Ontologies order and interconnect knowledge of a certain field in a formal and semantic way so that they are machine-parsable. They try to define allwhere acceptable definition of concepts and objects, classify them, provide properties as well as interconnect them with relations (e.g. "A is a special case of B"). More precisely, Tom Gruber defines Ontologies as a "specification of a conceptualization; [...] a description (like a formal specification of a program) of the concepts and relationships that can exist for an agent or a community of agents." [1] An Ontology is made of Individuals which are organized in Classes. Both can have Attributes and Relations among themselves. Some complex Ontologies define Restrictions, Rules and Events which change attributes or relations. To be computer accessible they are written in certain ontology languages, like the OBO language or the more used Common Algebraic Specification Language. With the rising of a digitalized, interconnected and globalized world, where common standards have to be found, ontologies are of great interest. [2] Yet, the development of chemical ontologies is in the beginning. Indeed, some interesting basic approaches towards chemical ontologies can be found, but nevertheless they suffer from two main flaws. Firstly, we found that they are mostly only fragmentary completed or are still in an architecture state. Secondly, apparently no chemical ontology is widespread accepted. Therefore, we herein try to describe the major ontology-developments in the chemical related fields Ontologies about chemical analytical methods, Ontologies about name reactions and Ontologies about scientific units.
The article presents an overview of current specialized ontology engineering tools, as well as texts' annotation tools based on ontologies. The main functions and features of these tools, their advantages and disadvantages are discussed. A systematic comparative analysis of means for engineering ontologies is presented.
Curtin University of Technology（科廷科技大学）；University of Western Australia（西澳大学）
The need for domain ontologies in mission critical applications such as risk management and hazard identification is becoming more and more pressing. Most research on ontology learning conducted in the academia remains unrealistic for real-world applications. One of the main problems is the dependence on non-incremental, rare knowledge and textual resources, and manually-crafted patterns and rules. This paper reports work in progress aiming to address such undesirable dependencies during ontology construction. Initial experiments using a working prototype of the system revealed promising poten…
We propose a system for automated essay grading using ontologies and textual entailment. The process of textual entailment is guided by hypotheses, which are extracted from a domain ontology. Textual entailment checks if the truth of the hypothesis follows from a given text. We enact textual entailment to compare students answer to a model answer obtained from ontology. We validated the solution against various essays written by students in the chemistry domain.
Indraprastha Institute of Information Technology（因德拉普拉斯塔信息技术学院）；Inria（法国国家信息与自动化研究所）
Several domains have adopted the increasing use of IoT-based devices to collect sensor data for generating abstractions and perceptions of the real world. This sensor data is multi-modal and heterogeneous in nature. This heterogeneity induces interoperability issues while developing cross-domain applications, thereby restricting the possibility of reusing sensor data to develop new applications. As a solution to this, semantic approaches have been proposed in the literature to tackle problems related to interoperability of sensor data. Several ontologies have been proposed to handle different …
The quest for acquiring a formal representation of the knowledge of a domain of interest has attracted researchers with various backgrounds into a diverse field called ontology learning. We highlight classical machine learning and data mining approaches that have been proposed for (semi-)automating the creation of description logic (DL) ontologies. These are based on association rule mining, formal concept analysis, inductive logic programming, computational learning theory, and neural networks. We provide an overview of each approach and how it has been adapted for dealing with DL ontologies.…
Although the notion of a concept as a collection of objects sharing certain properties, and the notion of a conceptual hierarchy are fundamental to both Formal Concept Analysis and Description Logics, the ways concepts are described and obtained differ significantly between these two research areas. Despite these differences, there have been several attempts to bridge the gap between these two formalisms, and attempts to apply methods from one field in the other. The present work aims to give an overview on the research done in combining Description Logics and Formal Concept Analysis.
Université Paris 8（巴黎第八大学）；IRCAM（法国音响与音乐研究和协作学院）；CReSTIC de l’Université de Reims（兰斯大学CReSTIC研究所）
Traditional staging is based on a formal approach of similarity leaning on dramaturgical ontologies and instanciation variations. Inspired by interactive data mining, that suggests different approaches, we give an overview of computer science and theater researches using computers as partners of the actor to escape the a priori specification of roles.
Institute of Mathematics and Computer Science, University of Latvia（拉脱维亚大学数学与计算机科学研究所）
Ontologies are one of the core foundations of the Semantic Web. To participate in Semantic Web projects, domain experts need to be able to understand the ontologies involved. Visual notations can provide an overview of the ontology and help users to understand the connections among entities. However, the users first need to learn the visual notation before they can interpret it correctly. Controlled natural language representation would be readable right away and might be preferred in case of complex axioms, however, the structure of the ontology would remain less apparent. We propose to combi…
TÜBİTAK Energy Institute（土耳其科学技术研究理事会能源研究所）；Gazi University（加济大学）
Ontologies are critical sources of semantic information for many application domains. Hence, there are ontologies proposed and utilized for domains such as medicine, chemical engineering, and electrical energy. In this paper, we present an improved and extended version of a wind energy ontology previously proposed. First, the ontology is restructured to increase its understandability and coverage. Secondly, it is enriched with new concepts, crisp/fuzzy attributes, and instances to increase its usability in semantic applications regarding wind energy. The ultimate ontology is utilized within a …
Otto von Guericke University Magdeburg（马格德堡奥托·冯·格里克大学）；Free University of Bozen-Bolzano（博尔扎诺自由大学）；University College London（伦敦大学学院）
Reference ontologies provide a shared vocabulary and knowledge resource for their domain. Manual construction enables them to maintain a high quality, allowing them to be widely accepted across their community. However, the manual development process does not scale for large domains. We present a new methodology for automatic ontology extension and apply it to the ChEBI ontology, a prominent reference ontology for life sciences chemistry. We trained a Transformer-based deep learning model on the leaf node structures from the ChEBI ontology and the classes to which they belong. The model is the…
This report describes a new version of the OntoSpec methodology for ontology building. Defined by the LaRIA Knowledge Engineering Team (University of Picardie Jules Verne, Amiens, France), OntoSpec aims at helping builders to model ontological knowledge (upstream of formal representation). The methodology relies on a set of rigorously-defined modelling primitives and principles. Its application leads to the elaboration of a semi-informal ontology, which is independent of knowledge representation languages. We recently enriched the OntoSpec methodology by endowing it with a new resource, the DO…
We report development of a data infrastructure for drug repurposing that takes advantage of two currently available chemical ontologies. The data infrastructure includes a database of compound- target associations augmented with molecular ontological labels. It also contains two computational tools for prediction of new associations. We describe two drug-repurposing systems: one, Nascent Ontological Information Retrieval for Drug Repurposing (NOIR-DR), based on an information retrieval strategy, and another, based on non-negative matrix factorization together with compound similarity, that was…
Irradiation experiments (IE) are an essential step in the development of High-Energy Physics (HEP) particle accelerators and detectors. They assess the radiation hardness of materials used in HEP experimental devices by simulating, in a short time, the common long-term degradation effects due to their bombardment by high-energy particles. IEs are also used in other scientific and industrial fields such as medicine (e.g., for cancer treatment, medical imaging, etc.), space/avionics (e.g., for radiation testing of payload equipment) as well as in industry (e.g., for food sterilization). Usually …
Informatics Institute, University of Amsterdam（阿姆斯特丹大学信息学研究所）；Slovak Academy of Sciences（斯洛伐克科学院）
Several solutions for specifying normative artefacts (norms, contracts, policies) in a computational processable way have been presented in the literature. Legal core ontologies have been proposed to systematize concepts and relationships relevant to normative reasoning. However, no solution amongst those has achieved general acceptance, and no common ground (representational, computational) has been identified enabling us to easily compare them. Yet, all these efforts share the same motivation of representing normative directives, therefore it is plausible that there may be a representational…
We define a class of probabilistic models in terms of an operator algebra of stochastic processes, and a representation for this class in terms of stochastic parameterized grammars. A syntactic specification of a grammar is mapped to semantics given in terms of a ring of operators, so that grammatical composition corresponds to operator addition or multiplication. The operators are generators for the time-evolution of stochastic processes. Within this modeling framework one can express data clustering models, logic programs, ordinary and stochastic differential equations, graph grammars, and s…
University of California, Santa Barbara（加利福尼亚大学圣巴巴拉分校）；Australian National University（澳大利亚国立大学）；CSIRO（澳大利亚联邦科学与工业研究组织）；Ecole des Mines de Saint-Etienne（圣艾蒂安国立高等矿业学校）
The Sensor, Observation, Sample, and Actuator (SOSA) ontology provides a formal but lightweight general-purpose specification for modeling the interaction between the entities involved in the acts of observation, actuation, and sampling. SOSA is the result of rethinking the W3C-XG Semantic Sensor Network (SSN) ontology based on changes in scope and target audience, technical developments, and lessons learned over the past years. SOSA also acts as a replacement of SSN's Stimulus Sensor Observation (SSO) core. It has been developed by the first joint working group of the Open Geospatial Consorti…
We are interested in bridging the world of natural language and the world of the semantic web in particular to support natural multilingual access to the web of data. In this paper we introduce a new type of lexical ontology called interlingual lexical ontology (ILexicOn), which uses semantic web formalisms to make each interlingual lexical unit class (ILUc) support the projection of its semantic decomposition on itself. After a short overview of existing lexical ontologies, we briefly introduce the semantic web formalisms we use. We then present the three layered architecture of our approach:…
