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arXiv 2004.10300cond-mat.soft
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离子溶液的分子平均场论:Poisson-Nernst-Planck-Bikerman模型

Molecular Mean-Field Theory of Ionic Solutions: a Poisson-Nernst-Planck-Bikerman Model

Jinn-Liang Liu, Bob Eisenberg

摘要:

我们已经开发了一种分子平均场论理论--四阶Poisson-Nernst-Planck-Bikerman理论--用于模拟生物离子通道中的离子和水流动,通过处理具有间隙空隙、水的极化以及离子-离子和离子-水相关性的任何体积和形状的离子和水分子。该理论还可用于研究电池、燃料电池、纳米孔、多孔介质(包括水泥、地热盐水、海洋系统)中电解质溶液的热力学和电动力学性质,该理论可以计算来自蛋白质中所有原子以及通道孔中所有离子和水分子的电能和空间能,同时将电解质溶液保持在额外的-以及作为具有模拟实验数据的复杂性质的连续介质的细胞内浴。该理论已被实验和来自蛋白质数据库的短杆菌肽A通道、L型钙通道、钾通道和钠/钙交换器的具有真实结构的分子动力学数据所证实。用电解质水溶液中双电层微分电容和离子活度的实验或Monte Carlo数据也验证了这一结论。我们给出了一个深入的文献回顾的理论,即,费米分布的水和离子作为经典粒子的排除体积和动态相关性,依赖于盐的浓度,成分,温度,压力,远场边界条件等,在一个复杂的和复杂的方式在广泛的实验报告。的动态相关性是自洽的输出函数从一个四阶微分算子,描述离子-离子和离子-水的相关性,离子溶液的介电响应(介电常数),和水分子的极化与一个单一的相关长度参数。

英文摘要:

We have developed a molecular mean-field theory -- fourth-order Poisson-Nernst-Planck-Bikerman theory -- for modeling ionic and water flows in biological ion channels by treating ions and water molecules of any volume and shape with interstitial voids, polarization of water, and ion-ion and ion-water correlations. The theory can also be used to study thermodynamic and electrokinetic properties of electrolyte solutions in batteries, fuel cells, nanopores, porous media including cement, geothermal brines, the oceanic system, etc. The theory can compute electric and steric energies from all atoms in a protein and all ions and water molecules in a channel pore while keeping electrolyte solutions in the extra- and intracellular baths as a continuum dielectric medium with complex properties that mimic experimental data. The theory has been verified with experiments and molecular dynamics data from the gramicidin A channel, L-type calcium channel, potassium channel, and sodium/calcium exchanger with real structures from the Protein Data Bank. It was also verified with the experimental or Monte Carlo data of electric double-layer differential capacitance and ion activities in aqueous electrolyte solutions. We give an in-depth review of the literature about the most novel properties of the theory, namely, Fermi distributions of water and ions as classical particles with excluded volumes and dynamic correlations that depend on salt concentration, composition, temperature, pressure, far-field boundary conditions etc. in a complex and complicated way as reported in a wide range of experiments. The dynamic correlations are self-consistent output functions from a fourth-order differential operator that describes ion-ion and ion-water correlations, the dielectric response (permittivity) of ionic solutions, and the polarization of water molecules with a single correlation length parameter.

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