arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 1608.07019cs.LGstat.ML
收藏

基于随机投影的降维方法在癌症分类中的比较

Comparison among dimensionality reduction techniques based on Random Projection for cancer classification

Harbin Institute of Technology(哈尔滨工业大学)

Haozhe Xie, Jie Li, Qiaosheng Zhang, Yadong Wang

摘要:

随机投影(Random Projection,RP)技术能够在较短时间内将高维特征降维到低维空间,满足海量数据实时分析的需要,在很多场景中得到了广泛应用。随着基因组数据的快速增长,对数据降维的需求越来越迫切。然而,RP的性能通常较低。我们尝试通过结合其他降维方法,如主成分分析(PCA),线性判别分析(LDA),和特征选择(FS),以提高RP的分类精度。我们在三个微阵列数据集和一个模拟数据集上比较了不同组合方法的分类精度和运行时间。实验结果表明,在BC-TCGA数据集上,FS后RP的分类精度比RP提高了14.77%。LDA之后是RP也有助于RP产生更具鉴别力的子空间,在相同数据集上的分类准确率提高了13.65%。在大多数数据集上,FS其次是RP的分类精度优于其他组合方法。

英文摘要:

Random Projection (RP) technique has been widely applied in many scenarios because it can reduce high-dimensional features into low-dimensional space within short time and meet the need of real-time analysis of massive data. There is an urgent need of dimensionality reduction with fast increase of big genomics data. However, the performance of RP is usually lower. We attempt to improve classification accuracy of RP through combining other reduction dimension methods such as Principle Component Analysis (PCA), Linear Discriminant Analysis (LDA), and Feature Selection (FS). We compared classification accuracy and running time of different combination methods on three microarray datasets and a simulation dataset. Experimental results show a remarkable improvement of 14.77% in classification accuracy of FS followed by RP compared to RP on BC-TCGA dataset. LDA followed by RP also helps RP to yield a more discriminative subspace with an increase of 13.65% on classification accuracy on the same dataset. FS followed by RP outperforms other combination methods in classification accuracy on most of the datasets.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

↑