Neural coding is a key problem in neuroscience, which can promote people's understanding of the mechanism that brain processes information. Among the classical theories of neural coding, the population rate coding has been studied widely in many works. Most computational studies considered the neurons and the corresponding presynaptic synapses as pre-determined excitatory or inhibitory types. According to physiological evidence, however, that the real effect of a synapse is inhibitory or excitatory is determined by the type of the activated receptors. The co-release of excitatory and inhibitory receptors in the same synapse exists widely in the brain. In this paper, we study the population rate coding in recurrent neuronal networks with undetermined neurons and synapses, different from the traditional works, in which one neuron can perform either excitatory or inhibitory effect to the corresponding postsynaptic neurons. We find such neuronal networks can encode the stimuli information in population firing rate well. We find that intermediate recurrent probability together with moderate Inhibitory-Excitatory strength ratio can enhance the encoding performance. Suitable combinations of the previous two parameters with the noise intensity, the excitatory synaptic strength and the synaptic time constant have promoting effects on the performance of population rate coding. Finally, we compare the performance of population rate coding between the traditional (determined) model and ours, and we find that it is rational to consider the co-release of inhibitory and excitatory receptors.
This paper is an introduction to the membrane potential equation for neurons. Its properties are described, as well as sample applications. Networks of these equations can be used for modeling neuronal systems, which also process images and video sequences, respectively. Specifically, (i) a dynamic retina is proposed (based on a reaction-diffusion system), which predicts afterimages and simple visual illusions, (ii) a system for texture segregation (texture elements are understood as even-symmetric contrast features), and (iii) a network for detecting object approaches (inspired by the locust …
Since the first recordings made of evoked action potentials it has become apparent that the responses of individual neurons to ongoing physiologically relevant input, are highly variable. This variability is manifested in non-stationary behavior of practically every observable neuronal response feature. Here we introduce the Neuronal Response Clamp, a closed-loop technique enabling full control over two important single neuron activity variables: response probability and stimulus-spike latency. The technique is applicable over extended durations (up to several hours), and is effective even on …
Neuronal networks in dissociated culture combined with cell engineering technology offer a pivotal platform to constructively explore the relationship between structure and function in living neuronal networks. Here, we fabricated defined neuronal networks possessing a modular architecture on high-density microelectrode arrays (HD-MEAs), a state-of-the-art electrophysiological tool for recording neural activity with high spatial and temporal resolutions. We first established a surface coating protocol using a cell-permissive hydrogel to stably attach polydimethylsiloxane microfluidic film on t…
Here, we consider the open issue of how the energy efficiency of neural information transmission process in a general neuronal array constrains the network size, and how well this network size ensures the neural information being transmitted reliably in a noisy environment. By direct mathematical analysis, we have obtained general solutions proving that there exists an optimal neuronal number in the network with which the average coding energy cost (defined as energy consumption divided by mutual information) per neuron passes through a global minimum for both subthreshold and superthreshold s…
A classical view of neural coding relies on temporal firing synchrony among functional groups of neurons; however the underlying mechanism remains an enigma. Here we experimentally demonstrate a mechanism where time-lags among neuronal spiking leap from several tens of milliseconds to nearly zero-lag synchrony. It also allows sudden leaps out of synchrony, hence forming short epochs of synchrony. Our results are based on an experimental procedure where conditioned stimulations were enforced on circuits of neurons embedded within a large-scale network of cortical cells in vitro and are corrobor…
Recent developments in the interfacing of neurons with silicon chips may pave the way for progress in constructing scalable neurocomputers. The assembly of synthetic neuronal networks with predefined synaptic connections and controlled geometric structure has been realized experimentally within the last decade. Furthermore, when such neuronal networks are interfaced with semiconductors, action potentials in neurons of the network can be elicited by capacitative stimulators, and voltage measurements can be made by transistors incorporated into the associated silicon chip. Despite the impressive…
Sequences of neuronal activation have long been implicated in a variety of brain functions. In particular, these sequences have been tied to memory formation and spatial navigation in the hippocampus, a region of mammalian brains. Traditionally, neuronal sequences have been interpreted as noisy manifestations of neuronal templates (i.e., orderings), ignoring much richer structure contained in the sequences. This paper introduces a new tool for understanding neuronal sequences: the bias matrix. The bias matrix captures the probabilistic tendency of each neuron to fire before or after each other…
Mounting evidence in neuroscience suggests the possibility of neuronal representations that individual neurons serve as the substrates of different mental representations in a point-to-point way. Combined with associationism, it can potentially address a range of theoretical problems and provide a straightforward explanation for our cognition. However, this idea is merely a hypothesis with many questions unsolved. In this paper, I will bring up a new framework to defend the idea of neuronal representations. The strategy is from micro- to macro-level. Specifically, in the micro-level, I first p…
Avalanches with power-law distributed size parameters have been observed in neuronal networks. This observation might be a manifestation of the self-organized criticality (SOC). Yet, the physiological mechanicsm of this behavior is currently unknown. Describing synaptic noise as transmission failures mainly originating from the probabilistic nature of neurotransmitter release, this study investigates the potential of this noise as a mechanism for driving the functional architecture of the neuronal networks towards SOC. To this end, a simple finite state neuron model, with activity dependent an…
Neuronal network dynamics depends on network structure. In this paper we study how network topology underpins the emergence of different dynamical behaviors in neuronal networks. In particular, we consider neuronal network dynamics on Erdős-Rényi (ER) networks, regular random (RR) networks, ring lattices, and all-to-all networks. We solve analytically a neuronal network model with stochastic binary-state neurons in all the network topologies, except ring lattices. Given that apart from network structure, all four models are equivalent, this allows us to understand the role of network structure…
The neuronal paradigm of studying the brain has left us with limitations in both our understanding of how neurons process information to achieve biological intelligence and how such knowledge may be translated into artificial intelligence and its most brain-derived branch, neuromorphic computing. Overturning our fundamental assumptions of how the brain works, the recent exploration of astrocytes is revealing that these long-neglected brain cells dynamically regulate learning by interacting with neuronal activity at the synaptic level. Following recent experimental evidence, we designed an asso…
Nowadays, it is possible to record the activity of hundreds of cells at the same time in behaving animals. However, these data are often treated and analyzed as if they consisted of many independently recorded neurons. How can neuronal populations be uniquely used to learn about cognition? We describe recent work that shows that populations of simultaneously recorded neurons are fundamental to understand the basis of decision-making, including processes such as ongoing deliberations and decision confidence, which generally fall outside the reach of single-cell analysis. Thus, neuronal populati…
Identify the directions of signal flows in neural networks is one of the most important stages for understanding the intricate information dynamics of a living brain. Using a dataset of 213 projection neurons distributed in different regions of Drosophila brain, we develop a powerful machine learning algorithm: node-based polarity identifier of neurons (NPIN). The proposed model is trained by nodal information only and includes both Soma Features (which contain spatial information from a given node to a soma) and Local Features (which contain morphological information of a given node). After i…
The importance of self-feedback autaptic transmission in modulating spike-time irregularity is still poorly understood. By using a biophysical model that incorporates autaptic coupling, we here show that self-innervation of neurons participates in the modulation of irregular neuronal firing, primarily by regulating the occurrence frequency of burst firing. In particular, we find that both excitatory and electrical autapses increase the occurrence of burst firing, thus reducing neuronal firing regularity. In contrast, inhibitory autapses suppress burst firing and therefore tend to improve the r…
Recording simultaneous activity of hundreds of neurons is now possible. Existing methods can model such population activity, but do not directly reveal the computations used by the brain. We present a fully unsupervised method that models neuronal activity and reveals the computational strategy. The method constructs a topological model of neuronal dynamics consisting of interconnected loops. Transitions between loops mark computationally-salient decisions. We accurately model activation of 100s of neurons in the primate cortex during a working memory task. Dynamics of a recurrent neural netwo…
Neuronal excitability is known to be affected by transcranial electrical stimulation. However, due to the existence of both excitatory and inhibitory neurons in the cortex, the mechanism of neuronal excitability shift is still not clear. Here, we study electrical stimulation disturbance on neuronal excitability in the neuromuscular system on an acute rat model. We design a special stimulation waveform of enveloped high frequency stimulation (EHFS). With modeling and in vivo measurements, EHFS is confirmed to synchronize the neuronal recruitment at the positive and negative electrode. This uniq…
Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of neuron shape on the overall connectivity and dynamics of the emerging networks. The current work addresses this issue by considering simplified neuronal shapes consisting of circular regions (soma/axons) with spokes (dendrites). Networks are grown by placing these patterns randomly in the 2D plane and establishing connections whenever a piece of dendrite falls in…
Neuron is the most important building block in our brain, and information processing in individual neuron involves the transformation of input synaptic spike trains into an appropriate output spike train. Hardware implementation of neuron by individual ionic/electronic coupled device is of great importance for enhancing our understanding of the brain and solving sensory processing and complex recognition tasks. Here, we provide a proof-of-principle artificial neuron with multiple presynaptic inputs and one modulatory terminal based on a proton-coupled oxide-based electric-double-layer transist…
In this work, we report the preliminary analysis of the electrophysiological behavior of in vitro neuronal networks to identify when the networks are in a critical state based on the size distribution of network-wide avalanches of activity. The results presented here demonstrate the importance of selecting appropriate parameters in the evaluation of the size distribution and indicate that it is possible to perturb networks showing highly synchronized---or supercritical---behavior into the critical state by increasing the level of inhibition in the network. The classification of critical versus…
Neurons generate magnetic fields which can be recorded with macroscopic techniques such as magneto-encephalography. The theory that accounts for the genesis of neuronal magnetic fields involves dendritic cable structures in homogeneous resistive extracellular media. Here, we generalize this model by considering dendritic cables in extracellular media with arbitrarily complex electric properties. This method is based on a multi-scale mean-field theory where the neuron is considered in interaction with a "mean" extracellular medium (characterized by a specific impedance). We first show that, as …
Numerous studies have shown that neuronal responses are modulated by stimulus properties, and also by the state of the local network. However, little is known about how activity fluctuations of neuronal populations modulate the sensory tuning of cells and affect their encoded information. We found that fluctuations in ongoing and stimulus-evoked population activity in primate visual cortex modulate the tuning of neurons in a multiplicative and additive manner. While distributed on a continuum, neurons with stronger multiplicative effects tended to have less additive modulation, and vice versa.…
Neuronal firing activities have attracted a lot of attention since a large population of spatiotemporal patterns in the brain is the basis for adaptive behavior and can also reveal the signs for various neurological disorders including Alzheimer's, schizophrenia, epilepsy and others. Here, we study the dynamics of a simple neuronal network using different sets of settings on a neuromorphic chip. We observed three different types of collective neuronal firing activities, which agree with the clinical data taken from the brain. We constructed a brain phase diagram and showed that within the weak…
We describe the operation of a neuronal device which embodies the computational principles of the `paper-and-pencil' machine envisioned by Alan Turing. The network is based on principles of cortical organization. We develop a plausible solution to implement pointers and investigate how neuronal circuits may instantiate the basic operations involved in assigning a value to a variable (i.e., x=5), in determining whether two variables have the same value and in retrieving the value of a given variable to be accessible to other nodes of the network. We exemplify the collective function of the netw…
Neurons in the central nervous system are affected by complex and noisy signals due to fluctuations in their cellular environment and in the inputs they receive from many other cells 1,2. Such noise usually increases the probability that a neuron will send out a signal to its target cells 2-5. In stochastic resonance, which occurs in many physical and biological systems, an optimal response is found at a particular noise amplitude 6-9. We have found that in a classical neuronal model the opposite can occur - that noise can subdue or turn off repetitive neuronal activity in both single cells an…
Networks of excitatory and inhibitory neurons display asynchronous irregular (AI) states, where the activities of the two populations are balanced. At the single cell level, it was shown that neurons subject to balanced and noisy synaptic inputs can display enhanced responsiveness. We show here that this enhanced responsiveness is also present at the network level, but only when single neurons are in a conductance state and fluctuation regime consistent with experimental measurements. In such states, the entire population of neurons is globally influenced by the external input. We suggest that…
We propose a new experimentally corroborated paradigm in which the functionality of the brain's logic-gates depends on the history of their activity, e.g. an OR-gate that turns into a XOR-gate over time. Our results are based on an experimental procedure where conditioned stimulations were enforced on circuits of neurons embedded within a large-scale network of cortical cells in-vitro. The underlying biological mechanism is the unavoidable increase of neuronal response latency to ongoing stimulations, which imposes a non-uniform gradual stretching of network delays.
We propose a neuronal network model which undergoes a saddle-node bifurcation on an invariant circle as the mechanism of the transition from the interictal to the ictal (seizure) state. In the vicinity of this transition, the model captures important dynamical features of both interictal and ictal states. We study the nature of interictal spikes and early warnings of the transition predicted by this model. We further demonstrate that recurrent seizures emerge due to the interaction between two networks.
Correlation-based Hebbian plasticity is thought to shape neuronal connectivity during development and learning, whereas homeostatic plasticity would stabilize network activity. Here we investigate another, new aspect of this dichotomy: Can Hebbian associative properties also emerge as a network effect from a plasticity rule based on homeostatic principles on the neuronal level? To address this question, we simulated a recurrent network of leaky integrate-and-fire neurons, in which excitatory connections are subject to a structural plasticity rule based on firing rate homeostasis. We show that …
The present work shows that the maximum-entropy method can be applied to a sample of neuronal recordings along two different routes: (1) apply to the sample; or (2) apply to a larger, unsampled neuronal population from which the sample is drawn, and then marginalize to the sample. These two routes give inequivalent results. The second route can be further generalized to the case where the size of the larger population is unknown. Which route should be chosen? Some arguments are presented in favour of the second. This work also presents and discusses probability formulae that relate states of k…
The connectome is a wiring diagram mapping all the neural connections in the brain. At the cellular level, it provides a map of the neurons and synapses within a part or all of the brain of an organism. In recent years, significant advances have been made in the study of the connectome via network science and graph theory. This analysis is fundamental to understand neurotransmission (fast synaptic transmission) networks. However, neurons use other forms of communication as neuromodulation that, instead of conveying excitation or inhibition, change neuronal and synaptic properties. This additio…
Epileptic seizures are characterised by abnormal brain dynamics at multiple scales, engaging single neurons, neuronal ensembles and coarse brain regions. Key to understanding the cause of such emergent population dynamics, is capturing the collective behaviour of neuronal activity at multiple brain scales. In this thesis I make use of the larval zebrafish to capture single cell neuronal activity across the whole brain during epileptic seizures. Firstly, I make use of statistical physics methods to quantify the collective behaviour of single neuron dynamics during epileptic seizures. Here, I de…
Recordings of whole brain activity with single neuron resolution are now feasible in simple organisms. Yet, it is still challenging to appropriately simplify such complex, noisy, and multivariate data in order to reveal general principles of nervous system function. Here, we develop a method that allows us to extract global brain dynamics from pan-neuronal imaging. Success of this method is rooted in a surprising mathematical connection between dimensionality reduction and a general class of thermodynamic systems. Application of this theoretical framework to the nervous system of C. elegans re…
In this article we present a biologically inspired model of activation of memory items in a sequence. Our model produces two types of sequences, corresponding to two different types of cerebral functions: activation of regular or irregular sequences. The switch between the two types of activation occurs through the modulation of biological parameters, without altering the connectivity matrix. Some of the parameters included in our model are neuronal gain, strength of inhibition, synaptic depression and noise. We investigate how these parameters enable the existence of sequences and influence t…
We study the characteristics of weak signal detection by a recurrent neuronal network with plastic synaptic coupling. It is shown that in the presence of an asynchronous component in synaptic transmission, the network acquires selectivity with respect to the frequency of weak periodic stimuli. For non-periodic frequency-modulated stimuli, the response is quantified by the mutual information between input (signal) and output (network's activity), and is optimized by synaptic depression. Introducing correlations in signal structure resulted in the decrease of input-output mutual information. Our…
We investigate the synchronization properties between two excitatory coupled neurons in the presence of an inhibitory loop mediated by an interneuron. Dynamical inhibition together with noise independently applied to each neuron provide phase diversity in the dynamics of the neuronal motif. We show that the interplay between the coupling strengths and external noise controls the phase relations between the neurons in a counter-intuitive way. For a master-slave configuration (unidirectional coupling) we find that the slave can anticipate the master, on average, if the slave is subject to the in…
We propose a data-driven approach to represent neuronal network dynamics as a Probabilistic Graphical Model (PGM). Our approach learns the PGM structure by employing dimension reduction to network response dynamics evoked by stimuli applied to each neuron separately. The outcome model captures how stimuli propagate through the network and thus represents functional dependencies between neurons, i.e., functional connectome. The benefit of using a PGM as the functional connectome is that posterior inference can be done efficiently and circumvent the complexities in direct inference of response p…
Despite recent interest in reconstructing neuronal networks, complete wiring diagrams on the level of individual synapses remain scarce and the insights into function they can provide remain unclear. Even for Caenorhabditis elegans, whose neuronal network is relatively small and stereotypical from animal to animal, published wiring diagrams are neither accurate nor complete and self-consistent. Using materials from White et al. and new electron micrographs we assemble whole, self-consistent gap junction and chemical synapse networks of hermaphrodite C. elegans. We propose a method to visualize…
The balance between excitation and inhibition is crucial for neuronal computation. It is observed that the balanced state of neuronal networks exists in many experiments, yet its underlying mechanism remains to be fully clarified. Theoretical studies of the balanced state mainly focus on the analysis of the homogeneous Erd$\ddot{\text{o}}$s-Rényi network. However, neuronal networks have been found to be inhomogeneous in many cortical areas. In particular, the connectivity of neuronal networks can be of the type of scale-free, small-world, or even with specific motifs. In this work, we examine …
Neuronal avalanches measured in vitro and in vivo in different cortical networks consistently exhibit power law behaviour for the size and duration distributions with exponents typical for a mean field self-organized branching process. These exponents are also recovered in neuronal network simulations implementing various neuronal dynamics on different network topologies. They can therefore be considered a very robust feature of spontaneous neuronal activity. Interestingly, this scaling behaviour is also observed on regular lattices in finite dimensions, which raises the question about the ori…
We study the time delay in the synaptic conductance for suppression of spike synchronisation in a random network of Hodgkin Huxley neurons coupled by means of chemical synapses. In the first part, we examine in detail how the time delay acts over the network during the synchronised and desynchronised neuronal activities. We observe a relation between the neuronal dynamics and the syaptic conductance distributions. We find parameter values in which the time delay has high effectiveness in promoting the suppression of spike synchronisation. In the second part, we analyse how the delayed neuronal…
Neuronal avalanche is a spontaneous neuronal activity which obeys a power-law distribution of population event sizes with an exponent of -3/2. It has been observed in the superficial layers of cortex both \emph{in vivo} and \emph{in vitro}. In this paper we analyze the information transmission of a novel self-organized neural network with active-neuron-dominant structure. Neuronal avalanches can be observed in this network with appropriate input intensity. We find that the process of network learning via spike-timing dependent plasticity dramatically increases the complexity of network structu…
One step in the conventional analysis of extracellularly recorded neuronal data is spike sorting, which separates electrical signal into action potentials from different neurons. Because spike sorting involves human judgment, it can be subjective and time intensive, particularly for large sets of neurons. Here we propose a simple, automated way to construct alternative representations of neuronal activity, called spectral representation (SR). In this approach, neuronal spikes are mapped to a discrete space of spike- waveform features and time. Spectral representation enables us to find single-…
We study a system of interacting renewal processes which is a model for neuronal activity. We show that the system possesses an exponentially large number (with respect to the number of neurons in the network) of limiting configurations of the "firing neurons". These we call patterns. Furthermore, under certain conditions of symmetry we find an algorithm to control limiting patterns by means of the connection parameters.
We establish a general linear response relation for spiking neuronal networks, based on chains with unbounded memory. This relation allows us to predict the influence of a weak amplitude time-dependent external stimuli on spatio-temporal spike correlations, from the spontaneous statistics (without stimulus) in a general context where the memory in spike dynamics can extend arbitrarily far in the past. Using this approach, we show how linear response is explicitly related to neuronal dynamics with an example, the gIF model, introduced by M. Rudolph and A. Destexhe. This example illustrates the …
We use a biophysical model of a local neuronal circuit to study the implications of synaptic plasticity for the detection of weak sensory stimuli. Networks with fast plastic coupling show behavior consistent with stochastic resonance. Addition of an additional slow coupling that accounts for the asynchronous release of neurotransmitter results in qualitatively different properties of signal detection, and also leads to the appearance of transient post-stimulus bistability. Our results suggest testable hypothesis with regard to the self-organization and dynamics of local neuronal circuits.
Several experiments and models have highlighted the importance of neuronal heterogeneity in brain dynamics and function. However, how such a cell-to-cell diversity can affect cortical computation, synchronization, and neuronal communication is still under debate. Previous studies have focused on the effect of neuronal heterogeneity in one neuronal population. Here we are specifically interested in the effect of neuronal variability on the phase relations between two populations, which can be related to different cortical communication hypotheses. It has been recently shown that two spiking neu…
There is growing evidence in favour of the temporal-coding hypothesis that temporal correlation of neuronal discharges may serve to bind distributed neuronal activity into unique representations and, in particular, that $θ$ (3.5-7.5 Hz) and $δ$ ($0.5<$3.5 Hz) oscillations facilitate information coding. The $θ$ and $δ$ rhythms are shown to be involved in various sleep stages, and during anæsthesia, and they undergo changes with the depth of anæsthesia. We introduce a thalamocortical model of interacting neuronal ensembles to describe phase relationships between $θ$ and $δ$ oscillations, especia…
Realizations of low firing rates in neural networks usually require globally balanced distributions among excitatory and inhibitory links, while feasibility of temporal coding is limited by neuronal millisecond precision. We show that cooperation, governing global network features, emerges through nodal properties, as opposed to link distributions. Using in vitro and in vivo experiments we demonstrate microsecond precision of neuronal response timings under low stimulation frequencies, whereas moderate frequencies result in a chaotic neuronal phase characterized by degraded precision. Above a …
The topological morphology descriptor of a neuron is a multiset of intervals associated to the shape of the neuron represented as a tree. In practice, topological morphology descriptors are vectorized using persistence images, which can help classify and characterize the morphology of broad groups of neurons. We study the stability of topological morphology descriptors under small changes to neuronal morphology. We show that the persistence diagram arising from the topological morphology descriptor of a neuron is stable for the 1-Wasserstein distance against a range of perturbations to the tre…
In this correspondence information theoretical tools are used to investigate the statistical properties of modeled cochlear nucleus globular bushy cell spike trains. The firing patterns are obtained from a simulation software that generates sample spike trains from any auditory input. Here we analyze for the first time the responses of globular bushy cells to voiced and unvoiced speech sounds. Classical entropy estimates, such as the direct method, are improved upon by considering a time-varying and time-dependent entropy estimate. With this method we investigated the relationship between the …
We review two examples where the linear response of a neuronal network submitted to an external stimulus can be derived explicitely, including network parameters dependence. This is done in a statistical physics-like approach where one associates to the spontaneous dynamics of the model a natural notion of Gibbs distribution inherited from ergodic theory or stochastic processes. These two examples are the Amari-Wilson-Cowan model and a conductance based Integrate and Fire model.
The behaviour of neurons under the influence of periodic external input has been modelled very successfully by circle maps. The aim of this note is to extend certain aspects of this analysis to a much more general class of forcing processes. We apply results on the fibred rotation number of randomly forced circle maps to show the uniqueness of the asymptotic firing frequency of ergodically forced pacemaker neurons. The details of the analysis are carried out for the forced leaky integrate-and-fire model, but the results should also remain valid for a large class of further models.
Quantification of neuronal correlations in neuron populations helps us to understand neural coding rules. Such quantification could also reveal how neurons encode information in normal and disease conditions like Alzheimer's and Parkinson's. While neurons communicate with each other by transmitting spikes, there would be a change in calcium concentration within the neurons inherently. Accordingly, there would be correlations in calcium spike trains and they could have heterogeneous memory structures. In this context, estimation of mutual information rate in calcium spike trains assumes primary…
The paper studies the excitability properties of a generalized FitzHugh-Nagumo model. The model differs from the purely competitive FitzHugh-Nagumo model in that it accounts for the effect of cooperative gating variables such as activation of calcium currents. Excitability is explored by unfolding a pitchfork bifurcation that is shown to organize five different types of excitability. In addition to the three classical types of neuronal excitability, two novel types are described and distinctly associated to the presence of cooperative variables.
Neurons convert the external stimuli into action potentials, or spikes, and encode the contained information into the biological nerve system. Despite the complexity of neurons and the synaptic interactions in between, the rate models are often adapted to describe neural encoding with modest success. However, it is not clear whether the firing rate, the reciprocal of the time interval between spikes, is sufficient to capture the essential feature for the neuronal dynamics. Going beyond the usual relaxation dynamics in Ginzburg-Landau theory for statistical systems, we propose the neural activi…
Neuronal networks are controlled by a combination of the dynamics of individual neurons and the connectivity of the network that links them together. We study a minimal model of the preBotzinger complex, a small neuronal network that controls the breathing rhythm of mammals through periodic firing bursts. We show that the properties of a such a randomly connected network of identical excitatory neurons are fundamentally different from those of uniformly connected neuronal networks as described by mean-field theory. We show that (i) the connectivity properties of the networks determines the loc…
Neuronal dynamics are fundamentally constrained by the underlying structural network architecture, yet much of the details of this synaptic connectivity are still unknown even in neuronal cultures in vitro. Here we extend a previous approach based on information theory, the Generalized Transfer Entropy, to the reconstruction of connectivity of simulated neuronal networks of both excitatory and inhibitory neurons. We show that, due to the model-free nature of the developed measure, both kinds of connections can be reliably inferred if the average firing rate between synchronous burst events exc…
