基因改良的BarraCUDA
Genetically Improved BarraCUDA
摘要：
BarraCUDA是一个C程序，它使用BWA算法与nVidia CUDA并行，将短的下一代DNA序列与参考基因组进行比对。遗传改良（GI）代码在来自1000个基因组项目的短配对末端读取上快了三倍，在短的BioPlanet.com GCAT比对基准上准确率提高了60%。在单个K80 Tesla GPU上运行的Barracuda可以比对短的成对端nextgen序列，速度比12核CPU上的bwa快10倍。
英文摘要：
BarraCUDA is a C program which uses the BWA algorithm in parallel with nVidia CUDA to align short next generation DNA sequences against a reference genome. The genetically improved (GI) code is up to three times faster on short paired end reads from The 1000 Genomes Project and 60percent more accurate on a short BioPlanet.com GCAT alignment benchmark. GPGPU Barracuda running on a single K80 Tesla GPU can align short paired end nextgen sequences up to ten times faster than bwa on a 12 core CPU.
机构、总结、中文摘要均由AI分析而来，可能存在错误，请以论文正文为准。
