Here we present new joint reconstruction and regularization techniques inspired by ideas in microlocal analysis and lambda tomography, for the simultaneous reconstruction of the attenuation coefficient and electron density from X-ray transmission (i.e., X-ray CT) and backscattered data (assumed to be primarily Compton scattered). To demonstrate our theory and reconstruction methods, we consider the "parallel line segment" acquisition geometry of Webber and Miller ("Compton scattering tomography in translational geometries." Inverse Problems 36, no. 2 (2020): 025007), which is motivated by system architectures currently under development for airport security screening. We first present a novel microlocal analysis of the parallel line geometry which explains the nature of image artefacts when the attenuation coefficient and electron density are reconstructed separately. We next introduce a new joint reconstruction scheme for low effective $Z$ (atomic number) imaging ($Z<20$) characterized by a regularization strategy whose structure is derived from lambda tomography principles and motivated directly by the microlocal analytic results. Finally we show the effectiveness of our method in combating noise and image artefacts on simulated phantoms.
In order to determine the 3D structure of a thick sample, researchers have recently combined ptychography (for high resolution) and tomography (for 3D imaging) in a single experiment. 2-step methods are usually adopted for reconstruction, where the ptychography and tomography problems are often solved independently. In this paper, we provide a novel model and ADMM-based algorithm to jointly solve the ptychography-tomography problem iteratively, also employing total variation regularization. The proposed method permits large scan stepsizes for the ptychography experiment, requiring less measure…
In this work we consider the image reconstruction problem of sparsely sampled dynamic contrast-enhanced (DCE) magnetic resonance imaging (MRI). DCE-MRI is a technique for acquiring a series of MR images before, during and after intravenous contrast agent administration, and it is used to study microvascular structure and perfusion. To overcome the ill-posedness of the related spatio-temporal inverse problem, we use regularization. In regularization one of the main problems is how to determine the regularization parameter which controls the balance between data fitting term and regularization t…
George Mason University（乔治梅森大学）；Argonne National Laboratory（阿贡国家实验室）
In this work we consider a generalized bilevel optimization framework for solving inverse problems. We introduce fractional Laplacian as a regularizer to improve the reconstruction quality, and compare it with the total variation regularization. We emphasize that the key advantage of using fractional Laplacian as a regularizer is that it leads to a linear operator, as opposed to the total variation regularization which results in a nonlinear degenerate operator. Inspired by residual neural networks, to learn the optimal strength of regularization and the exponent of fractional Laplacian, we de…
Fluorescence molecular tomography (FMT) is an emerging powerful tool for biomedical research. There are two factors that influence FMT reconstruction most effectively. The first one is the regularization techniques. Traditional methods such as Tikhonov regularization suffer from low resolution and poor signal to noise ratio. Therefore sparse regularization techniques have been introduced to improve the reconstruction quality. The second factor is the illumination pattern. A better illumination pattern ensures the quantity and quality of the information content of the data set thus leading to b…
We develop a 2D travel time tomography method which regularizes the inversion by modeling groups of slowness pixels from discrete slowness maps, called patches, as sparse linear combinations of atoms from a dictionary. We propose to use dictionary learning during the inversion to adapt dictionaries to specific slowness maps. This patch regularization, called the local model, is integrated into the overall slowness map, called the global model. The local model considers small-scale variations using a sparsity constraint and the global model considers larger-scale features constrained using $\el…
Joint ptycho-tomography is a powerful computational imaging framework to recover the refractive properties of a 3D object while relaxing the requirements for probe overlap that is common in conventional phase retrieval. We use an augmented Lagrangian scheme for formulating the constrained optimization problem and employ an alternating direction method of multipliers (ADMM) for the joint solution. ADMM allows the problem to be split into smaller and computationally more efficient subproblems: ptychographic phase retrieval, tomographic reconstruction, and regularization of the solution. We exten…
In this paper, we formulate the reconstruction problem in diffuse optical tomography (DOT) in a statistical setting for determining the optical parameters, scattering and absorption, from boundary photon density measurements. A special kind of adaptive Metropolis algorithm for the reconstruction procedure using sparsity and total variation prior is presented. Finally, a simulation study of this technique with different regularization functions and its comparison to the deterministic Iteratively Regularized Gauss Newton method shows the effectiveness and stability of the method.
In optoacoustic tomography, image reconstruction is often performed with incomplete or noisy data, leading to reconstruction errors. Significant improvement in reconstruction accuracy may be achieved in such cases by using nonlinear regularization schemes, such as total-variation minimization and $L_1$-based sparsity-preserving schemes. In this paper, we introduce a new framework for optoacoustic image reconstruction based on adaptive anisotropic total-variation regularization, which is more capable of preserving complex boundaries than conventional total-variation regularization. The new sche…
Low dose X-ray computed tomography (LDCT) is desirable for reduced patient dose. This work develops image reconstruction methods with deep learning (DL) regularization for LDCT. Our methods are based on unrolling of proximal forward-backward splitting (PFBS) framework with data-driven image regularization via deep neural networks. In contrast with PFBS-IR that utilizes standard data fidelity updates via iterative reconstruction (IR) method, PFBS-AIR involves preconditioned data fidelity updates that fuse analytical reconstruction (AR) method and IR in a synergistic way, I.e. fused analytical a…
Physics-Driven Neural Compensation For Electrical Impedance Tomography
School of Biomedical engineering University of Science and Technology of China（生物医学工程学院 中国科学技术大学）；CAS Key Laboratory of Microscale Magnetic Resonance University of Science and Technology of China（微尺度磁共振CAS重点实验室 中国科学技术大学）
One of the advantages of spectral computed tomography (CT) is it can achieve accurate material components using the material decomposition methods. The image-based material decomposition is a common method to obtain specific material components, and it can be divided into two steps: image reconstruction and post material decomposition. To obtain accurate material maps, the image reconstruction method mainly focuses on improving image quality by incorporating regularization priors. Very recently, the regularization priors are introduced into the post material decomposition procedure in the iter…
Spectral domain optical coherence tomography (OCT) offers high resolution multidimensional imaging, but generally suffers from defocussing, intensity falloff and shot noise, causing artifacts and image degradation along the imaging depth. In this work, we develop an iterative statistical reconstruction technique, based upon the interferometric synthetic aperture microscopy (ISAM) model with additive noise, to actively compensate for these effects. For the ISAM re-sampling, we use a non uniform FFT with Kaiser-Bessel interpolation, offering efficiency and high accuracy. We then employ an accele…
In this work, we investigate the application of deep learning methods for computed tomography in the context of having a low-data regime. As motivation, we review some of the existing approaches and obtain quantitative results after training them with different amounts of data. We find that the learned primal-dual has an outstanding performance in terms of reconstruction quality and data efficiency. However, in general, end-to-end learned methods have two issues: a) lack of classical guarantees in inverse problems and b) lack of generalization when not trained with enough data. To overcome the…
X-ray phase contrast tomography (XPCT) is widely used for 3D imaging of objects with weak contrast in X-ray absorption index but strong contrast in refractive index decrement. To reconstruct an object imaged using XPCT, phase retrieval algorithms are first used to estimate the X-ray phase projections, which is the 2D projection of the refractive index decrement, at each view. Phase retrieval is followed by refractive index decrement reconstruction from the phase projections using an algorithm such as filtered back projection (FBP). In practice, phase retrieval is most commonly solved by approx…
Classical total variation (TV) based iterative reconstruction algorithms assume that the signal is piecewise smooth, which causes reconstruction results to suffer from the over-smoothing effect. To address this problem, this work presents a novel computed tomography (CT) reconstruction method for the few-view problem called the group-sparsity regularization-based simultaneous algebraic reconstruction technique (GSR-SART). Group-based sparse representation, which utilizes the concept of a group as the basic unit of sparse representation instead of a patch, is introduced as the image domain prio…
Regularization by denoising (RED) is a broadly applicable framework for solving inverse problems by using priors specified as denoisers. While RED has been shown to provide state-of-the-art performance in a number of applications, existing RED algorithms require exact knowledge of the measurement operator characterizing the imaging system, limiting their applicability in problems where the measurement operator has parametric uncertainties. We propose a new method, called Calibrated RED (Cal-RED), that enables joint calibration of the measurement operator along with reconstruction of the unknow…
Argonne National Laboratory（阿贡国家实验室）；Technical University of Denmark（丹麦技术大学）
Resolution level and reconstruction quality in nano-computed tomography (nano-CT) are in part limited by the stability of microscopes, because the magnitude of mechanical vibrations during scanning becomes comparable to the imaging resolution, and the ability of the samples to resist beam damage during data acquisition. In such cases, there is no incentive in recovering the sample state at different time steps like in time-resolved reconstruction methods, but instead the goal is to retrieve a single reconstruction at the highest possible spatial resolution and without any imaging artifacts. He…
In optical diffraction tomography (ODT), the three-dimensional scattering potential of a microscopic object rotating around its center is recovered by a series of illuminations with coherent light. Reconstruction algorithms such as the filtered backpropagation require knowledge of the complex-valued wave at the measurement plane, whereas often only intensities, i.e., phaseless measurements, are available in practice. We propose a new reconstruction approach for ODT with unknown phase information based on three key ingredients. First, the light propagation is modeled using Born's approximation …
