用于离散结构与不可逆系统发育MCMC的Zig-zag采样
Zig-zag sampling for discrete structures and non-reversible phylogenetic MCMC
AI总结:
本文提出一种适用于离散-连续混合状态空间的Zig-zag采样方法,无需假设离散变量结构,在基于Kingman溯祖过程的遗传学实例中相较Metropolis-Hastings算法实现高达数个数量级的效率提升,并避免了哈密顿蒙特卡洛的边界穿越复杂性。
摘要:
我们构造了一个Zig-zag过程,其目标分布定义在由离散变量和连续变量组成的混合状态空间上的后验分布。该构造不要求对离散变量之间的结构作任何假设。我们在基于Kingman coalescent(Kingman溯祖过程)的两个遗传学实例上展示了我们的方法,结果表明Zig-zag过程相较于经典Metropolis-Hastings算法可带来高达数个数量级的效率提升,并且非常适合并行计算。我们的构造类似于现有的混合状态空间上的Hamiltonian Monte Carlo(哈密顿蒙特卡洛)技术,后者在应用于溯祖过程时会遭遇实现上和分析上复杂的边界穿越问题。我们证明了连续时间Zig-zag过程避免了这些复杂情况。
英文摘要:
We construct a zig-zag process targeting a posterior distribution defined on a hybrid state space consisting of both discrete and continuous variables. The construction does not require any assumptions on the structure among discrete variables. We demonstrate our method on two examples in genetics based on the Kingman coalescent, showing that the zig-zag process can lead to efficiency gains of up to several orders of magnitude over classical Metropolis-Hastings algorithms, and that it is well suited to parallel computation. Our construction resembles existing techniques for Hamiltonian Monte Carlo on a hybrid state space, which suffers from implementationally and analytically complex boundary crossings when applied to the coalescent. We demonstrate that the continuous-time zig-zag process avoids these complications.
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