Determining risk contributions of unit exposures to portfolio-wide economic capital is an important task in financial risk management. Computing risk contributions involves difficulties caused by rare-event simulations. In this study, we address the problem of estimating risk contributions when the total risk is measured by value-at-risk (VaR). Our proposed estimator of VaR contributions is based on the Metropolis-Hasting (MH) algorithm, which is one of the most prevalent Markov chain Monte Carlo (MCMC) methods. Unlike existing estimators, our MH-based estimator consists of samples from conditional loss distribution given a rare event of interest. This feature enhances sample efficiency compared with the crude Monte Carlo method. Moreover, our method has the consistency and asymptotic normality, and is widely applicable to various risk models having joint loss density. Our numerical experiments based on simulation and real-world data demonstrate that in various risk models, even those having high-dimensional (approximately 500) inhomogeneous margins, our MH estimator has smaller bias and mean squared error compared with existing estimators.
Bayesian inference for fractionally integrated exponential generalized autoregressive conditional heteroskedastic (FIEGARCH) models using Markov Chain Monte Carlo (MCMC) methods is described. A simulation study is presented to access the performance of the procedure, under the presence of long-memory in the volatility. Samples from FIEGARCH processes are obtained upon considering the generalized error distribution (GED) for the innovation process. Different values for the tail-thickness parameter νare considered covering both scenarios, innovation processes with lighter (ν<2) and heavier (ν>2)…
In cohort studies binary outcomes are very often analyzed by logistic regression. However, it is well-known that when the goal is to estimate a risk ratio, the logistic regression is inappropriate if the outcome is common. In these cases, a log-binomial regression model is preferable. On the other hand, the estimation of the regression coefficients of the log-binomial model is difficult due to the constraints that must be imposed on these coefficients. Bayesian methods allow a straightforward approach for log-binomial regression models, produce smaller mean squared errors and the posterior inf…
A general methodology is presented for the construction and effective use of control variates for reversible MCMC samplers. The values of the coefficients of the optimal linear combination of the control variates are computed, and adaptive, consistent MCMC estimators are derived for these optimal coefficients. All methodological and asymptotic arguments are rigorously justified. Numerous MCMC simulation examples from Bayesian inference applications demonstrate that the resulting variance reduction can be quite dramatic.
We address the problem of upper bounding the mean square error of MCMC estimators. Our analysis is nonasymptotic. We first establish a general result valid for essentially all ergodic Markov chains encountered in Bayesian computation and a possibly unbounded target function $f$. The bound is sharp in the sense that the leading term is exactly $σ_{\mathrm {as}}^2(P,f)/n$, where $σ_{\mathrm{as}}^2(P,f)$ is the CLT asymptotic variance. Next, we proceed to specific additional assumptions and give explicit computable bounds for geometrically and polynomially ergodic Markov chains under quantitative…
We consider state and parameter estimation in multiple target tracking problems with data association uncertainties and unknown number of targets. We show how the problem can be recast into a conditionally linear Gaussian state-space model with unknown parameters and present an algorithm for computationally efficient inference on the resulting model. The proposed algorithm is based on combining the Rao-Blackwellized Monte Carlo data association algorithm with particle Markov chain Monte Carlo algorithms to jointly estimate both parameters and data associations. Both particle marginal Metropoli…
The generalized partial credit model (GPCM) is a popular polytomous IRT model that has been widely used in large-scale educational surveys and health care services. Same as other IRT models, GPCM can be estimated via marginal maximum likelihood estimation (MMLE) and Markov chain Monte Carlo (MCMC) methods. While studies comparing MMLE and MCMC as estimation methods for other polytomous IRT models such as the nominal response model and the graded response model exist in literature, no studies have compared how well MMLE and MCMC recover the model parameters of GPCM. In the current study, a comp…
In the case of a linear state space model, we implement an MCMC sampler with two phases. In the learning phase, a self-tuning sampler is used to learn the parameter mean and covariance structure. In the estimation phase, the parameter mean and covariance structure informs the proposed mechanism and is also used in a delayed-acceptance algorithm. Information on the resulting state of the system is given by a Gaussian mixture. In on-line mode, the algorithm is adaptive and uses a sliding window approach to accelerate sampling speed and to maintain appropriate acceptance rates. We apply the algor…
MCMC methods are used in Bayesian statistics not only to sample from posterior distributions but also to estimate expectations. Underlying functions are most often defined on a continuous state space and can be unbounded. We consider a regenerative setting and Monte Carlo estimators based on i.i.d. blocks of a Markov chain trajectory. The main result is an inequality for the mean square error. We also consider confidence bounds. We first derive the results in terms of the asymptotic variance and then bound the asymptotic variance for both uniformly ergodic and geometrically ergodic Markov chai…
This paper addresses the problem of estimating the Potts parameter B jointly with the unknown parameters of a Bayesian model within a Markov chain Monte Carlo (MCMC) algorithm. Standard MCMC methods cannot be applied to this problem because performing inference on B requires computing the intractable normalizing constant of the Potts model. In the proposed MCMC method the estimation of B is conducted using a likelihood-free Metropolis-Hastings algorithm. Experimental results obtained for synthetic data show that estimating B jointly with the other unknown parameters leads to estimation results…
A novel adaptive Markov chain Monte Carlo algorithm is presented. The algorithm utilizes sparsity in the partial correlation structure of a density to efficiently estimate the covariance matrix through the Cholesky factor of the precision matrix. The algorithm also utilizes the sparsity to sample efficiently from both MALA and Metropolis Hasting random walk proposals. Further, an algorithm that estimates the partial correlation structure of a density is proposed. Combining this with the Cholesky factor estimation algorithm results in an efficient black-box AMCMC method that can be used for gen…
The subject of stochastic approximation was founded by Robbins and Monro [Ann. Math. Statist. 22 (1951) 400--407]. After five decades of continual development, it has developed into an important area in systems control and optimization, and it has also served as a prototype for the development of adaptive algorithms for on-line estimation and control of stochastic systems. Recently, it has been used in statistics with Markov chain Monte Carlo for solving maximum likelihood estimation problems and for general simulation and optimizations. In this paper, we first show that the trajectory averagi…
Cornell University（康奈尔大学）；UNSW Australia（澳大利亚新南威尔士大学）；Ecole Polytechnique Fédérale de Lausanne（洛桑联邦理工学院）
Variational Bayes (VB) methods have emerged as a fast and computationally-efficient alternative to Markov chain Monte Carlo (MCMC) methods for scalable Bayesian estimation of mixed multinomial logit (MMNL) models. It has been established that VB is substantially faster than MCMC at practically no compromises in predictive accuracy. In this paper, we address two critical gaps concerning the usage and understanding of VB for MMNL. First, extant VB methods are limited to utility specifications involving only individual-specific taste parameters. Second, the finite-sample properties of VB estimato…
A general methodology is introduced for the construction and effective application of control variates to estimation problems involving data from reversible MCMC samplers. We propose the use of a specific class of functions as control variates, and we introduce a new, consistent estimator for the values of the coefficients of the optimal linear combination of these functions. The form and proposed construction of the control variates is derived from our solution of the Poisson equation associated with a specific MCMC scenario. The new estimator, which can be applied to the same MCMC sample, is…
Bayesian inference for stochastic volatility models using MCMC methods highly depends on actual parameter values in terms of sampling efficiency. While draws from the posterior utilizing the standard centered parameterization break down when the volatility of volatility parameter in the latent state equation is small, non-centered versions of the model show deficiencies for highly persistent latent variable series. The novel approach of ancillarity-sufficiency interweaving has recently been shown to aid in overcoming these issues for a broad class of multilevel models. In this paper, we demons…
Probabilistic programming languages can simplify the development of machine learning techniques, but only if inference is sufficiently scalable. Unfortunately, Bayesian parameter estimation for highly coupled models such as regressions and state-space models still scales poorly; each MCMC transition takes linear time in the number of observations. This paper describes a sublinear-time algorithm for making Metropolis-Hastings (MH) updates to latent variables in probabilistic programs. The approach generalizes recently introduced approximate MH techniques: instead of subsampling data items assum…
Stochastic gradient MCMC (SG-MCMC) has played an important role in large-scale Bayesian learning, with well-developed theoretical convergence properties. In such applications of SG-MCMC, it is becoming increasingly popular to employ distributed systems, where stochastic gradients are computed based on some outdated parameters, yielding what are termed stale gradients. While stale gradients could be directly used in SG-MCMC, their impact on convergence properties has not been well studied. In this paper we develop theory to show that while the bias and MSE of an SG-MCMC algorithm depend on the …
This paper concerns differentially private Bayesian estimation of the parameters of a population distribution, when a statistic of a sample from that population is shared in noise to provide differential privacy. This work mainly addresses two problems: (1) What statistic of the sample should be shared privately? For the first question, i.e., the one about statistic selection, we promote using the Fisher information. We find out that, the statistic that is most informative in a non-privacy setting may not be the optimal choice under the privacy restrictions. We provide several examples to supp…
In the context of nonparametric Bayesian estimation a Markov chain Monte Carlo algorithm is devised and implemented to sample from the posterior distribution of the drift function of a continuously or discretely observed one-dimensional diffusion. The drift is modeled by a scaled linear combination of basis functions with a Gaussian prior on the coefficients. The scaling parameter is equipped with a partially conjugate prior. The number of basis function in the drift is equipped with a prior distribution as well. For continuous data, a reversible jump Markov chain algorithm enables the explora…
This paper studies computationally and theoretically attractive estimators called the Laplace type estimators (LTE), which include means and quantiles of Quasi-posterior distributions defined as transformations of general (non-likelihood-based) statistical criterion functions, such as those in GMM, nonlinear IV, empirical likelihood, and minimum distance methods. The approach generates an alternative to classical extremum estimation and also falls outside the parametric Bayesian approach. For example, it offers a new attractive estimation method for such important semi-parametric problems as c…
We consider batch size selection for a general class of multivariate batch means variance estimators, which are computationally viable for high-dimensional Markov chain Monte Carlo simulations. We derive the asymptotic mean squared error for this class of estimators. Further, we propose a parametric technique for estimating optimal batch sizes and discuss practical issues regarding the estimating process. Vector auto-regressive, Bayesian logistic regression, and Bayesian dynamic space-time examples illustrate the quality of the estimation procedure where the proposed optimal batch sizes outper…
A new methodology is presented for the construction of control variates to reduce the variance of additive functionals of Markov Chain Monte Carlo (MCMC) samplers. Our control variates are definedthrough the minimization of the asymptotic variance of the Langevin diffusion over a family of functions, which can be seen as a quadratic risk minimization procedure. The use of these control variates is theoretically justified. We show that the asymptotic variances of some well-known MCMC algorithms, including the Random Walk Metropolis and the (Metropolis) Unadjusted/Adjusted Langevin Algorithm, ar…
Bayesian estimation methods for sparse blind deconvolution problems conventionally employ Bernoulli-Gaussian (BG) prior for modeling sparse sequences and utilize Markov Chain Monte Carlo (MCMC) methods for the estimation of unknowns. However, the discrete nature of the BG model creates computational bottlenecks, preventing efficient exploration of the probability space even with the recently proposed enhanced sampler schemes. To address this issue, we propose an alternative MCMC method by modeling the sparse sequences using the Normal-Inverse-Gamma (NIG) prior. We derive effective Gibbs sample…
The testlet model is a popular statistical approach widely used by researchers and practitioners to address local item dependence (LID), a violation of the local independence assumption in item response theory (IRT) which can cause various deleterious psychometric consequences. Same as other psychometric models, the utility of the testlet model relies heavily on accurate estimation of its model parameters. The two-parameter logistic (2PL) testlet model has only been systematically investigated in the psychometric literature regarding its model parameter recovery with one full information estim…
The University of Edinburgh（爱丁堡大学）；The Alan Turing Institute（艾伦·图灵研究所）；National Technical University of Athens（雅典国立技术大学）
In this article we consider sampling from log concave distributions in Hamiltonian setting, without assuming that the objective gradient is globally Lipschitz. We propose two algorithms based on monotone polygonal (tamed) Euler schemes, to sample from a target measure, and provide non-asymptotic 2-Wasserstein distance bounds between the law of the process of each algorithm and the target measure. Finally, we apply these results to bound the excess risk optimization error of the associated optimization problem.
In this paper we propose a novel variance reduction approach for additive functionals of Markov chains based on minimization of an estimate for the asymptotic variance of these functionals over suitable classes of control variates. A distinctive feature of the proposed approach is its ability to significantly reduce the overall finite sample variance. This feature is theoretically demonstrated by means of a deep non asymptotic analysis of a variance reduced functional as well as by a thorough simulation study. In particular we apply our method to various MCMC Bayesian estimation problems where…
Markov chain Monte Carlo (MCMC) algorithms provide a very general recipe for estimating properties of complicated distributions. While their use has become commonplace and there is a large literature on MCMC theory and practice, MCMC users still have to contend with several challenges with each implementation of the algorithm. These challenges include determining how to construct an efficient algorithm, finding reasonable starting values, deciding whether the sample-based estimates are accurate, and determining an appropriate length (stopping rule) for the Markov chain. We describe an approach…
Markov chain Monte Carlo (MCMC) simulations are commonly employed for estimating features of a target distribution, particularly for Bayesian inference. A fundamental challenge is determining when these simulations should stop. We consider a sequential stopping rule that terminates the simulation when the width of a confidence interval is sufficiently small relative to the size of the target parameter. Specifically, we propose relative magnitude and relative standard deviation stopping rules in the context of MCMC. In each setting, we develop sufficient conditions for asymptotic validity, that…
In Markov chain Monte Carlo (MCMC) sampling considerable thought goes into constructing random transitions. But those transitions are almost always driven by a simulated IID sequence. Recently it has been shown that replacing an IID sequence by a weakly completely uniformly distributed (WCUD) sequence leads to consistent estimation in finite state spaces. Unfortunately, few WCUD sequences are known. This paper gives general methods for proving that a sequence is WCUD, shows that some specific sequences are WCUD, and shows that certain operations on WCUD sequences yield new WCUD sequences. A nu…
Accurate and efficient estimation of rare events probabilities is of significant importance, since often the occurrences of such events have widespread impacts. The focus in this work is on precisely quantifying these probabilities, often encountered in reliability analysis of complex engineering systems, by introducing a gradient-based Hamiltonian Markov Chain Monte Carlo (HMCMC) framework, termed Approximate Sampling Target with Post-processing Adjustment (ASTPA). The basic idea is to construct a relevant target distribution by weighting the high-dimensional random variable space through a o…
We investigate the efficiency of a marginal likelihood estimator where the product of the marginal posterior distributions is used as an importance-sampling function. The approach is generally applicable to multi-block parameter vector settings, does not require additional Markov Chain Monte Carlo (MCMC) sampling and is not dependent on the type of MCMC scheme used to sample from the posterior. The proposed approach is applied to normal regression models, finite normal mixtures and longitudinal Poisson models, and leads to accurate marginal likelihood estimates.
Habitat selection models are used in ecology to link the distribution of animals to environmental covariates, and identify habitats that are important for conservation. The most widely used models of this type, resource selection functions, assume independence between the observed locations of an animal. This is unrealistic when location data display spatio-temporal autocorrelation. Alternatively, step selection functions embed habitat selection in a model of animal movement, to account for the autocorrelation. However, inferences from step selection functions depend on the movement model, and…
Sequential state estimation in non-linear and non-Gaussian state spaces has a wide range of applications in statistics and signal processing. One of the most effective non-linear filtering approaches, particle filtering, suffers from weight degeneracy in high-dimensional filtering scenarios. Several avenues have been pursued to address high-dimensionality. Among these, particle flow particle filters construct effective proposal distributions by using invertible flow to migrate particles continuously from the prior distribution to the posterior, and sequential Markov chain Monte Carlo (SMCMC) m…
I show how any reversible Markov chain on a finite state space that is irreducible, and hence suitable for estimating expectations with respect to its invariant distribution, can be used to construct a non-reversible Markov chain on a related state space that can also be used to estimate these expectations, with asymptotic variance at least as small as that using the reversible chain (typically smaller). The non-reversible chain achieves this improvement by avoiding (to the extent possible) transitions that backtrack to the state from which the chain just came. The proof that this modification…
The analysis of large scale medical claims data has the potential to improve quality of care by generating insights which can be used to create tailored medical programs. In particular, the multivariate probit model can be used to investigate the correlation between multiple binary responses of interest in such data, e.g. the presence of multiple chronic conditions. Bayesian modeling is well suited to such analyses because of the automatic uncertainty quantification provided by the posterior distribution. A complicating factor is that large medical claims datasets often do not fit in memory, w…
Label switching is a well-known and fundamental problem in Bayesian estimation of mixture or hidden Markov models. In case that the prior distribution of the model parameters is the same for all states, then both the likelihood and posterior distribution are invariant to permutations of the parameters. This property makes Markov chain Monte Carlo (MCMC) samples simulated from the posterior distribution non-identifiable. In this paper, the \pkg{label.switching} package is introduced. It contains one probabilistic and seven deterministic relabelling algorithms in order to post-process a given MC…
Markov Chain Monte Carlo (MCMC) requires to evaluate the full data likelihood at different parameter values iteratively and is often computationally infeasible for large data sets. In this paper, we propose to approximate the log-likelihood with subsamples taken according to nonuniform subsampling probabilities, and derive the most likely optimal (MLO) subsampling probabilities for better approximation. Compared with existing subsampled MCMC algorithm with equal subsampling probabilities, our MLO subsampled MCMC has a higher estimation efficiency with the same subsampling ratio. We also derive…
Monte Carlo (MC) methods are widely used for Bayesian inference and optimization in statistics, signal processing and machine learning. A well-known class of MC methods are Markov Chain Monte Carlo (MCMC) algorithms. In order to foster better exploration of the state space, specially in high-dimensional applications, several schemes employing multiple parallel MCMC chains have been recently introduced. In this work, we describe a novel parallel interacting MCMC scheme, called {\it orthogonal MCMC} (O-MCMC), where a set of "vertical" parallel MCMC chains share information using some "horizontal…
We present a Bayesian sampling algorithm called adaptive importance sampling or Population Monte Carlo (PMC), whose computational workload is easily parallelizable and thus has the potential to considerably reduce the wall-clock time required for sampling, along with providing other benefits. To assess the performance of the approach for cosmological problems, we use simulated and actual data consisting of CMB anisotropies, supernovae of type Ia, and weak cosmological lensing, and provide a comparison of results to those obtained using state-of-the-art Markov Chain Monte Carlo (MCMC). For both…
It is commonly admitted that non-reversible Markov chain Monte Carlo (MCMC) algorithms usually yield more accurate MCMC estimators than their reversible counterparts. In this note, we show that in addition to their variance reduction effect, some non-reversible MCMC algorithms have also the undesirable property to slow down the convergence of the Markov chain. This point, which has been overlooked by the literature, has obvious practical implications. We illustrate this phenomenon for different non-reversible versions of the Metropolis-Hastings algorithm on several discrete state space example…
We present a novel method for reducing the computational complexity of rigorously estimating the partition functions (normalizing constants) of Gibbs (Boltzmann) distributions, which arise ubiquitously in probabilistic graphical models. A major obstacle to practical applications of Gibbs distributions is the need to estimate their partition functions. The state of the art in addressing this problem is multi-stage algorithms, which consist of a cooling schedule, and a mean estimator in each step of the schedule. While the cooling schedule in these algorithms is adaptive, the mean estimation com…
An MCMC simulation method based on a two stage delayed rejection Metropolis-Hastings algorithm is proposed to estimate a factor multivariate stochastic volatility model. The first stage uses kstep iteration towards the mode, with k small, and the second stage uses an adaptive random walk proposal density. The marginal likelihood approach of Chib (1995) is used to choose the number of factors, with the posterior density ordinates approximated by Gaussian copula. Simulation and real data applications suggest that the proposed simulation method is computationally much more efficient than the appr…
UC Berkeley Computer Science（加州大学伯克利分校计算机科学系）；Technical University of Denmark（丹麦技术大学）
We propose a new class of learning algorithms that combines variational approximation and Markov chain Monte Carlo (MCMC) simulation. Naive algorithms that use the variational approximation as proposal distribution can perform poorly because this approximation tends to underestimate the true variance and other features of the data. We solve this problem by introducing more sophisticated MCMC algorithms. One of these algorithms is a mixture of two MCMC kernels: a random walk Metropolis kernel and a blockMetropolis-Hastings (MH) kernel with a variational approximation as proposaldistribution. Th…
In this paper we examine the implications of the statistical large sample theory for the computational complexity of Bayesian and quasi-Bayesian estimation carried out using Metropolis random walks. Our analysis is motivated by the Laplace-Bernstein-Von Mises central limit theorem, which states that in large samples the posterior or quasi-posterior approaches a normal density. Using the conditions required for the central limit theorem to hold, we establish polynomial bounds on the computational complexity of general Metropolis random walks methods in large samples. Our analysis covers cases w…
