Motivated by the need of the linking records across various databases, we propose a novel graphical model based classifier that uses a mixture of Poisson distributions with latent variables. The idea is to derive insight into each pair of hypothesis records that match by inferring its underlying latent rate of error using Bayesian Modeling techniques. The novel approach of using gamma priors for learning the latent variables along with supervised labels is unique and allows for active learning. The naive assumption is made deliberately as to the independence of the fields to propose a generalized theory for this class of problems and not to undermine the hierarchical dependencies that could be present in different scenarios. This classifier is able to work with sparse and streaming data. The application to record linkage is able to meet several challenges of sparsity, data streams and varying nature of the data-sets.
Record linkage involves merging records in large, noisy databases to remove duplicate entities. It has become an important area because of its widespread occurrence in bibliometrics, public health, official statistics production, political science, and beyond. Traditional linkage methods directly linking records to one another are computationally infeasible as the number of records grows. As a result, it is increasingly common for researchers to treat record linkage as a clustering task, in which each latent entity is associated with one or more noisy database records. We critically assess per…
Record linkage (de-duplication or entity resolution) is the process of merging noisy databases to remove duplicate entities. While record linkage removes duplicate entities from such databases, the downstream task is any inferential, predictive, or post-linkage task on the linked data. One goal of the downstream task is obtaining a larger reference data set, allowing one to perform more accurate statistical analyses. In addition, there is inherent record linkage uncertainty passed to the downstream task. Motivated by the above, we propose a generalized Bayesian record linkage method and consid…
We propose a novel unsupervised approach for linking records across arbitrarily many files, while simultaneously detecting duplicate records within files. Our key innovation is to represent the pattern of links between records as a {\em bipartite} graph, in which records are directly linked to latent true individuals, and only indirectly linked to other records. This flexible new representation of the linkage structure naturally allows us to estimate the attributes of the unique observable people in the population, calculate $k$-way posterior probabilities of matches across records, and propag…
Understanding the association between injury severity and patients' potential for recovery is crucial to providing better care for patients with traumatic brain injury (TBI). Estimation of this relationship requires clinical information on injury severity, patient demographics, and healthcare utilization, which are often obtained from separate data sources. Because of privacy and confidentiality regulations, these data sources do not include unique identifiers to link records across data sources. Record linkage is a process to identify records that represent the same entity across data sources…
We propose an unsupervised approach for linking records across arbitrarily many files, while simultaneously detecting duplicate records within files. Our key innovation involves the representation of the pattern of links between records as a bipartite graph, in which records are directly linked to latent true individuals, and only indirectly linked to other records. This flexible representation of the linkage structure naturally allows us to estimate the attributes of the unique observable people in the population, calculate transitive linkage probabilities across records (and represent this v…
Multiple-systems or capture-recapture estimation are common techniques for population size estimation, particularly in the quantitative study of human rights violations. These methods rely on multiple samples from the population, along with the information of which individuals appear in which samples. The goal of record linkage techniques is to identify unique individuals across samples based on the information collected on them. Linkage decisions are subject to uncertainty when such information contains errors and missingness, and when different individuals have very similar characteristics. …
The bipartite record linkage task consists of merging two disparate datafiles containing information on two overlapping sets of entities. This is non-trivial in the absence of unique identifiers and it is important for a wide variety of applications given that it needs to be solved whenever we have to combine information from different sources. Most statistical techniques currently used for record linkage are derived from a seminal paper by Fellegi and Sunter (1969). These techniques usually assume independence in the matching statuses of record pairs to derive estimation procedures and optima…
Probabilistic record linkage (PRL) is the process of determining which records in two databases correspond to the same underlying entity in the absence of a unique identifier. Bayesian solutions to this problem provide a powerful mechanism for propagating uncertainty due to uncertain links between records (via the posterior distribution). However, computational considerations severely limit the practical applicability of existing Bayesian approaches. We propose a new computational approach, providing both a fast algorithm for deriving point estimates of the linkage structure that properly acco…
We present a probabilistic method for linking multiple datafiles. This task is not trivial in the absence of unique identifiers for the individuals recorded. This is a common scenario when linking census data to coverage measurement surveys for census coverage evaluation, and in general when multiple record-systems need to be integrated for posterior analysis. Our method generalizes the Fellegi-Sunter theory for linking records from two datafiles and its modern implementations. The multiple record linkage goal is to classify the record K-tuples coming from K datafiles according to the differen…
In this paper we introduce a novel Bayesian approach for linking multiple social networks in order to discover the same real world person having different accounts across networks. In particular, we develop a latent model that allow us to jointly characterize the network and linkage structures relying in both relational and profile data. In contrast to other existing approaches in the machine learning literature, our Bayesian implementation naturally provides uncertainty quantification via posterior probabilities for the linkage structure itself or any function of it. Our findings clearly sugg…
We propose and illustrate a hierarchical Bayesian approach for matching statistical records observed on different occasions. We show how this model can be profitably adopted both in record linkage problems and in capture--recapture setups, where the size of a finite population is the real object of interest. There are at least two important differences between the proposed model-based approach and the current practice in record linkage. First, the statistical model is built up on the actually observed categorical variables and no reduction (to 0--1 comparisons) of the available information tak…
In record linkage (RL), or exact file matching, the goal is to identify the links between entities with information on two or more files. RL is an important activity in areas including counting the population, enhancing survey frames and data, and conducting epidemiological and follow-up studies. RL is challenging when files are very large, no accurate personal identification (ID) number is present on all files for all units, and some information is recorded with error. Without an unique ID number one must rely on comparisons of names, addresses, dates, and other information to find the links.…
Merging datafiles containing information on overlapping sets of entities is a challenging task in the absence of unique identifiers, and is further complicated when some entities are duplicated in the datafiles. Most approaches to this problem have focused on linking two files assumed to be free of duplicates, or on detecting which records in a single file are duplicates. However, it is common in practice to encounter scenarios that fit somewhere in between or beyond these two settings. We propose a Bayesian approach for the general setting of multifile record linkage and duplicate detection. …
There has been substantial recent interest in record linkage, attempting to group the records pertaining to the same entities from a large database lacking unique identifiers. This can be viewed as a type of "microclustering," with few observations per cluster and a very large number of clusters. A variety of methods have been proposed, but there is a lack of literature providing theoretical guarantees on performance. We show that the problem is fundamentally hard from a theoretical perspective, and even in idealized cases, accurate entity resolution is effectively impossible when the number o…
University of California, Berkeley（加利福尼亚大学伯克利分校）；Centers for Disease Control and Prevention（疾病预防控制中心）；Emory University（埃默里大学）；University of Florida（佛罗里达大学）
Approximate string-matching methods to account for complex variation in highly discriminatory text fields, such as personal names, can enhance probabilistic record linkage. However, discriminating between matching and non-matching strings is challenging for logographic scripts, where similarities in pronunciation, appearance, or keystroke sequence are not directly encoded in the string data. We leverage a large Chinese administrative dataset with known match status to develop logistic regression and Xgboost classifiers integrating measures of visual, phonetic, and keystroke similarity to enhan…
Researchers are often interested in linking individuals between two datasets that lack a common unique identifier. Matching procedures often struggle to match records with common names, birthplaces or other field values. Computational feasibility is also a challenge, particularly when linking large datasets. We develop a Bayesian method for automated probabilistic record linkage and show it recovers more than 50% more true matches, holding accuracy constant, than comparable methods in a matching of military recruitment data to the 1900 US Census for which expert-labelled matches are available.…
Probabilistic record linkage (PRL) is the process of determining which records in two databases correspond to the same underlying entity in the absence of a unique identifier. Bayesian solutions to this problem provide a powerful mechanism for propagating uncertainty due to uncertain links between records (via the posterior distribution). However, computational considerations severely limit the practical applicability of existing Bayesian approaches. We propose a new computational approach, providing both a fast algorithm for deriving point estimates of the linkage structure that properly acco…
Existing file linkage methods may produce sub-optimal results because they consider neither the interactions between different pairs of matched records nor relationships between variables that are exclusive to one of the files. In addition, many of the current methods fail to address the uncertainty in the linkage, which may result in overly precise estimates of relationships between variables that are exclusive to one of the files. Bayesian methods for record linkage can reduce the bias in the estimation of scientific relationships of interest and provide interval estimates that account for t…
Entity resolution (record linkage or deduplication) is the process of identifying and linking duplicate records in databases. In this paper, we propose a Bayesian graphical approach for entity resolution that links records to latent entities, where the prior representation on the linkage structure is exchangeable. First, we adopt a flexible and tractable set of priors for the linkage structure, which corresponds to a special class of random partition models. Second, we propose a more realistic distortion model for categorical/discrete record attributes, which corrects a logical inconsistency w…
In Official Statistics, interest for data integration has been increasingly growing, due to the need of extracting information from different sources. However, the effects of these procedures on the validity of the resulting statistical analyses has been disregarded for a long time. In recent years, it has been largely recognized that linkage is not an error-free procedure and linkage errors, as false links and/or missed links, can invalidate the reliability of estimates in standard statistical models. In this paper we consider the general problem of making inference using data that have been …
University of Camerino（卡梅里诺大学）；Sapienza University of Rome（罗马大学）；Italian National Institute of Statistics（意大利国家统计局）
In this short paper, the Electre Tri-Machine Learning Method, generally used to solve ordinal classification problems, is proposed for solving the Record Linkage problem. Preliminary experimental results show that, using the Electre Tri method, high accuracy can be achieved and more than 99% of the matches and nonmatches were correctly identified by the procedure.
University of Melbourne（墨尔本大学）；Colorado State University（科罗拉多州立大学）；Australian Bureau of Statistics（澳大利亚统计局）；Duke University（杜克大学）；United States Census Bureau（美国人口普查局）
Entity resolution (ER; also known as record linkage or de-duplication) is the process of merging noisy databases, often in the absence of unique identifiers. A major advancement in ER methodology has been the application of Bayesian generative models, which provide a natural framework for inferring latent entities with rigorous quantification of uncertainty. Despite these advantages, existing models are severely limited in practice, as standard inference algorithms scale quadratically in the number of records. While scaling can be managed by fitting the model on separate blocks of the data, su…
The task of matching co-referent records is known among other names as rocord linkage. For large record-linkage problems, often there is little or no labeled data available, but unlabeled data shows a reasonable clear structure. For such problems, unsupervised or semi-supervised methods are preferable to supervised methods. In this paper, we describe a hierarchical graphical model framework for the linakge-problem in an unsupervised setting. In addition to proposing new methods, we also cast existing unsupervised probabilistic record-linkage methods in this framework. Some of the techniques we…
In this paper, we study the impact of combining profile and network data in a de-duplication setting. We also assess the influence of a range of prior distributions on the linkage structure. Furthermore, we explore stochastic gradient Hamiltonian Monte Carlo methods as a faster alternative to obtain samples from the posterior distribution for network parameters. Our methodology is evaluated using the RLdata500 data, which is a popular dataset in the record linkage literature.
Commonwealth Science and Industrial Research Organisation (CSIRO)（联邦科学与工业研究组织（CSIRO））；Macquarie University（麦考瑞大学）
Deep learning-based linkage of records across different databases is becoming increasingly useful in data integration and mining applications to discover new insights from multiple sources of data. However, due to privacy and confidentiality concerns, organisations often are not willing or allowed to share their sensitive data with any external parties, thus making it challenging to build/train deep learning models for record linkage across different organizations' databases. To overcome this limitation, we propose the first deep learning-based multi-party privacy-preserving record linkage (PP…
Multi-modal Record Linkage is the process of matching multi-modal records from multiple sources that represent the same entity. This field has not been explored in research and we propose two solutions based on Deep Learning architectures that are inspired by recent work in Visual Question Answering. The neural networks we propose use two different fusion modules, the Recurrent Neural Network + Convolutional Neural Network fusion module and the Stacked Attention Network fusion module, that jointly combine the visual and the textual data of the records. The output of these fusion models is the …
Microsoft Research（微软研究院）；Twitter, Inc.（推特公司）；University of Melbourne（墨尔本大学）；Trōv
This paper explores combinatorial optimization for problems of max-weight graph matching on multi-partite graphs, which arise in integrating multiple data sources. Entity resolution-the data integration problem of performing noisy joins on structured data-typically proceeds by first hashing each record into zero or more blocks, scoring pairs of records that are co-blocked for similarity, and then matching pairs of sufficient similarity. In the most common case of matching two sources, it is often desirable for the final matching to be one-to-one (a record may be matched with at most one other)…
Investigation of species abundance has become a vital component of many ecological monitoring studies. The primary objective of these studies is to understand how specific species are distributed across the study domain, as well as quantification of the sampling efficiency for detecting these species. To achieve these goals, preselected locations are sampled during scheduled visits, in which the number of species observed at each location is recorded. This results in spatially referenced replicated count data that are often unbalanced in structure and exhibit overdispersion. Motivated by the B…
Colorado State University（科罗拉多州立大学）；University of Florida（佛罗里达大学）；Duke University（杜克大学）
Entity resolution (ER), comprising record linkage and de-duplication, is the process of merging noisy databases in the absence of unique identifiers to remove duplicate entities. One major challenge of analysis with linked data is identifying a representative record among determined matches to pass to an inferential or predictive task, referred to as the \emph{downstream task}. Additionally, incorporating uncertainty from ER in the downstream task is critical to ensure proper inference. To bridge the gap between ER and the downstream task in an analysis pipeline, we propose five methods to cho…
Federated learning is a learning paradigm to enable collaborative learning across different parties without revealing raw data. Notably, vertical federated learning (VFL), where parties share the same set of samples but only hold partial features, has a wide range of real-world applications. However, most existing studies in VFL disregard the "record linkage" process. They design algorithms either assuming the data from different parties can be exactly linked or simply linking each record with its most similar neighboring record. These approaches may fail to capture the key features from other…
Princeton Neuroscience Institute（普林斯顿神经科学研究所）；Princeton University（普林斯顿大学）；University of California, Santa Barbara（加州大学圣巴巴拉分校）；Center for Visual Science（视觉科学中心）；University of Rochester（罗切斯特大学）
Gaussian Process Factor Analysis (GPFA) has been broadly applied to the problem of identifying smooth, low-dimensional temporal structure underlying large-scale neural recordings. However, spike trains are non-Gaussian, which motivates combining GPFA with discrete observation models for binned spike count data. The drawback to this approach is that GPFA priors are not conjugate to count model likelihoods, which makes inference challenging. Here we address this obstacle by introducing a fast, approximate inference method for non-conjugate GPFA models. Our approach uses orthogonal second-order p…
Several applications require counting the number of distinct items in the data, which is known as the cardinality counting problem. Example applications include health applications such as rare disease patients counting for adequate awareness and funding, and counting the number of cases of a new disease for outbreak detection, marketing applications such as counting the visibility reached for a new product, and cybersecurity applications such as tracking the number of unique views of social media posts. The data needed for the counting is however often personal and sensitive, and need to be p…
Many analyses require linking records from two databases comprising overlapping sets of individuals. In the absence of unique identifiers, the linkage procedure often involves matching on a set of categorical variables, such as demographics, common to both files. Typically, however, the resulting matches are inexact: some cross-classifications of the matching variables do not generate unique links across files. Further, the variables used for matching can be subject to reporting errors, which introduce additional uncertainty in analyses. We present a Bayesian file matching methodology designed…
Databases often contain corrupted, degraded, and noisy data with duplicate entries across and within each database. Such problems arise in citations, medical databases, genetics, human rights databases, and a variety of other applied settings. The target of statistical inference can be viewed as an unsupervised problem of determining the edges of a bipartite graph that links the observed records to unobserved latent entities. Bayesian approaches provide attractive benefits, naturally providing uncertainty quantification via posterior probabilities. We propose a novel record linkage approach ba…
Multi-source entity linkage focuses on integrating knowledge from multiple sources by linking the records that represent the same real world entity. This is critical in high-impact applications such as data cleaning and user stitching. The state-of-the-art entity linkage pipelines mainly depend on supervised learning that requires abundant amounts of training data. However, collecting well-labeled training data becomes expensive when the data from many sources arrives incrementally over time. Moreover, the trained models can easily overfit to specific data sources, and thus fail to generalize …
Personalized Binomial DAGs Learning with Network Structured Covariates
Booth School of Business, University of Chicago（芝加哥大学布斯商学院）；University of Michigan（密歇根大学）；Ant Financial Group（蚂蚁集团）；Marshall School of Business, University of Southern California（南加州大学马歇尔商学院）
Data of practical interest - such as personal records, transaction logs, and medical histories - are sequential collections of events relevant to a particular source entity. Recent studies have attempted to link sequences that represent a common entity across data sets to allow more comprehensive statistical analyses and to identify potential privacy failures. Yet, current approaches remain tailored to their specific domains of application, and they fail when co-referent sequences in different data sets contain sparse or no common events, which occurs frequently in many cases. To address this,…
Privacy-Preserving EHR Data Transformation via Geometric Operators: A Human-AI Co-Design Technical Report
Hong Kong Institute of AI for Science (HKAI-Sci), City University of Hong Kong（香港人工智能科学研究院（HKAI-Sci），香港城市大学）；Department of Biostatistics, City University of Hong Kong（香港城市大学生物统计学系）；Institute of Digital Medicine, City University of Hong Kong（香港城市大学数字医学研究院）；YIDU TECH co. Ltd.（YIDU科技有限公司）
