A natural Bayesian approach for mixture models with an unknown number of components is to take the usual finite mixture model with Dirichlet weights, and put a prior on the number of components---that is, to use a mixture of finite mixtures (MFM). While inference in MFMs can be done with methods such as reversible jump Markov chain Monte Carlo, it is much more common to use Dirichlet process mixture (DPM) models because of the relative ease and generality with which DPM samplers can be applied. In this paper, we show that, in fact, many of the attractive mathematical properties of DPMs are also exhibited by MFMs---a simple exchangeable partition distribution, restaurant process, random measure representation, and in certain cases, a stick-breaking representation. Consequently, the powerful methods developed for inference in DPMs can be directly applied to MFMs as well. We illustrate with simulated and real data, including high-dimensional gene expression data.
This paper deals with Bayesian inference of a mixture of Gaussian distributions. A novel formulation of the mixture model is introduced, which includes the prior constraint that each Gaussian component is always assigned a minimal number of data points. This enables noninformative improper priors such as the Jeffreys prior to be placed on the component parameters. We demonstrate difficulties involved in specifying a prior for the standard Gaussian mixture model, and show how the new model can be used to overcome these. MCMC methods are given for efficient sampling from the posterior of this mo…
One of the main approaches used to construct prior distributions for objective Bayes methods is the concept of random imaginary observations. Under this setup, the expected-posterior prior (EPP) offers several advantages, among which it has a nice and simple interpretation and provides an effective way to establish compatibility of priors among models. In this paper, we study the power-expected posterior prior as a generalization to the EPP in objective Bayesian model selection under normal linear models. We prove that it can be represented as a mixture of $g$-prior, like a wide range of prior…
When using mixture models it may be the case that the modeller has a-priori beliefs or desires about what the components of the mixture should represent. For example, if a mixture of normal densities is to be fitted to some data, it may be desirable for components to focus on capturing differences in location rather than scale. We introduce a framework called proximity penalty priors (PPPs) that allows this preference to be made explicit in the prior information. The approach is scale-free and imposes minimal restrictions on the posterior; in particular no arbitrary thresholds need to be set. …
Choosing the number of mixture components remains an elusive challenge. Model selection criteria can be either overly liberal or conservative and return poorly-separated components of limited practical use. We formalize non-local priors (NLPs) for mixtures and show how they lead to well-separated components with non-negligible weight, interpretable as distinct subpopulations. We also propose an estimator for posterior model probabilities under local and non-local priors, showing that Bayes factors are ratios of posterior to prior empty-cluster probabilities. The estimator is widely applicable …
We propose a prior distribution for the number of components of a finite mixture model. The novelty is that the prior distribution is obtained by considering the loss one would incur if the true value representing the number of components were not considered. The prior has an elegant and easy to implement structure, which allows to naturally include any prior information one may have as well as to opt for a default solution in cases where this information is not available. The performance of the prior, and comparison with existing alternatives, is studied through the analysis of both real and …
A new approach on the joint estimation of partially exchangeable observations is presented by constructing pairwise dependence between $m$ random density functions, each of which is modeled as a mixture of geometric stick breaking processes. This approach is based on a new random central masses version of the Pairwise Dependent Dirichlet Process prior mixture model (PDDP) first introduced in Hatjispyros et al. (2011). The idea is to create pairwise dependence through random measures that are location-preserving-expectations of Dirichlet random measures. Our contention is that mixture modeling …
We propose an objective Bayesian approach to the selection of covariates and their penalised splines transformations in generalised additive models. Specification of a reasonable default prior for the model parameters and combination with a multiplicity-correction prior for the models themselves is crucial for this task. Here we use well-studied and well-behaved continuous mixtures of g-priors as default priors. We introduce the methodology in the normal model and extend it to non-normal exponential families. A simulation study and an application from the literature illustrate the proposed app…
We propose a two-component mixture of a noninformative (diffuse) and an informative prior distribution, weighted through the data in such a way to prefer the first component if a prior-data conflict arises. The data-driven approach for computing the mixture weights makes this class data-dependent. Although rarely used with any theoretical motivation, data-dependent priors are often used for different reasons, and their use has been a lot debated over the last decades. However, our approach is justified in terms of Bayesian inference as an approximation of a hierarchical model and as a conditio…
Mixtures of Zellner's g-priors have been studied extensively in linear models and have been shown to have numerous desirable properties for Bayesian variable selection and model averaging. Several extensions of g-priors to Generalized Linear Models (GLMs) have been proposed in the literature; however, the choice of prior distribution of g and resulting properties for inference have received considerably less attention. In this paper, we unify mixtures of g-priors in GLMs by assigning the truncated Compound Confluent Hypergeometric (tCCH) distribution to 1/(1 + g), which encompasses as special …
In model-based-clustering mixture models are used to group data points into clusters. A useful concept introduced for Gaussian mixtures by Malsiner Walli et al (2016) are sparse finite mixtures, where the prior distribution on the weight distribution of a mixture with $K$ components is chosen in such a way that a priori the number of clusters in the data is random and is allowed to be smaller than $K$ with high probability. The number of cluster is then inferred a posteriori from the data. The present paper makes the following contributions in the context of sparse finite mixture modelling. Fi…
The Dirichlet Process Mixture Model (DPMM) is a Bayesian non-parametric approach widely used for density estimation and clustering. In this manuscript, we study the choice of prior for the variance or precision matrix when Gaussian kernels are adopted. Typically, in the relevant literature, the assessment of mixture models is done by considering observations in a space of only a handful of dimensions. Instead, we are concerned with more realistic problems of higher dimensionality, in a space of up to 20 dimensions. We observe that the choice of prior is increasingly important as the dimensiona…
We develop a prior probability model for temporal Poisson process intensities through structured mixtures of Erlang densities with common scale parameter, mixing on the integer shape parameters. The mixture weights are constructed through increments of a cumulative intensity function which is modeled nonparametrically with a gamma process prior. Such model specification provides a novel extension of Erlang mixtures for density estimation to the intensity estimation setting. The prior model structure supports general shapes for the point process intensity function, and it also enables effective…
While Jeffreys priors usually are well-defined for the parameters of mixtures of distributions, they are not available in closed form. Furthermore, they often are improper priors. Hence, they have never been used to draw inference on the mixture parameters. We study in this paper the implementation and the properties of Jeffreys priors in several mixture settings, show that the associated posterior distributions most often are improper, and then propose a noninformative alternative for the analysis of mixtures.
We develop a flexible Erlang mixture model for survival analysis. The model for the survival density is built from a structured mixture of Erlang densities, mixing on the integer shape parameter with a common scale parameter. The mixture weights are constructed through increments of a distribution function on the positive real line, which is assigned a Dirichlet process prior. The model has a relatively simple structure, balancing flexibility with efficient posterior computation. Moreover, it implies a mixture representation for the hazard function that involves time-dependent mixture weights,…
A new method for the computation of the posterior distribution of the number k of components in a finite mixture is presented. Two aspects of prior specification are also studied: an argument is made for the use of a Poisson(1) distribution as the prior for k; and methods are given for the selection of hyperparameter values in the mixture of normals model, with natural conjugate priors on the components parameters.
We propose Bayesian methods for Gaussian graphical models that lead to sparse and adaptively shrunk estimators of the precision (inverse covariance) matrix. Our methods are based on lasso-type regularization priors leading to parsimonious parameterization of the precision matrix, which is essential in several applications involving learning relationships among the variables. In this context, we introduce a novel type of selection prior that develops a sparse structure on the precision matrix by making most of the elements exactly zero, in addition to ensuring positive definiteness -- thus cond…
A Bayesian approach is used to estimate the covariance matrix of Gaussian data. Ideas from Gaussian graphical models and model selection are used to construct a prior for the covariance matrix that is a mixture over all decomposable graphs. For this prior the probability of each graph size is specified by the user and graphs of equal size are assigned equal probability. Most previous approaches assume that all graphs are equally probable. We show empirically that the prior that assigns equal probability over graph sizes outperforms the prior that assigns equal probability over all graphs, both…
In the framework of Bayesian model-based clustering based on a finite mixture of Gaussian distributions, we present a joint approach to estimate the number of mixture components and identify cluster-relevant variables simultaneously as well as to obtain an identified model. Our approach consists in specifying sparse hierarchical priors on the mixture weights and component means. In a deliberately overfitting mixture model the sparse prior on the weights empties superfluous components during MCMC. A straightforward estimator for the true number of components is given by the most frequent number…
Humans are routinely exposed to mixtures of chemical and other environmental factors, making the quantification of health effects associated with environmental mixtures a critical goal for establishing environmental policy sufficiently protective of human health. The quantification of the effects of exposure to an environmental mixture poses several statistical challenges. It is often the case that exposure to multiple pollutants interact with each other to affect an outcome. Further, the exposure-response relationship between an outcome and some exposures, such as some metals, can exhibit com…
While Jeffreys priors usually are well-defined for the parameters of mixtures of distributions, they are not available in closed form. Furthermore, they often are improper priors. Hence, they have never been used to draw inference on the mixture parameters. The implementation and the properties of Jeffreys priors in several mixture settings are studied. It is shown that the associated posterior distributions most often are improper. Nevertheless, the Jeffreys prior for the mixture weights conditionally on the parameters of the mixture components will be shown to have the property of conservati…
Financial studies require volatility based models which provides useful insights on risks related to investments. Stochastic volatility models are one of the most popular approaches to model volatility in such studies. The asset returns under study may come in multiple clusters which are not captured well assuming standard distributions. Mixture distributions are more appropriate in such situations. In this work, an algorithm is demonstrated which is capable of studying finite mixtures but with unknown number of components. This algorithm uses a Birth-Death process to adjust the number of comp…
Bayesian computation of high dimensional linear regression models with a popular Gaussian scale mixture prior distribution using Markov Chain Monte Carlo (MCMC) or its variants can be extremely slow or completely prohibitive due to the heavy computational cost that grows in the cubic order of p, with p as the number of features. Although a few recently developed algorithms make the computation efficient in presence of a small to moderately large sample size (with the complexity growing in the cubic order of n), the computation becomes intractable when sample size n is also large. In this artic…
We propose a structure of a semiparametric two-component mixture model when one component is parametric and the other is defined through linear constraints on its distribution function. Estimation of a two-component mixture model with an unknown component is very difficult when no particular assumption is made on the structure of the unknown component. A symmetry assumption was used in the literature to simplify the estimation. Such method has the advantage of producing consistent and asymptotically normal estimators, and identifiability of the semiparametric mixture model becomes tractable. S…
We propose a structure of a semiparametric two-component mixture model when one component is parametric and the other is defined through L-moments conditions. Estimation of a two-component mixture model with an unknown component is very difficult when no particular assumption is made on the structure of the unknown component. A previous work was proposed to incorporate a prior linear information concerning the distribution function of the unknown component such as moment constraints. We propose here to incorporate a prior linear information about the quantile function of the unknown component …
Finite mixture and Markov-switching models generalize and, therefore, nest specifications featuring only one component. While specifying priors in the two: the general (mixture) model and its special (single-component) case, it may be desirable to ensure that the prior assumptions introduced into both structures are coherent in the sense that the prior distribution in the nested model amounts to the conditional prior in the mixture model under relevant parametric restriction. The study provides the rudiments of setting coherent priors in Bayesian univariate finite mixture and Markov-switching …
Patra and Sen (2016) consider a two-component mixture model, where one component plays the role of background while the other plays the role of signal, and propose to estimate the background component by simply "maximizing" its weight. While in their work the background component is a completely known distribution, we extend their approach here to three emblematic settings: when the background distribution is symmetric; when it is monotonic; and when it is log-concave. In each setting, we derive estimators for the background component, establish consistency, and provide a confidence band. Whil…
We propose Dirichlet Process Mixture (DPM) models for prediction and cluster-wise variable selection, based on two choices of shrinkage baseline prior distributions for the linear regression coefficients, namely the Horseshoe prior and Normal-Gamma prior. We show in a simulation study that each of the two proposed DPM models tend to outperform the standard DPM model based on the non-shrinkage normal prior, in terms of predictive, variable selection, and clustering accuracy. This is especially true for the Horseshoe model, and when the number of covariates exceeds the within-cluster sample size…
In this paper, we show how a complete and exact Bayesian analysis of a parametric mixture model is possible in some cases when components of the mixture are taken from exponential families and when conjugate priors are used. This restricted set-up allows us to show the relevance of the Bayesian approach as well as to exhibit the limitations of a complete analysis, namely that it is impossible to conduct this analysis when the sample size is too large, when the data are not from an exponential family, or when priors that are more complex than conjugate priors are used.
While mixtures of Gaussian distributions have been studied for more than a century (Pearson, 1894), the construction of a reference Bayesian analysis of those models still remains unsolved, with a general prohibition of the usage of improper priors (Fruwirth-Schnatter, 2006) due to the ill-posed nature of such statistical objects. This difficulty is usually bypassed by an empirical Bayes resolution (Richardson and Green, 1997). By creating a new parameterisation cantered on the mean and possibly the variance of the mixture distribution itself, we manage to develop here a weakly informative pri…
We study location-scale mixture priors for nonparametric statistical problems, including multivariate regression, density estimation and classification. We show that a rate-adaptive procedure can be obtained if the prior is properly constructed. In particular, we show that adaptation is achieved if a kernel mixture prior on a regression function is constructed using a Gaussian kernel, an inverse gamma bandwidth, and Gaussian mixing weights.
We consider the problem of spatially dependent areal data, where for each area independent observations are available, and propose to model the density of each area through a finite mixture of Gaussian distributions. The spatial dependence is introduced via a novel joint distribution for a collection of vectors in the simplex, that we term logisticMCAR. We show that salient features of the logisticMCAR distribution can be described analytically, and that a suitable augmentation scheme based on the Pólya-Gamma identity allows to derive an efficient Markov Chain Monte Carlo algorithm. When compa…
Estimation of the covariance matrix for high-dimensional multivariate datasets is a challenging and important problem in modern statistics. In this paper, we focus on high-dimensional Gaussian DAG models where sparsity is induced on the Cholesky factor L of the inverse covariance matrix. In recent work, ([Cao, Khare, and Ghosh, 2019]), we established high-dimensional sparsity selection consistency for a hierarchical Bayesian DAG model, where an Erdos-Renyi prior is placed on the sparsity pattern in the Cholesky factor L, and a DAG-Wishart prior is placed on the resulting non-zero Cholesky entr…
This paper provides a framework for estimating the mean and variance of a high-dimensional normal density. The main setting considered is a fixed number of vector following a high-dimensional normal distribution with unknown mean and diagonal covariance matrix. The diagonal covariance matrix can be known or unknown. If the covariance matrix is unknown, the sample size can be as small as $2$. The proposed estimator is based on the idea that the unobserved pairs of mean and variance for each dimension are drawn from an unknown bivariate distribution, which we model as a mixture of normal-inverse…
We assume that a high-dimensional datum, like an image, is a compositional expression of a set of properties, with a complicated non-linear relationship between the datum and its properties. This paper proposes a factorial mixture prior for capturing latent properties, thereby adding structured compositionality to deep generative models. The prior treats a latent vector as belonging to Cartesian product of subspaces, each of which is quantized separately with a Gaussian mixture model. Some mixture components can be set to represent properties as observed random variables whenever labeled prope…
Estimation of the number of components (or order) of a finite mixture model is a long standing and challenging problem in statistics. We propose the Group-Sort-Fuse (GSF) procedure -- a new penalized likelihood approach for simultaneous estimation of the order and mixing measure in multidimensional finite mixture models. Unlike methods which fit and compare mixtures with varying orders using criteria involving model complexity, our approach directly penalizes a continuous function of the model parameters. More specifically, given a conservative upper bound on the order, the GSF groups and sort…
Brown's 1971 paper "Admissible estimators, recurrent diffusions and insoluble boundary value problems" is a landmark in the admissibility literature. It nearly completely settles the issue of admissibility/inadmissibility for estimating the mean of a multivariate normal distribution with identity covariance under sum of squared error loss. We revisit this wonderful tour de force on its 50th anniversary and present an alternative and more direct proof of the result for generalized Bayes estimators corresponding to priors which are a subclass of scale mixtures of spherical normals.
This article establishes general conditions for posterior consistency of Bayesian finite mixture models with a prior on the number of components. That is, we provide sufficient conditions under which the posterior concentrates on neighborhoods of the true parameter values when the data are generated from a finite mixture over the assumed family of component distributions. Specifically, we establish almost sure consistency for the number of components, the mixture weights, and the component parameters, up to a permutation of the component labels. The approach taken here is based on Doob's theor…
Fudan University（复旦大学）；Shanghai Institute of Intelligent Electronics & Systems（上海智能电子与系统研究院）
Humans perceive the seemingly chaotic world in a structured and compositional way with the prerequisite of being able to segregate conceptual entities from the complex visual scenes. The mechanism of grouping basic visual elements of scenes into conceptual entities is termed as perceptual grouping. In this work, we propose a new type of spatial mixture models with learnable priors for perceptual grouping. Different from existing methods, the proposed method disentangles the attributes of an object into ``shape'' and ``appearance'' which are modeled separately by the mixture weights and the mix…
When constructing a Bayesian Machine Learning model, we might be faced with multiple different prior distributions and thus are required to properly consider them in a sensible manner in our model. While this situation is reasonably well explored for classical Bayesian Statistics, it appears useful to develop a corresponding method for complex Machine Learning problems. Given their underlying Bayesian framework and their widespread popularity, Gaussian Processes are a good candidate to tackle this task. We therefore extend the idea of Mixture models for Gaussian Process regression in order to …
We show that rate-adaptive multivariate density estimation can be performed using Bayesian methods based on Dirichlet mixtures of normal kernels with a prior distribution on the kernel's covariance matrix parameter. We derive sufficient conditions on the prior specification that guarantee convergence to a true density at a rate that is optimal minimax for the smoothness class to which the true density belongs. No prior knowledge of smoothness is assumed. The sufficient conditions are shown to hold for the Dirichlet location mixture of normals prior with a Gaussian base measure and an inverse-W…
This paper adopts a Bayesian nonparametric mixture model where the mixing distribution belongs to the wide class of normalized homogeneous completely random measures. We propose a truncation method for the mixing distribution by discarding the weights of the unnormalized measure smaller than a threshold. We prove convergence in law of our approximation, provide some theoretical properties and characterize its posterior distribution so that a blocked Gibbs sampler is devised. The versatility of the approximation is illustrated by two different applications. In the first the normalized Bessel ra…
