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arXiv 1909.01963eess.IVcs.CVq-bio.QM

Self-Attentive Adversarial Stain Normalization

University of Virginia(弗吉尼亚大学);Aga Khan University(阿迦汗大学);University of Zambia School of Medicine(赞比亚大学医学院);Queen Mary University of London(伦敦玛丽女王大学)

Aman Shrivastava, Will Adorno, Yash Sharma, Lubaina Ehsan, S. Asad Ali, Sean R. Moore, Beatrice C. Amadi, Paul Kelly, Sana Syed, Donald E. Brown

英文摘要:

Hematoxylin and Eosin (H&E) stained Whole Slide Images (WSIs) are utilized for biopsy visualization-based diagnostic and prognostic assessment of diseases. Variation in the H&E staining process across different lab sites can lead to significant variations in biopsy image appearance. These variations introduce an undesirable bias when the slides are examined by pathologists or used for training deep learning models. To reduce this bias, slides need to be translated to a common domain of stain appearance before analysis. We propose a Self-Attentive Adversarial Stain Normalization (SAASN) approach for the normalization of multiple stain appearances to a common domain. This unsupervised generative adversarial approach includes self-attention mechanism for synthesizing images with finer detail while preserving the structural consistency of the biopsy features during translation. SAASN demonstrates consistent and superior performance compared to other popular stain normalization techniques on H&E stained duodenal biopsy image data.

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