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arXiv 1802.01174cs.DL
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一种生物医学科技论文作者投稿信息的发现与提取方法

A Method for Discovering and Extracting Author Contributions Information from Scientific Biomedical Publications

Dominika Tkaczyk, Andrew Collins, Joeran Beel

摘要:

创建科学出版物是一个复杂的过程,通常由许多不同的活动组成,例如设计实验,数据准备,编程软件以及撰写和编辑手稿。关于论文作者个人贡献的信息对于评估作者的科学成就很重要。一些生物医学学科的出版物以自然语言撰写的简短章节的形式描述了作者的作用,通常标题为“作者的贡献”。在本文中,我们提出了一个分析的角色通常出现在这些部分的内容,并提出了一个算法自动提取作者的角色从自然语言文本中的科学出版物。在研究的第一部分,我们使用聚类技术,以及开放信息抽取(OpenIE),半自动地发现从PubMed中心资源获得的2,000个贡献部分的语料库中最流行的角色。通过我们的方法发现的角色包括:实验(1,743个实例,占语料库中整个角色集的17%),分析(1,343,16%),研究设计(1 132人,13%),口译(879,10%),概念化(865,10%),纸质阅读(823,10%)、论文撰写(724,8%)、论文评审(501,6%)、论文起草(351,4%)、协调(319,4%)、数据汇集(76,1%)、论文评审(41,0.5%)和文献综述(41,0.5%)。发现的角色,然后使用自动建立一个训练集的监督角色提取器,基于朴素贝叶斯算法。根据我们进行的评估,所提出的角色提取算法是能够从文本中提取的角色与精度0.71,召回率0.49和F1 0.58。

英文摘要:

Creating scientific publications is a complex process, typically composed of a number of different activities, such as designing the experiments, data preparation, programming software and writing and editing the manuscript. The information about the contributions of individual authors of a paper is important in the context of assessing authors' scientific achievements. Some publications in biomedical disciplines contain a description of authors' roles in the form of a short section written in natural language, typically entitled "Authors' contributions". In this paper, we present an analysis of roles commonly appearing in the content of these sections, and propose an algorithm for automatic extraction of authors' roles from natural language text in scientific publications. During the first part of the study, we used clustering techniques, as well as Open Information Extraction (OpenIE), to semi-automatically discover the most popular roles within a corpus of 2,000 contributions sections obtained from PubMed Central resources. The roles discovered by our approach include: experimenting (1,743 instances, 17% of the entire role set within the corpus), analysis (1,343, 16%), study design (1,132, 13%), interpretation (879, 10%), conceptualization (865, 10%), paper reading (823, 10%), paper writing (724, 8%), paper review (501, 6%), paper drafting (351, 4%), coordination (319, 4%), data collection (76, 1%), paper review (41, 0.5%) and literature review (41, 0.5%). Discovered roles were then used to automatically build a training set for the supervised role extractor, based on Naive Bayes algorithm. According to the evaluation we performed, the proposed role extraction algorithm is able to extract the roles from the text with precision 0.71, recall 0.49 and F1 0.58.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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