arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 2004.05024eess.IVcs.CVcs.LG

Weakly supervised multiple instance learning histopathological tumor segmentation

Paris-Saclay University(巴黎萨克雷大学);Gustave Roussy;CentraleSupélec(中央理工高等电力学院);Inserm(法国国家健康与医学研究院);Pathology Department(病理科);TheraPanacea

Marvin Lerousseau, Maria Vakalopoulou, Marion Classe, Julien Adam, Enzo Battistella, Alexandre Carré, Théo Estienne, Théophraste Henry, Eric Deutsch, Nikos Paragios

英文摘要:

Histopathological image segmentation is a challenging and important topic in medical imaging with tremendous potential impact in clinical practice. State of the art methods rely on hand-crafted annotations which hinder clinical translation since histology suffers from significant variations between cancer phenotypes. In this paper, we propose a weakly supervised framework for whole slide imaging segmentation that relies on standard clinical annotations, available in most medical systems. In particular, we exploit a multiple instance learning scheme for training models. The proposed framework has been evaluated on multi-locations and multi-centric public data from The Cancer Genome Atlas and the PatchCamelyon dataset. Promising results when compared with experts' annotations demonstrate the potentials of the presented approach. The complete framework, including $6481$ generated tumor maps and data processing, is available at https://github.com/marvinler/tcga_segmentation.

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