A parallel direct solution approach based on domain decomposition method (DDM) and directed acyclic graph (DAG) scheduling is outlined. Computations are represented as a sequence of small tasks that operate on domains of DDM or dense matrix blocks of a reduced matrix. These tasks can be statically scheduled for parallel execution using their DAG dependencies and weights that depend on estimates of computation and communication costs. Performance comparison with MUMPS 5.1.2 on electrically large problems suggest up to 20% better parallel efficiency, 30% less memory and slightly faster in run-time, while maintaining the same accuracy.
This paper studies the nucleus decomposition problem, which has been shown to be useful in finding dense substructures in graphs. We present a novel parallel algorithm that is efficient both in theory and in practice. Our algorithm achieves a work complexity matching the best sequential algorithm while also having low depth (parallel running time), which significantly improves upon the only existing parallel nucleus decomposition algorithm (Sariyuce et al., PVLDB 2018). The key to the theoretical efficiency of our algorithm is the use of a theoretically-efficient parallel algorithms for clique…
Currently, the size of scientific data is growing at an unprecedented rate. Data in the form of tensors exhibit high-order, high-dimensional, and highly sparse features. Although tensor-based analysis methods are very effective, the large increase in data size makes the original tensor impossible to process. Tensor decomposition decomposes a tensor into multiple low-rank matrices or tensors that can be exploited by tensor-based analysis methods. Tucker decomposition is such an algorithm, which decomposes a $n$-order tensor into $n$ low-rank factor matrices and a low-rank core tensor. However, …
We develop a distributed framework for the physics-informed neural networks (PINNs) based on two recent extensions, namely conservative PINNs (cPINNs) and extended PINNs (XPINNs), which employ domain decomposition in space and in time-space, respectively. This domain decomposition endows cPINNs and XPINNs with several advantages over the vanilla PINNs, such as parallelization capacity, large representation capacity, efficient hyperparameter tuning, and is particularly effective for multi-scale and multi-physics problems. Here, we present a parallel algorithm for cPINNs and XPINNs constructed w…
Tip decomposition is a crucial kernel for mining dense subgraphs in bipartite networks, with applications in spam detection, analysis of affiliation networks etc. It creates a hierarchy of vertex-induced subgraphs with varying densities determined by the participation of vertices in butterflies (2,2-bicliques). To build the hierarchy, existing algorithms iteratively follow a delete-update(peeling) process: deleting vertices with the minimum number of butterflies and correspondingly updating the butterfly count of their 2-hop neighbors. The need to explore 2-hop neighborhood renders tip-decompo…
Ptychography is a popular microscopic imaging modality for many scientific discoveries and sets the record for highest image resolution. Unfortunately, the high image resolution for ptychographic reconstruction requires significant amount of memory and computations, forcing many applications to compromise their image resolution in exchange for a smaller memory footprint and a shorter reconstruction time. In this paper, we propose a novel image gradient decomposition method that significantly reduces the memory footprint for ptychographic reconstruction by tessellating image gradients and diffr…
We introduce Stream-K, a work-centric parallelization of matrix multiplication (GEMM) and related computations in dense linear algebra. Whereas contemporary decompositions are primarily tile-based, our method operates by partitioning an even share of the aggregate inner loop iterations among physical processing elements. This provides a near-perfect utilization of computing resources, regardless of how efficiently the output tiling for any given problem quantizes across the underlying processing elements. On GPU processors, our Stream-K parallelization of GEMM produces a peak speedup of up to …
CP tensor decomposition with alternating least squares (ALS) is dominated in cost by the matricized-tensor times Khatri-Rao product (MTTKRP) kernel that is necessary to set up the quadratic optimization subproblems. State-of-art parallel ALS implementations use dimension trees to avoid redundant computations across MTTKRPs within each ALS sweep. In this paper, we propose two new parallel algorithms to accelerate CP-ALS. We introduce the multi-sweep dimension tree (MSDT) algorithm, which requires the contraction between an order N input tensor and the first-contracted input matrix once every (N…
Sparse Tucker Decomposition (STD) algorithms learn a core tensor and a group of factor matrices to obtain an optimal low-rank representation feature for the \underline{H}igh-\underline{O}rder, \underline{H}igh-\underline{D}imension, and \underline{S}parse \underline{T}ensor (HOHDST). However, existing STD algorithms face the problem of intermediate variables explosion which results from the fact that the formation of those variables, i.e., matrices Khatri-Rao product, Kronecker product, and matrix-matrix multiplication, follows the whole elements in sparse tensor. The above problems prevent de…
Compactly expressing large-scale datasets through Multivariate Functional Approximations (MFA) can be critically important for analysis and visualization to drive scientific discovery. Tackling such problems requires scalable data partitioning approaches to compute MFA representations in amenable wall clock times. We introduce a fully parallel scheme to reduce the total work per task in combination with an overlapping additive Schwarz-based iterative scheme to compute MFA with a tensor expansion of B-spline bases, while preserving full degree continuity across subdomain boundaries. While previ…
High-Order, High-Dimension, and Sparse Tensor (HOHDST) data originates from real industrial applications, i.e., social networks, recommender systems, bio-information, and traffic information. Sparse Tensor Decomposition (STD) can project the HOHDST data into low-rank space. In this work, a novel method for STD of Kruskal approximating the core tensor and stochastic strategy for approximating the whole gradient is proposed which comprises of the following two parts: (1) the matrization unfolding order of the Kruskal product for the core tensor follows the multiplication order of the factor matr…
Wing and Tip decomposition construct a hierarchy of butterfly-dense edge and vertex induced bipartite subgraphs, respectively. They have applications in several domains including e-commerce, recommendation systems and document analysis. Existing decomposition algorithms use a bottom-up approach that constructs the hierarchy in an increasing order of subgraph density. They iteratively peel the entities with minimum butterfly count i.e. remove them from the graph and update the butterfly count of other entities. However, the amount of butterflies in large bipartite graphs makes bottom-up peeling…
SWIFT: Using task-based parallelism, fully asynchronous communication, and graph partition-based domain decomposition for strong scaling on more than 100,000 cores
The paper presents a strategy to construct an incremental Singular Value Decomposition (SVD) for time-evolving, spatially 3D discrete data sets. A low memory access procedure for reducing and deploying the snapshot data is presented. Considered examples refer to Computational Fluid Dynamic (CFD) results extracted from unsteady flow simulations, which are computed spatially parallel using domain decomposition strategies. The framework addresses state of the art PDE-solvers dedicated to practical applications. Although the approach is applied to technical flows, it is applicable in similar appli…
