Modularity based community detection encompasses a number of widely used, efficient heuristics for identification of structure in networks. Recently, a belief propagation approach to modularity optimization provided a useful guide for identifying non-trivial structure in single-layer networks in a way that other optimization heuristics have not. In this paper, we extend modularity belief propagation to multilayer networks. As part of this development, we also directly incorporate a resolution parameter. We show that adjusting the resolution parameter affects the convergence properties of the algorithm and yields different community structures than the baseline. We compare our approach with a widely used community detection tool, GenLouvain, across a range of synthetic, multilayer benchmark networks, demonstrating that our method performs comparably to the state of the art. Finally, we demonstrate the practical advantages of the additional information provided by our tool by way of two real-world network examples. We show how the convergence properties of the algorithm can be used in selecting the appropriate resolution and coupling parameters and how the node-level marginals provide an interpretation for the strength of attachment to the identified communities. We have released our tool as a Python package for convenient use.
The generalized version of modularity for multilayer networks, a.k.a. multislice modularity, is characterized by two model parameters, namely resolution factor and inter-layer coupling factor. The former corresponds to a notion of layer-specific relevance, whereas the inter-layer coupling factor represents the strength of node connections across the network layers. Despite the potential of this approach, the setting of both parameters can be arbitrarily selected, without considering specific characteristics from the topology of the multilayer network as well as from an available community stru…
Modularity maximization using greedy algorithms continues to be a popular approach toward community detection in graphs, even after various better forming algorithms have been proposed. Apart from its clear mechanism and ease of implementation, this approach is persistently popular because, presumably, its risk of algorithmic failure is not well understood. This Rapid Communication provides insight into this issue by estimating the algorithmic performance limit of modularity maximization. This is achieved by counting the number of metastable states under a local update rule. Our results offer …
Modularity for multilayer networks, also called multislice modularity, is parametric to a resolution factor and an inter-layer coupling factor. The former is useful to express layer-specific relevance and the latter quantifies the strength of node linkage across the layers of a network. However, such parameters can be set arbitrarily, thus discarding any structure information at graph or community level. Other issues are related to the inability of properly modeling order relations over the layers, which is required for dynamic networks. In this paper we propose a new definition of modularity …
Complex systems are usually illustrated by networks which captures the topology of the interactions between the entities. To better understand the roles played by the entities in the system one needs to uncover the underlying community structure of the system. In recent years, systems with interactions that have various types or can change over time between the entities have attracted an increasing research attention. However, algorithms aiming to solve the key problem - community detection - in multilayer networks are still limited. In this work, we first introduce the multilayer network mode…
Characterizing large-scale organization in networks, including multilayer networks, is one of the most prominent topics in network science and is important for many applications. One type of mesoscale feature is community structure, in which sets of nodes are densely connected internally but sparsely connected to other dense sets of nodes. Two of the most popular approaches for community detection are to maximize an objective function called "modularity" and to perform statistical inference using stochastic block models. Generalizing work by Newman on monolayer networks (Physical Review E 94, …
Communities are fundamental entities for the characterization of the structure of real networks. The standard approach to the identification of communities in networks is based on the optimization of a quality function known as "modularity". Although modularity has been at the center of an intense research activity and many methods for its maximization have been proposed, not much it is yet known about the necessary conditions that communities need to satisfy in order to be detectable with modularity maximization methods. Here, we develop a simple theory to establish these conditions, and we s…
Multilayer networks capture pairwise relationships between the components of complex systems across multiple modes or scales of interactions. An important meso-scale feature of these networks is measured though their community structure, which defines groups of strongly connected nodes that exist within and across network layers. Because interlayer edges can describe relationships between different modalities, scales, or time points, it is essential to understand how communities change and evolve across layers. A popular method for detecting communities in multilayer networks consists of maxim…
Many systems are naturally represented by a multilayer network in which edges exist in multiple layers that encode different, but potentially related, types of interactions, and it is important to understand limitations on the detectability of community structure in these networks. Using random matrix theory, we analyze detectability limitations for multilayer (specifically, multiplex) stochastic block models (SBMs) in which L layers are derived from a common SBM. We study the effect of layer aggregation on detectability for several aggregation methods, including summation of the layers' adjac…
We study networks that display community structure -- groups of nodes within which connections are unusually dense. Using methods from random matrix theory, we calculate the spectra of such networks in the limit of large size, and hence demonstrate the presence of a phase transition in matrix methods for community detection, such as the popular modularity maximization method. The transition separates a regime in which such methods successfully detect the community structure from one in which the structure is present but is not detected. By comparing these results with recent analyses of maximu…
We prove the existence of an asymptotic phase transition threshold on community detectability for the spectral modularity method [M. E. J. Newman, Phys. Rev. E 74, 036104 (2006) and Proc. National Academy of Sciences. 103, 8577 (2006)] under a stochastic block model. The phase transition on community detectability occurs as the inter-community edge connection probability $p$ grows. This phase transition separates a sub-critical regime of small $p$, where modularity-based community detection successfully identifies the communities, from a super-critical regime of large $p$ where successful comm…
We show that modularity maximization with the resolution parameter offers a unifying framework of graph partitioning. In this framework, we demonstrate that the spectral method exhibits universal detectability, irrespective of the value of the resolution parameter, as long as the graph is partitioned. Furthermore, we show that when the resolution parameter is sufficiently small, a first-order phase transition occurs, resulting in the graph being unpartitioned.
We have analyzed the detectability limits of network communities in the framework of the popular Girvan and Newman benchmark. By carefully taking into account the inevitable stochastic fluctuations that affect the construction of each and every instance of the benchmark, we come to the conclusions that the native, putative partition of the network is completely lost even before the in-degree/out-degree ratio becomes equal to the one of a structure-less Erdös-Rényi network. We develop a simple iterative scheme, analytically well described by an infinite branching-process, to provide an estimate…
Networks are a convenient way to represent complex systems of interacting entities. Many networks contain "communities" of nodes that are more densely connected to each other than to nodes in the rest of the network. In this paper, we investigate the detection of communities in temporal networks represented as multilayer networks. As a focal example, we study time-dependent financial-asset correlation networks. We first argue that the use of the "modularity" quality function---which is defined by comparing edge weights in an observed network to expected edge weights in a "null network"---is ap…
The clustering ensemble paradigm has emerged as an effective tool for community detection in multilayer networks, which allows for producing consensus solutions that are designed to be more robust to the algorithmic selection and configuration bias. However, one limitation is related to the dependency on a co-association threshold that controls the degree of consensus in the community structure solution. The goal of this work is to overcome this limitation with a new framework of ensemble-based multilayer community detection, which features parameter-free identification of consensus communitie…
Modularity is a popular measure of community structure. However, maximizing the modularity can lead to many competing partitions, with almost the same modularity, that are poorly correlated with each other. It can also produce illusory "communities" in random graphs where none exist. We address this problem by using the modularity as a Hamiltonian at finite temperature, and using an efficient Belief Propagation algorithm to obtain the consensus of many partitions with high modularity, rather than looking for a single partition that maximizes it. We show analytically and numerically that the pr…
We introduce the Convex Hull of Admissible Modularity Partitions (CHAMP) algorithm to prune and prioritize different network community structures identified across multiple runs of possibly various computational heuristics. Given a set of partitions, CHAMP identifies the domain of modularity optimization for each partition ---i.e., the parameter-space domain where it has the largest modularity relative to the input set---discarding partitions with empty domains to obtain the subset of partitions that are "admissible" candidate community structures that remain potentially optimal over indicated…
Applied network science often involves preprocessing network data before applying a network-analysis method, and there is typically a theoretical disconnect between these steps. For example, it is common to aggregate time-varying network data into windows prior to analysis, and the tradeoffs of this preprocessing are not well understood. Focusing on the problem of detecting small communities in multilayer networks, we study the effects of layer aggregation by developing random-matrix theory for modularity matrices associated with layer-aggregated networks with $N$ nodes and $L$ layers, which a…
A wide range of complex systems can be modeled as networks with corresponding constraints on the edges and nodes, which have been extensively studied in recent years. Nowadays, with the progress of information technology, systems that contain the information collected from multiple perspectives have been generated. The conventional models designed for single perspective networks fail to depict the diverse topological properties of such systems, so multilayer network models aiming at describing the structure of these networks emerge. As a major concern in network science, decomposing the networ…
Hypergraphs are a natural modeling paradigm for a wide range of complex relational systems. A standard analysis task is to identify clusters of closely related or densely interconnected nodes. Many graph algorithms for this task are based on variants of the stochastic blockmodel, a random graph with flexible cluster structure. However, there are few models and algorithms for hypergraph clustering. Here, we propose a Poisson degree-corrected hypergraph stochastic blockmodel (DCHSBM), a generative model of clustered hypergraphs with heterogeneous node degrees and edge sizes. Approximate maximum-…
Complex networks often have a modular structure, where a number of tightly- connected groups of nodes (modules) have relatively few interconnections. Modularity had been shown to have an important effect on the evolution and stability of biological networks, on the scalability and efficiency of large-scale infrastructure, and the development of economic and social systems. An analytical framework for understanding modularity and its effects on network vulnerability is still missing. Through recent advances in the understanding of multilayer networks, however, it is now possible to develop a th…
Multilayer and multiplex networks are becoming common network data sets in recent times. We consider the problem of identifying the common community structure for a special type of multilayer networks called multi-relational networks. We consider extensions of the spectral clustering methods for multi-relational networks and give theoretical guarantees that the spectral clustering methods recover community structure consistently for multi-relational networks generated from multilayer versions of both stochastic and degree-corrected block models even with dependence between network layers. The …
Imperial College London（帝国理工学院）；King’s College London（伦敦国王学院）
The analysis of temporal networks has a wide area of applications in a world of technological advances. An important aspect of temporal network analysis is the discovery of community structures. Real data networks are often very large and the communities are observed to have a hierarchical structure referred to as multi-scale communities. Changes in the community structure over time might take place either at one scale or across all scales of the community structure. The multilayer formulation of the modularity maximization (MM) method introduced captures the changing multi-scale community str…
