We present a probabilistic model for unsupervised alignment of high-dimensional time-warped sequences based on the Dirichlet Process Mixture Model (DPMM). We follow the approach introduced in (Kazlauskaite, 2018) of simultaneously representing each data sequence as a composition of a true underlying function and a time-warping, both of which are modelled using Gaussian processes (GPs) (Rasmussen, 2005), and aligning the underlying functions using an unsupervised alignment method. In (Kazlauskaite, 2018) the alignment is performed using the GP latent variable model (GP-LVM) (Lawrence, 2005) as a model of sequences, while our main contribution is extending this approach to using DPMM, which allows us to align the sequences temporally and cluster them at the same time. We show that the DPMM achieves competitive results in comparison to the GP-LVM on synthetic and real-world data sets, and discuss the different properties of the estimated underlying functions and the time-warps favoured by these models.
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）
This paper proposes a Hilbert space embedding for Dirichlet Process mixture models via a stick-breaking construction of Sethuraman. Although Bayesian nonparametrics offers a powerful approach to construct a prior that avoids the need to specify the model size/complexity explicitly, an exact inference is often intractable. On the other hand, frequentist approaches such as kernel machines, which suffer from the model selection/comparison problems, often benefit from efficient learning algorithms. This paper discusses the possibility to combine the best of both worlds by using the Dirichlet Proce…
University of Washington（华盛顿大学）；Massachusetts Institute of Technology（麻省理工学院）
We present a Dirichlet process mixture model over discrete incomplete rankings and study two Gibbs sampling inference techniques for estimating posterior clusterings. The first approach uses a slice sampling subcomponent for estimating cluster parameters. The second approach marginalizes out several cluster parameters by taking advantage of approximations to the conditional posteriors. We empirically demonstrate (1) the effectiveness of this approximation for improving convergence, (2) the benefits of the Dirichlet process model over alternative clustering techniques for ranked data, and (3) t…
In this work, we develop a novel Bayesian estimation method for the Dirichlet process (DP) mixture of the inverted Dirichlet distributions, which has been shown to be very flexible for modeling vectors with positive elements. The recently proposed extended variational inference (EVI) framework is adopted to derive an analytically tractable solution. The convergency of the proposed algorithm is theoretically guaranteed by introducing single lower bound approximation to the original objective function in the VI framework. In principle, the proposed model can be viewed as an infinite inverted Dir…
In recent years, we have seen a handful of work on inference algorithms over non-stationary data streams. Given their flexibility, Bayesian non-parametric models are a good candidate for these scenarios. However, reliable streaming inference under the concept drift phenomenon is still an open problem for these models. In this work, we propose a variational inference algorithm for Dirichlet process mixture models. Our proposal deals with the concept drift by including an exponential forgetting over the prior global parameters. Our algorithm allows to adapt the learned model to the concept drift…
We consider the estimation of Dirichlet Process Mixture Models (DPMMs) in distributed environments, where data are distributed across multiple computing nodes. A key advantage of Bayesian nonparametric models such as DPMMs is that they allow new components to be introduced on the fly as needed. This, however, posts an important challenge to distributed estimation -- how to handle new components efficiently and consistently. To tackle this problem, we propose a new estimation method, which allows new components to be created locally in individual computing nodes. Components corresponding to the…
MIT（麻省理工学院）；Duke University（杜克大学）；Ohio State University（俄亥俄州立大学）
This paper presents a novel algorithm, based upon the dependent Dirichlet process mixture model (DDPMM), for clustering batch-sequential data containing an unknown number of evolving clusters. The algorithm is derived via a low-variance asymptotic analysis of the Gibbs sampling algorithm for the DDPMM, and provides a hard clustering with convergence guarantees similar to those of the k-means algorithm. Empirical results from a synthetic test with moving Gaussian clusters and a test with real ADS-B aircraft trajectory data demonstrate that the algorithm requires orders of magnitude less computa…
Normandie Univ（诺曼底大学）；UNICAEN（卡昂大学）；CNRS（法国国家科学研究中心）；Aix Marseille Université（艾克斯-马赛大学）；ENSAM（法国国立高等工程技术学校）；Université de Toulon（土伦大学）
The parsimonious Gaussian mixture models, which exploit an eigenvalue decomposition of the group covariance matrices of the Gaussian mixture, have shown their success in particular in cluster analysis. Their estimation is in general performed by maximum likelihood estimation and has also been considered from a parametric Bayesian prospective. We propose new Dirichlet Process Parsimonious mixtures (DPPM) which represent a Bayesian nonparametric formulation of these parsimonious Gaussian mixture models. The proposed DPPM models are Bayesian nonparametric parsimonious mixture models that allow to…
University of California, Davis（加州大学戴维斯分校）；New York University（纽约大学）；University of California, Berkeley（加州大学伯克利分校）
With the widespread success of deep neural networks in science and technology, it is becoming increasingly important to quantify the uncertainty of the predictions produced by deep learning. In this paper, we introduce a new method that attaches an explicit uncertainty statement to the probabilities of classification using deep neural networks. Precisely, we view that the classification probabilities are sampled from an unknown distribution, and we propose to learn this distribution through the Dirichlet mixture that is flexible enough for approximating any continuous distribution on the simpl…
We propose an effective method to solve the event sequence clustering problems based on a novel Dirichlet mixture model of a special but significant type of point processes --- Hawkes process. In this model, each event sequence belonging to a cluster is generated via the same Hawkes process with specific parameters, and different clusters correspond to different Hawkes processes. The prior distribution of the Hawkes processes is controlled via a Dirichlet distribution. We learn the model via a maximum likelihood estimator (MLE) and propose an effective variational Bayesian inference algorithm.…
East China Normal University（华东师范大学）；Columbia University（哥伦比亚大学）
Dirichlet processes (DP) are widely applied in Bayesian nonparametric modeling. However, in their basic form they do not directly integrate dependency information among data arising from space and time. In this paper, we propose location dependent Dirichlet processes (LDDP) which incorporate nonparametric Gaussian processes in the DP modeling framework to model such dependencies. We develop the LDDP in the context of mixture modeling, and develop a mean field variational inference algorithm for this mixture model. The effectiveness of the proposed modeling framework is shown on an image segmen…
Practical tools for clustering streaming data must be fast enough to handle the arrival rate of the observations. Typically, they also must adapt on the fly to possible lack of stationarity; i.e., the data statistics may be time-dependent due to various forms of drifts, changes in the number of clusters, etc. The Dirichlet Process Mixture Model (DPMM), whose Bayesian nonparametric nature allows it to adapt its complexity to the data, seems a natural choice for the streaming-data case. In its classical formulation, however, the DPMM cannot capture common types of drifts in the data statistics. …
We develop a sequential low-complexity inference procedure for Dirichlet process mixtures of Gaussians for online clustering and parameter estimation when the number of clusters are unknown a-priori. We present an easily computable, closed form parametric expression for the conditional likelihood, in which hyperparameters are recursively updated as a function of the streaming data assuming conjugate priors. Motivated by large-sample asymptotics, we propose a novel adaptive low-complexity design for the Dirichlet process concentration parameter and show that the number of classes grow at most a…
Beijing University of Posts and Telecommunications（北京邮电大学）
In this paper, we continue our previous work on the Dirichlet mixture model (DMM)-based VQ to derive the performance bound of the LSF VQ. The LSF parameters are transformed into the $Δ$LSF domain and the underlying distribution of the $Δ$LSF parameters are modelled by a DMM with finite number of mixture components. The quantization distortion, in terms of the mean squared error (MSE), is calculated with the high rate theory. The mapping relation between the perceptually motivated log spectral distortion (LSD) and the MSE is empirically approximated by a polynomial. With this mapping function, …
We propose Dirichlet Process mixtures of Generalized Linear Models (DP-GLM), a new method of nonparametric regression that accommodates continuous and categorical inputs, and responses that can be modeled by a generalized linear model. We prove conditions for the asymptotic unbiasedness of the DP-GLM regression mean function estimate. We also give examples for when those conditions hold, including models for compactly supported continuous distributions and a model with continuous covariates and categorical response. We empirically analyze the properties of the DP-GLM and why it provides better…
The Dirichlet Process Gaussian Mixture Model (DPGMM) is often used to cluster data when the number of clusters is unknown. One main DPGMM inference paradigm relies on sampling. Here we consider a known state-of-art sampler (proposed by Chang and Fisher III (2013) and improved by Dinari et al. (2019)), analyze its failure modes, and show how to improve it, often drastically. Concretely, in that sampler, whenever a new cluster is formed it is augmented with two subclusters whose labels are initialized at random. Upon their evolution, the subclusters serve to propose a split of the parent cluster…
Regime-Adaptive Bayesian Optimization via Dirichlet Process Mixtures of Gaussian Processes
Department of Computer Science, Florida State University（佛罗里达州立大学计算机科学系）；Department of Computer Science, University of Chicago（芝加哥大学计算机科学系）；School of Mechanical Engineering, Purdue University（普渡大学机械工程学院）；College of Nanotechnology, Science, and Engineering, State University of New York at Albany（纽约州立大学阿尔巴尼分校纳米技术、科学与工程学院）
Dirichlet process mixtures are flexible non-parametric models, particularly suited to density estimation and probabilistic clustering. In this work we study the posterior distribution induced by Dirichlet process mixtures as the sample size increases, and more specifically focus on consistency for the unknown number of clusters when the observed data are generated from a finite mixture. Crucially, we consider the situation where a prior is placed on the concentration parameter of the underlying Dirichlet process. Previous findings in the literature suggest that Dirichlet process mixtures are t…
Thanks to the reparameterization trick, deep latent Gaussian models have shown tremendous success recently in learning latent representations. The ability to couple them however with nonparamet-ric priors such as the Dirichlet Process (DP) hasn't seen similar success due to its non parameteriz-able nature. In this paper, we present an alternative treatment of the variational posterior of the Dirichlet Process Deep Latent Gaussian Mixture Model (DP-DLGMM), where we show that the prior cluster parameters and the variational posteriors of the beta distributions and cluster hidden variables can be…
In this paper we propose a model with a Dirichlet process mixture of gamma densities in the bulk part below threshold and a generalized Pareto density in the tail for extreme value estimation. The proposed model is simple and flexible allowing us posterior density estimation and posterior inference for high quantiles. The model works well even for small sample sizes and in the absence of prior information. We evaluate the performance of the proposed model through a simulation study. Finally, the proposed model is applied to a real environmental data.
It is shown that a simple Dirichlet process mixture of multivariate normals offers Bayesian density estimation with adaptive posterior convergence rates. Toward this, a novel sieve for non-parametric mixture densities is explored, and its rate adaptability to various smoothness classes of densities in arbitrary dimension is demonstrated. This sieve construction is expected to offer a substantial technical advancement in studying Bayesian non-parametric mixture models based on stick-breaking priors.
We present the multidimensional membership mixture (M3) models where every dimension of the membership represents an independent mixture model and each data point is generated from the selected mixture components jointly. This is helpful when the data has a certain shared structure. For example, three unique means and three unique variances can effectively form a Gaussian mixture model with nine components, while requiring only six parameters to fully describe it. In this paper, we present three instantiations of M3 models (together with the learning and inference algorithms): infinite, finite…
Despite the growing interest in continual learning, most of its contemporary works have been studied in a rather restricted setting where tasks are clearly distinguishable, and task boundaries are known during training. However, if our goal is to develop an algorithm that learns as humans do, this setting is far from realistic, and it is essential to develop a methodology that works in a task-free manner. Meanwhile, among several branches of continual learning, expansion-based methods have the advantage of eliminating catastrophic forgetting by allocating new resources to learn new data. In th…
We study nonparametric Bayesian inference with location mixtures of the Laplace density and a Dirichlet process prior on the mixing distribution. We derive a contraction rate of the corresponding posterior distribution, both for the mixing distribution relative to the Wasserstein metric and for the mixed density relative to the Hellinger and $L_q$ metrics.
The influence of Dirichlet process mixture is ubiquitous in the Bayesian nonparametrics literature. But sampling from its posterior distribution remains a challenge, despite the advent of various Markov chain Monte Carlo methods. The primary challenge is the infinite-dimensional setup, and even if the infinite-dimensional random measure is integrated out, high-dimensionality and discreteness still remain difficult issues to deal with. In this article, exploiting the key ideas proposed in Bhattacharya (2021b), we propose a novel methodology for drawing iid realizations from posteriors of Dirich…
In the realm of unsupervised learning, Bayesian nonparametric mixture models, exemplified by the Dirichlet Process Mixture Model (DPMM), provide a principled approach for adapting the complexity of the model to the data. Such models are particularly useful in clustering tasks where the number of clusters is unknown. Despite their potential and mathematical elegance, however, DPMMs have yet to become a mainstream tool widely adopted by practitioners. This is arguably due to a misconception that these models scale poorly as well as the lack of high-performance (and user-friendly) software tools …
Nonparametric mixture models based on the Dirichlet process are an elegant alternative to finite models when the number of underlying components is unknown, but inference in such models can be slow. Existing attempts to parallelize inference in such models have relied on introducing approximations, which can lead to inaccuracies in the posterior estimate. In this paper, we describe auxiliary variable representations for the Dirichlet process and the hierarchical Dirichlet process that allow us to sample from the true posterior in a distributed manner. We show that our approach allows scalable …
Dirichlet process mixture models (DPMM) play a central role in Bayesian nonparametrics, with applications throughout statistics and machine learning. DPMMs are generally used in clustering problems where the number of clusters is not known in advance, and the posterior distribution is treated as providing inference for this number. Recently, however, it has been shown that the DPMM is inconsistent in inferring the true number of components in certain cases. This is an asymptotic result, and it would be desirable to understand whether it holds with finite samples, and to more fully understand t…
We present a mixed multinomial logit (MNL) model, which leverages the truncated stick-breaking process representation of the Dirichlet process as a flexible nonparametric mixing distribution. The proposed model is a Dirichlet process mixture model and accommodates discrete representations of heterogeneity, like a latent class MNL model. Yet, unlike a latent class MNL model, the proposed discrete choice model does not require the analyst to fix the number of mixture components prior to estimation, as the complexity of the discrete mixing distribution is inferred from the evidence. For posterior…
University of California, Irvine（加州大学欧文分校）；University of Algarve（阿尔加维大学）
Motivation: With the development of droplet based systems, massive single cell transcriptome data has become available, which enables analysis of cellular and molecular processes at single cell resolution and is instrumental to understanding many biological processes. While state-of-the-art clustering methods have been applied to the data, they face challenges in the following aspects: (1) the clustering quality still needs to be improved; (2) most models need prior knowledge on number of clusters, which is not always available; (3) there is a demand for faster computational speed. Results: We…
the University of Tokyo（东京大学）；Rikkyo University（立教大学）；National Institute of Informatics（国立信息学研究所）；The Canon Institute for Global Studies（佳能全球研究所）
Block modeling is widely used in studies on complex networks. The cornerstone model is the stochastic block model (SBM), widely used over the past decades. However, the SBM is limited in analyzing complex networks as the model is, in essence, a random graph model that cannot reproduce the basic properties of many complex networks, such as sparsity and heavy-tailed degree distribution. In this paper, we provide an edge exchangeable block model that incorporates such basic features and simultaneously infers the latent block structure of a given complex network. Our model is a Bayesian nonparamet…
Young isolated neutron stars (INS) most commonly manifest themselves as rotationally powered pulsars (RPPs) which involve conventional radio pulsars as well as gamma-ray pulsars (GRPs) and rotating radio transients (RRATs). Some other young INS families manifest themselves as anomalous X-ray pulsars (AXPs) and soft gamma-ray repeaters (SGRs) which are commonly accepted as magnetars, i.e. magnetically powered neutron stars with decaying superstrong fields. Yet some other young INS are identified as central compact objects (CCOs) and X-ray dim isolated neutron stars (XDINSs) which are cooling ob…
We show that rate-adaptive multivariate density estimation can be performed using Bayesian methods based on Dirichlet mixtures of normal kernels with a prior distribution on the kernel's covariance matrix parameter. We derive sufficient conditions on the prior specification that guarantee convergence to a true density at a rate that is optimal minimax for the smoothness class to which the true density belongs. No prior knowledge of smoothness is assumed. The sufficient conditions are shown to hold for the Dirichlet location mixture of normals prior with a Gaussian base measure and an inverse-W…
Copula-based methods provide a flexible approach to build missing data imputation models of multivariate data of mixed types. However, the choice of copula function is an open question. We consider a Bayesian nonparametric approach by using an infinite mixture of elliptical copulas induced by a Dirichlet process mixture to build a flexible copula function. A slice sampling algorithm is used to sample from the infinite dimensional parameter space. We extend the work on prior parallel tempering used in finite mixture models to the Dirichlet process mixture model to overcome the mixing issue in m…
The modelling of action potentials from extracellular recordings, or spike sorting, is a rich area of neuroscience research in which latent variable models are often used. Two such models, Overfitted Finite Mixture models (OFMs) and Dirichlet Process Mixture models (DPMs) are considered to provide insights for unsupervised clustering of complex, multivariate medical data when the number of clusters is unknown. OFM and DPM are structured in a similar hierarchical fashion but they are based on different philosophies with different underlying assumptions. This study investigates how these differe…
In model-based-clustering mixture models are used to group data points into clusters. A useful concept introduced for Gaussian mixtures by Malsiner Walli et al (2016) are sparse finite mixtures, where the prior distribution on the weight distribution of a mixture with $K$ components is chosen in such a way that a priori the number of clusters in the data is random and is allowed to be smaller than $K$ with high probability. The number of cluster is then inferred a posteriori from the data. The present paper makes the following contributions in the context of sparse finite mixture modelling. Fi…
ASN Technology Group Co,.Ltd（ASN科技集团有限公司）；University of Manchester（曼彻斯特大学）
In binary-transaction data-mining, traditional frequent itemset mining often produces results which are not straightforward to interpret. To overcome this problem, probability models are often used to produce more compact and conclusive results, albeit with some loss of accuracy. Bayesian statistics have been widely used in the development of probability models in machine learning in recent years and these methods have many advantages, including their abilities to avoid overfitting. In this paper, we develop two Bayesian mixture models with the Dirichlet distribution prior and the Dirichlet pr…
In this paper, we provide an explicit probability distribution for classification purposes. It is derived from the Bayesian nonparametric mixture of Dirichlet process model, but with suitable modifications which remove unsuitable aspects of the classification based on this model. The resulting approach then more closely resembles a classical hierarchical grouping rule in that it depends on sums of squares of neighboring values. The proposed probability model for classification relies on a simulation algorithm which will be based on a reversible MCMC algorithm for determining the probabilities,…
For extreme value estimation we propose to use a model with a Dirichlet process mixture of gamma densities in the center and generalized Pareto densities for the tails. Due to the randomness in the center and a heavy tailed density in the tails density estimation and posterior inference for high quantiles are possible. The approach can be used in a "default" manner on the positive reals because it works when prior information is unavailable. The proposed model can be easy to implement and a sensitivity analysis is provided. We applied the proposed model for simulated and real data sets.
PReMiuM is a recently developed R package for Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal and categorical response, as well as Normal and discrete covariates. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number …
We propose Dirichlet Process Mixture (DPM) models for prediction and cluster-wise variable selection, based on two choices of shrinkage baseline prior distributions for the linear regression coefficients, namely the Horseshoe prior and Normal-Gamma prior. We show in a simulation study that each of the two proposed DPM models tend to outperform the standard DPM model based on the non-shrinkage normal prior, in terms of predictive, variable selection, and clustering accuracy. This is especially true for the Horseshoe model, and when the number of covariates exceeds the within-cluster sample size…
Tensor Dirichlet Process Multinomial Mixture Model for Passenger Trajectory Clustering
University of Cologne（科隆大学）；Arizona State University（亚利桑那州立大学）；Tsinghua University（清华大学）；McGill University（麦吉尔大学）；The Hong Kong University of Science and Technology（香港科技大学）；HKUST (Guangzhou Campus)（香港科技大学（广州校区））
We developed a new quantum annealing (QA) algorithm for Dirichlet process mixture (DPM) models based on the Chinese restaurant process (CRP). QA is a parallelized extension of simulated annealing (SA), i.e., it is a parallel stochastic optimization technique. Existing approaches [Kurihara et al. UAI2009, Sato et al. UAI2009] and cannot be applied to the CRP because their QA framework is formulated using a fixed number of mixture components. The proposed QA algorithm can handle an unfixed number of classes in mixture models. We applied QA to a DPM model for clustering vertices in a network wher…
Dust particles recovered from the soles of shoes may be indicative of the sites recently visited by an individual, and, in particular, of the presence of an individual at a particular site of interest, e.g., the scene of a crime. By describing the dust profile of a given site by a multinomial distribution over a fixed number of dust particle types, we can define the probability distribution of the mixture of dust recovered from the sole of a shoe via Latent Dirichlet Allocation. We use Variational Bayesian Inference to study the parameters of the model, and use their resulting posterior distri…
In this article we propose novel Bayesian nonparametric methods using Dirichlet Process Mixture (DPM) models for detecting pairwise dependence between random variables while accounting for uncertainty in the form of the underlying distributions. A key criteria is that the procedures should scale to large data sets. In this regard we find that the formal calculation of the Bayes factor for a dependent-vs.-independent DPM joint probability measure is not feasible computationally. To address this we present Bayesian diagnostic measures for characterising evidence against a "null model" of pairwis…
Cavendish Laboratory（卡文迪什实验室）；Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）；Microsoft Research（微软研究院）
Latent Dirichlet Allocation models discrete data as a mixture of discrete distributions, using Dirichlet beliefs over the mixture weights. We study a variation of this concept, in which the documents' mixture weight beliefs are replaced with squashed Gaussian distributions. This allows documents to be associated with elements of a Hilbert space, admitting kernel topic models (KTM), modelling temporal, spatial, hierarchical, social and other structure between documents. The main challenge is efficient approximate inference on the latent Gaussian. We present an approximate algorithm cast around …
We address the problem of retrieving relevant experiments given a query experiment, motivated by the public databases of datasets in molecular biology and other experimental sciences, and the need of scientists to relate to earlier work on the level of actual measurement data. Since experiments are inherently noisy and databases ever accumulating, we argue that a retrieval engine should possess two particular characteristics. First, it should compare models learnt from the experiments rather than the raw measurements themselves: this allows incorporating experiment-specific prior knowledge to …
Tree structures are ubiquitous in data across many domains, and many datasets are naturally modelled by unobserved tree structures. In this paper, first we review the theory of random fragmentation processes [Bertoin, 2006], and a number of existing methods for modelling trees, including the popular nested Chinese restaurant process (nCRP). Then we define a general class of probability distributions over trees: the Dirichlet fragmentation process (DFP) through a novel combination of the theory of Dirichlet processes and random fragmentation processes. This DFP presents a stick-breaking constru…
Clustering has become a core technology in machine learning, largely due to its application in the field of unsupervised learning, clustering, classification, and density estimation. A frequentist approach exists to hand clustering based on mixture model which is known as the EM algorithm where the parameters of the mixture model are usually estimated into a maximum likelihood estimation framework. Bayesian approach for finite and infinite Gaussian mixture model generates point estimates for all variables as well as associated uncertainty in the form of the whole estimates' posterior distribut…
