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arXiv 1802.02610q-bio.OTphysics.bio-phphysics.data-an
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从线粒体DNA的核苷酸分布区分<I>猫科</I>和<I>熊科</I>

Telling apart <I>Felidae</I> and <I>Ursidae</I> from the distribution of nucleotides in mitochondrial DNA

Andrij Rovenchak

摘要:

线粒体DNA中核苷酸序列的秩-频率分布以类似于语言学方法的方式定义,最高频率的核碱基作为空白。对于这样的序列,计算熵和平均长度。这些参数被证明是区分种类<I>的猫科动物</I>(猫)和<I>熊科</I>(熊)家庭。从纯粹的数值上,我们可以看出,特别是大熊猫是熊,而考拉不是。使用简单的概率模型解释了观察到的参数之间的线性关系。基于非加性广义玻色分布的方法被用来分析核苷酸序列的频谱。在这种情况下,家庭的分离不是很尖锐。然而,与<I>熊科</I>相比<I>,猫科动物</I>的分布平均具有较长的尾巴。

英文摘要:

Rank--frequency distributions of nucleotide sequences in mitochondrial DNA are defined in a way analogous to the linguistic approach, with the highest-frequent nucleobase serving as a whitespace. For such sequences, entropy and mean length are calculated. These parameters are shown to discriminate the species of the <I>Felidae</I> (cats) and <I>Ursidae</I> (bears) families. From purely numerical values we are able to see in particular that giant pandas are bears while koalas are not. The observed linear relation between the parameters is explained using a simple probabilistic model. The approach based on the nonadditive generalization of the Bose-distribution is used to analyze the frequency spectra of the nucleotide sequences. In this case, the separation of families is not very sharp. Nevertheless, the distributions for <I>Felidae</I> have on average longer tails comparing to <I>Ursidae</I>.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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