsequently thresholded to obtain a multiple F0 estimation output. For traini…
Hamburg University of Technology（汉堡工业大学）；Universitätsklinikum Hamburg-Eppendorf（汉堡-埃彭多夫大学医学中心）
Colorectal Cancer(CRC) poses a great risk to public health. It is the third most common cause of cancer in the US. Development of colorectal polyps is one of the earliest signs of cancer. Early detection and resection of polyps can greatly increase survival rate to 90%. Manual inspection can cause misdetections because polyps vary in color, shape, size and appearance. To this end, Computer-Aided Diagnosis systems(CADx) has been proposed that detect polyps by processing the colonoscopic videos. The system acts a secondary check to help clinicians reduce misdetections so that polyps may be resec…
Hanoi University of Science and Technology（河内科技大学）；Hanoi Medical University（河内医科大学）；The Institute of Gastroenterology and Hepatology（胃肠肝病学研究所）；University of Medicine and Pharmacy, Hue University（顺化大学医药大学）；Vietnam National University of Agriculture（越南国立农业大学）
Automatic polyp segmentation has proven to be immensely helpful for endoscopy procedures, reducing the missing rate of adenoma detection for endoscopists while increasing efficiency. However, classifying a polyp as being neoplasm or not and segmenting it at the pixel level is still a challenging task for doctors to perform in a limited time. In this work, we propose a fine-grained formulation for the polyp segmentation problem. Our formulation aims to not only segment polyp regions, but also identify those at high risk of malignancy with high accuracy. In addition, we present a UNet-based neur…
Norwegian University of Science and Technology (NTNU)（挪威科技大学（NTNU））；Oslo University Hospital（奥斯陆大学医院）；University of Oslo (UiO)（奥斯陆大学（UiO））
One of the major obstacles in automatic polyp detection during colonoscopy is the lack of labeled polyp training images. In this paper, we propose a framework of conditional adversarial networks to increase the number of training samples by generating synthetic polyp images. Using a normal binary form of polyp mask which represents only the polyp position as an input conditioned image, realistic polyp image generation is a difficult task in a generative adversarial networks approach. We propose an edge filtering-based combined input conditioned image to train our proposed networks. This enable…
Bournemouth University（伯恩茅斯大学）；Australian Institute for Machine Learning, University of Adelaide（阿德莱德大学澳大利亚机器学习研究所）；BCN Medtech（巴塞罗那医疗科技公司）；Universitat Pompeu Fabra（庞培法布拉大学）；ICREA（加泰罗尼亚高等研究院）
Polyps represent an early sign of the development of Colorectal Cancer. The standard procedure for their detection consists of colonoscopic examination of the gastrointestinal tract. However, the wide range of polyp shapes and visual appearances, as well as the reduced quality of this image modality, turn their automatic identification and segmentation with computational tools into a challenging computer vision task. In this work, we present a new strategy for the delineation of gastrointestinal polyps from endoscopic images based on a direct extension of common encoder-decoder networks for se…
SimulaMet（西穆拉梅特研究所）；UIT The Arctic University of Norway（挪威北极大学）；Augere Medical AS（奥热医疗公司）；University of Oslo（奥斯陆大学）；Kristiania University College（克里斯蒂安尼亚大学学院）；Oslo Metropolitan University（奥斯陆城市大学）；Oslo University Hospital（奥斯陆大学医院）
Pixel-wise image segmentation is a highly demanding task in medical-image analysis. In practice, it is difficult to find annotated medical images with corresponding segmentation masks. In this paper, we present Kvasir-SEG: an open-access dataset of gastrointestinal polyp images and corresponding segmentation masks, manually annotated by a medical doctor and then verified by an experienced gastroenterologist. Moreover, we also generated the bounding boxes of the polyp regions with the help of segmentation masks. We demonstrate the use of our dataset with a traditional segmentation approach and …
Sun Yat-sen University（中山大学）；Shenzhen Research Institute of Big Data（深圳大数据研究院）；Pazhou Lab（琶洲实验室）；The Sixth Affiliated Hospital, Sun Yat-sen University（中山大学附属第六医院）
Automatic and accurate polyp segmentation plays an essential role in early colorectal cancer diagnosis. However, it has always been a challenging task due to 1) the diverse shape, size, brightness and other appearance characteristics of polyps, 2) the tiny contrast between concealed polyps and their surrounding regions. To address these problems, we propose a lesion-aware dynamic network (LDNet) for polyp segmentation, which is a traditional u-shape encoder-decoder structure incorporated with a dynamic kernel generation and updating scheme. Specifically, the designed segmentation head is condi…
Colonoscopy is widely recognised as the gold standard procedure for the early detection of colorectal cancer (CRC). Segmentation is valuable for two significant clinical applications, namely lesion detection and classification, providing means to improve accuracy and robustness. The manual segmentation of polyps in colonoscopy images is time-consuming. As a result, the use of deep learning (DL) for automation of polyp segmentation has become important. However, DL-based solutions can be vulnerable to overfitting and the resulting inability to generalise to images captured by different colonosc…
Colorectal cancer is one of the common cancers in the United States. Polyp is one of the main causes of the colonic cancer and early detection of polyps will increase chance of cancer treatments. In this paper, we propose a novel classification of informative frames based on a convolutional neural network with binarized weights. The proposed CNN is trained with colonoscopy frames along with the labels of the frames as input data. We also used binarized weights and kernels to reduce the size of CNN and make it suitable for implementation in medical hardware. We evaluate our proposed method usin…
Indira Gandhi National Open University（英迪拉·甘地国立开放大学）；Larkin Community Hospital Palm Springs Campus（拉金社区医院棕榈泉院区）；Long Island Jewish Valley Stream（长岛犹太谷溪医院）；Feinberg School of Medicine, Northwestern University（西北大学范伯格医学院）
Colorectal cancer (CRC) is one of the most common causes of cancer and cancer-related mortality worldwide. Performing colon cancer screening in a timely fashion is the key to early detection. Colonoscopy is the primary modality used to diagnose colon cancer. However, the miss rate of polyps, adenomas and advanced adenomas remains significantly high. Early detection of polyps at the precancerous stage can help reduce the mortality rate and the economic burden associated with colorectal cancer. Deep learning-based computer-aided diagnosis (CADx) system may help gastroenterologists to identify po…
National Institute of Standards and Technology（美国国家标准与技术研究院）；Colorado State University（科罗拉多州立大学）；University of Colorado（科罗拉多大学）；Hanoi University of Science and Technology（河内科技大学）；Hanoi Medical University（河内医科大学）；Institute of Gastroenterology and Hepatology（胃肠病学与肝病学研究所）；University of Medicine and Pharmacy, Hue University（顺化大学医学与药学院）；Vietnam National University of Agriculture（越南国立农业大学）
In recent years, computer-aided automatic polyp segmentation and neoplasm detection have been an emerging topic in medical image analysis, providing valuable support to colonoscopy procedures. Attentions have been paid to improving the accuracy of polyp detection and segmentation. However, not much focus has been given to latency and throughput for performing these tasks on dedicated devices, which can be crucial for practical applications. This paper introduces a novel deep neural network architecture called BlazeNeo, for the task of polyp segmentation and neoplasm detection with an emphasis …
Validating polyp and instrument segmentation methods in colonoscopy through Medico 2020 and MedAI 2021 Challenges
Northwestern University（西北大学）；Jadavpur University（贾达普大学）；Technische Universität Hamburg（汉堡工业大学）；SimulaMet（西穆拉梅特研究所）；Julius-Maximilian University of Würzburg（维尔茨堡大学）；Australian National University（澳大利亚国立大学）；Gachon University（嘉泉大学）；University of Oxford（牛津大学）；University of Bergen（卑尔根大学）；University of Oslo（奥斯陆大学）；Swedish Medical Center（瑞典医疗中心）；National University of Computer and Emerging Sciences（国家计算机与新兴科学大学）；University of Science, VNU-HCM（胡志明市国家大学科学大学）
Colorectal cancer from the appearance of polyps that can be benign or malignant is one of the most fatal diseases in the world. To find these polyps in patients, colonoscopy is performed, which is a very efficient technique in this case. Clinically, detecting and segmenting these polyps in order to determine their presence or not is a very difficult process that requires a lot of time and experience from professionals, depending directly on these factors. Therefore, it becomes increasingly important to have an automatic, effective and reliable method of detecting and segmenting these polyps, m…
Dartmouth College（达特茅斯学院）；Dartmouth-Hitchcock Medical Center（达特茅斯-希区柯克医疗中心）
We present an image translation approach to generate augmented data for mitigating data imbalances in a dataset of histopathology images of colorectal polyps, adenomatous tumors that can lead to colorectal cancer if left untreated. By applying cycle-consistent generative adversarial networks (CycleGANs) to a source domain of normal colonic mucosa images, we generate synthetic colorectal polyp images that belong to diagnostically less common polyp classes. Generated images maintain the general structure of their source image but exhibit adenomatous features that can be enhanced with our propose…
Automatic segmentation of myocardial contours and relevant areas like infraction and no-reflow is an important step for the quantitative evaluation of myocardial infarction. In this work, we propose a cascaded convolutional neural network for automatic myocardial infarction segmentation from delayed-enhancement cardiac MRI. We first use a 2D U-Net to focus on the intra-slice information to perform a preliminary segmentation. After that, we use a 3D U-Net to utilize the volumetric spatial information for a subtle segmentation. Our method is evaluated on the MICCAI 2020 EMIDEC challenge dataset …
Focal cortical dysplasia (FCD) is one of the most common epileptogenic lesions associated with cortical development malformations. However, the accurate detection of the FCD relies on the radiologist professionalism, and in many cases, the lesion could be missed. In this work, we solve the problem of automatic identification of FCD on magnetic resonance images (MRI). For this task, we improve recent methods of Deep Learning-based FCD detection and apply it for a dataset of 15 labeled FCD patients. The model results in the successful detection of FCD on 11 out of 15 subjects.
Institute of Imaging and Computer Vision, RWTH Aachen University（亚琛工业大学成像与计算机视觉研究所）；Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology（卡尔斯鲁厄理工学院自动化与应用信息学研究所）
Automatic analyses and comparisons of different stages of embryonic development largely depend on a highly accurate spatiotemporal alignment of the investigated data sets. In this contribution, we assess multiple approaches for automatic staging of developing embryos that were imaged with time-resolved 3D light-sheet microscopy. The methods comprise image-based convolutional neural networks as well as an approach based on the PointNet architecture that directly operates on 3D point clouds of detected cell nuclei centroids. The experiments with four wild-type zebrafish embryos render both appro…
