We present a global optimization algorithm for clustering data given the ratio of likelihoods that each pair of data points is in the same cluster or in different clusters. To define a clustering solution in terms of pairwise relationships, a necessary and sufficient condition is that belonging to the same cluster satisfies transitivity. We define a global objective function based on pairwise likelihood ratios and a transitivity constraint over all triples, assigning an equal prior probability to all clustering solutions. We maximize the objective function by implementing max-sum message passing on the corresponding factor graph to arrive at an O(N^3) algorithm. Lastly, we demonstrate an application inspired by mutational sequencing for decoding random binary words transmitted through a noisy channel.
The development of autonomous vehicles requires having access to a large amount of data in the concerning driving scenarios. However, manual annotation of such driving scenarios is costly and subject to the errors in the rule-based trajectory labeling systems. To address this issue, we propose an effective non-parametric trajectory clustering framework consisting of five stages: (1) aligning trajectories and quantifying their pairwise temporal dissimilarities, (2) embedding the trajectory-based dissimilarities into a vector space, (3) extracting transitive relations, (4) embedding the transiti…
Yale University（耶鲁大学）；Massachusetts Institute of Technology（麻省理工学院）；University of California, Irvine（加州大学欧文分校）
In the era of single-cell sequencing, there is a growing need to extract insights from data with clustering methods. Here, we introduce Forest Fire Clustering, an efficient and interpretable method for cell-type discovery from single-cell data. Forest Fire Clustering makes minimal prior assumptions and, different from current approaches, calculates a non-parametric posterior probability that each cell is assigned a cell-type label. These posterior distributions allow for the evaluation of a label confidence for each cell and enable the computation of "label entropies," highlighting transitions…
Clustering Based on Density Propagation and Subcluster Merging
School of Artificial Intelligence, OPtics and ElectroNics (iOPEN)（人工智能、光学与电子学院（iOPEN））；School of Computer Science（计算机学院）；Northwestern Polytechnical University（西北工业大学）
University of Electronic Science and Technology of China（电子科技大学）
A recently proposed clustering method, called the Nearest Descent (ND), can organize the whole dataset into a sparsely connected graph, called the In-tree. This ND-based Intree structure proves able to reveal the clustering structure underlying the dataset, except one imperfect place, that is, there are some undesired edges in this In-tree which require to be removed. Here, we propose an effective way to automatically remove the undesired edges in In-tree via an effective combination of the In-tree structure with affinity propagation (AP). The key for the combination is to add edges between th…
We develop a framework for approximating collapsed Gibbs sampling in generative latent variable cluster models. Collapsed Gibbs is a popular MCMC method, which integrates out variables in the posterior to improve mixing. Unfortunately for many complex models, integrating out these variables is either analytically or computationally intractable. We efficiently approximate the necessary collapsed Gibbs integrals by borrowing ideas from expectation propagation. We present two case studies where exact collapsed Gibbs sampling is intractable: mixtures of Student-t's and time series clustering. Our …
University of Science and Technology of China（中国科学技术大学）
Clustering by fast search and find of density peaks (DPC) (Since, 2014) has been proven to be a promising clustering approach that efficiently discovers the centers of clusters by finding the density peaks. The accuracy of DPC depends on the cutoff distance ($d_c$), the cluster number ($k$) and the selection of the centers of clusters. Moreover, the final allocation strategy is sensitive and has poor fault tolerance. The shortcomings above make the algorithm sensitive to parameters and only applicable for some specific datasets. To overcome the limitations of DPC, this paper presents an improv…
Towards Robust and Scalable Density-based Clustering via Graph Propagation
School of Computer Science, University of Auckland, New Zealand（奥克兰大学计算机科学学院）；Department of Mathematics and Computer Science, University of Southern Denmark, Denmark（丹麦南部大学数学与计算机科学系）
Clustering data into meaningful subsets is a major task in scientific data analysis. To date, various strategies ranging from model-based approaches to data-driven schemes, have been devised for efficient and accurate clustering. One important class of clustering methods that is of a particular interest is the class of exemplar-based approaches. This interest primarily stems from the amount of compressed information encoded in these exemplars that effectively reflect the major characteristics of the respective clusters. Affinity propagation (AP) has proven to be a powerful exemplar-based appro…
South China Agricultural University（华南农业大学）；Nanyang Technological University（南洋理工大学）；Sun Yat-sen University（中山大学）
Ensemble clustering has been a popular research topic in data mining and machine learning. Despite its significant progress in recent years, there are still two challenging issues in the current ensemble clustering research. First, most of the existing algorithms tend to investigate the ensemble information at the object-level, yet often lack the ability to explore the rich information at higher levels of granularity. Second, they mostly focus on the direct connections (e.g., direct intersection or pair-wise co-occurrence) in the multiple base clusterings, but generally neglect the multi-scale…
Deep models have improved state-of-the-art for both supervised and unsupervised learning. For example, deep embedded clustering (DEC) has greatly improved the unsupervised clustering performance, by using stacked autoencoders for representation learning. However, one weakness of deep modeling is that the local neighborhood structure in the original space is not necessarily preserved in the latent space. To preserve local geometry, various methods have been proposed in the supervised and semi-supervised learning literature (e.g., spectral clustering and label propagation) using graph Laplacian …
Federal University of Rio Grande do Sul（南里奥格兰德联邦大学）
Accident grouping is a crucial step in identifying accident-prone locations. Among the different accident grouping modes, clustering methods present excellent performance for discovering different distributions of accidents in space. This work introduces the Affinity Propagation Clustering (APC) approach for grouping traffic accidents based on criteria of similarity and dissimilarity between distributions of data points in space. The APC provides more realistic representations of the distribution of events from similarity matrices between instances. The results showed that when representative …
Massachusetts Institute of Technology（麻省理工学院）；Institute of Informatics and Telematics of CNR（意大利国家研究委员会信息与电信研究所）；The University of Melbourne（墨尔本大学）
The VAT method is a visual technique for determining the potential cluster structure and the possible number of clusters in numerical data. Its improved version, iVAT, uses a path-based distance transform to improve the effectiveness of VAT for "tough" cases. Both VAT and iVAT have also been used in conjunction with a single-linkage(SL) hierarchical clustering algorithm. However, they are sensitive to noise and bridge points between clusters in the dataset, and consequently, the corresponding VAT/iVAT images are often in-conclusive for such cases. In this paper, we propose a constraint-based v…
Affinity propagation is one of the most effective unsupervised pattern recognition algorithms for data clustering in high-dimensional feature space. However, the numerous attempts to test its performance for community detection in complex networks have been attaining results very far from the state of the art methods such as Infomap and Louvain. Yet, all these studies agreed that the crucial problem is to convert the unweighted network topology in a 'smart-enough' node dissimilarity matrix that is able to properly address the message passing procedure behind affinity propagation clustering. He…
The development of algorithms for unsupervised pattern recognition by nonlinear clustering is a notable problem in data science. Markov clustering (MCL) is a renowned algorithm that simulates stochastic flows on a network of sample similarities to detect the structural organization of clusters in the data, but it has never been generalized to deal with data nonlinearity. Minimum Curvilinearity (MC) is a principle that approximates nonlinear sample distances in the high-dimensional feature space by curvilinear distances, which are computed as transversal paths over their minimum spanning tree, …
We are often interested in clustering objects that evolve over time and identifying solutions to the clustering problem for every time step. Evolutionary clustering provides insight into cluster evolution and temporal changes in cluster memberships while enabling performance superior to that achieved by independently clustering data collected at different time points. In this paper we introduce evolutionary affinity propagation (EAP), an evolutionary clustering algorithm that groups data points by exchanging messages on a factor graph. EAP promotes temporal smoothness of the solution to cluste…
Graph Neural Networks (GNNs) for prediction tasks like node classification or edge prediction have received increasing attention in recent machine learning from graphically structured data. However, a large quantity of labeled graphs is difficult to obtain, which significantly limits the true success of GNNs. Although active learning has been widely studied for addressing label-sparse issues with other data types like text, images, etc., how to make it effective over graphs is an open question for research. In this paper, we present an investigation on active learning with GNNs for node classi…
Duke University（杜克大学）；University of Minnesota-Twin Cities（明尼苏达大学双城分校）
Motivated by the ever-increasing demands for limited communication bandwidth and low-power consumption, we propose a new methodology, named joint Variational Autoencoders with Bernoulli mixture models (VAB), for performing clustering in the compressed data domain. The idea is to reduce the data dimension by Variational Autoencoders (VAEs) and group data representations by Bernoulli mixture models (BMMs). Once jointly trained for compression and clustering, the model can be decomposed into two parts: a data vendor that encodes the raw data into compressed data, and a data consumer that classifi…
We propose a new clustering algorithm, Extended Affinity Propagation, based on pairwise similarities. Extended Affinity Propagation is developed by modifying Affinity Propagation such that the desirable features of Affinity Propagation, e.g., exemplars, reasonable computational complexity and no need to specify number of clusters, are preserved while the shortcomings, e.g., the lack of global structure discovery, that limit the applicability of Affinity Propagation are overcome. Extended Affinity Propagation succeeds not only in achieving this goal but can also provide various additional insig…
Bocconi Institute for Data Science and Analytics（博科尼数据科学与分析研究所）；Bocconi University（博科尼大学）
Message-passing algorithms based on the Belief Propagation (BP) equations constitute a well-known distributed computational scheme. It is exact on tree-like graphical models and has also proven to be effective in many problems defined on graphs with loops (from inference to optimization, from signal processing to clustering). The BP-based scheme is fundamentally different from stochastic gradient descent (SGD), on which the current success of deep networks is based. In this paper, we present and adapt to mini-batch training on GPUs a family of BP-based message-passing algorithms with a reinfor…
Fast and Scalable Semi-Supervised Learning for Multi-View Subspace Clustering
Tsinghua University（清华大学）；Yau Mathematical Sciences Center, Tsinghua University（清华大学丘成桐数学科学中心）；Beijing Institute of Mathematical Sciences and Applications（北京数学科学与应用研究院）
Conversational systems are of primary interest in the AI community. Chatbots are increasingly being deployed to provide round-the-clock support and to increase customer engagement. Many of the commercial bot building frameworks follow a standard approach that requires one to build and train an intent model to recognize a user input. Intent models are trained in a supervised setting with a collection of textual utterance and intent label pairs. Gathering a substantial and wide coverage of training data for different intent is a bottleneck in the bot building process. Moreover, the cost of label…
Spectral methods offer a tractable, global framework for clustering in graphs via eigenvector computations on graph matrices. Hypergraph data, in which entities interact on edges of arbitrary size, poses challenges for matrix representations and therefore for spectral clustering. We study spectral clustering for nonuniform hypergraphs based on the hypergraph nonbacktracking operator. After reviewing the definition of this operator and its basic properties, we prove a theorem of Ihara-Bass type which allows eigenpair computations to take place on a smaller matrix, often enabling faster computat…
University of Central Florida（中佛罗里达大学）；Purdue University（普渡大学）
Classification and clustering have been studied separately in machine learning and computer vision. Inspired by the recent success of deep learning models in solving various vision problems (e.g., object recognition, semantic segmentation) and the fact that humans serve as the gold standard in assessing clustering algorithms, here, we advocate for a unified treatment of the two problems and suggest that hierarchical frameworks that progressively build complex patterns on top of the simpler ones (e.g., convolutional neural networks) offer a promising solution. We do not dwell much on the learni…
Dual-Segment Clustering Strategy for Hierarchical Federated Learning in Heterogeneous Wireless Environments
College of Electronics and Information Engineering, Tongji University（同济大学电子与信息工程学院）；Tongji Hospital, Tongji University（同济大学附属同济医院）；Data61, CSIRO（澳大利亚联邦科学与工业研究组织Data61研究院）；Guangzhou Huatu Information Technology Co., Ltd.（广州华图信息技术有限公司）；School of Electrical and Computer Engineering, The University of Sydney（悉尼大学电气与计算机工程学院）
