arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 1902.04729cs.CV
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Accurate 3D Cell Segmentation using Deep Feature and CRF Refinement

University of California, Santa Barbara(加州大学圣巴巴拉分校);Purdue University(普渡大学)

Jiaxiang Jiang, Po-Yu Kao, Samuel A. Belteton, Daniel B. Szymanski, B. S. Manjunath

英文摘要:

We consider the problem of accurately identifying cell boundaries and labeling individual cells in confocal microscopy images, specifically, 3D image stacks of cells with tagged cell membranes. Precise identification of cell boundaries, their shapes, and quantifying inter-cellular space leads to a better understanding of cell morphogenesis. Towards this, we outline a cell segmentation method that uses a deep neural network architecture to extract a confidence map of cell boundaries, followed by a 3D watershed algorithm and a final refinement using a conditional random field. In addition to improving the accuracy of segmentation compared to other state-of-the-art methods, the proposed approach also generalizes well to different datasets without the need to retrain the network for each dataset. Detailed experimental results are provided, and the source code is available on GitHub.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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