Inthischapterwediscusshowtolearnanoptimalmanifoldpresentationto regularize nonegative matrix factorization (NMF) for data representation problems. NMF,whichtriestorepresentanonnegativedatamatrixasaproductoftwolowrank nonnegative matrices, has been a popular method for data representation due to its ability to explore the latent part-based structure of data. Recent study shows that lots of data distributions have manifold structures, and we should respect the manifold structure when the data are represented. Recently, manifold regularized NMF used a nearest neighbor graph to regulate the learning of factorization parameter matrices and has shown its advantage over traditional NMF methods for data representation problems. However, how to construct an optimal graph to present the manifold prop- erly remains a difficultproblem due to the graph modelselection, noisy features, and nonlinear distributed data. In this chapter, we introduce three effective methods to solve these problems of graph construction for manifold regularized NMF. Multiple graph learning is proposed to solve the problem of graph model selection, adaptive graph learning via feature selection is proposed to solve the problem of constructing a graph from noisy features, while multi-kernel learning-based graph construction is used to solve the problem of learning a graph from nonlinearly distributed data.
Nonnegative Matrix Factorization (NMF) is a widely used technique for data representation. Inspired by the expressive power of deep learning, several NMF variants equipped with deep architectures have been proposed. However, these methods mostly use the only nonnegativity while ignoring task-specific features of data. In this paper, we propose a novel deep approximately orthogonal nonnegative matrix factorization method where both nonnegativity and orthogonality are imposed with the aim to perform a hierarchical clustering by using different level of abstractions of data. Experiment on two fac…
A convergent algorithm for nonnegative matrix factorization with orthogonality constraints imposed on both factors is proposed in this paper. This factorization concept was first introduced by Ding et al. with intent to further improve clustering capability of NMF. However, as the original algorithm was developed based on multiplicative update rules, the convergence of the algorithm cannot be guaranteed. In this paper, we utilize the technique presented in our previous work to develop the algorithm and prove that it converges to a stationary point inside the solution space.
Online nonnegative matrix factorization (ONMF) is a matrix factorization technique in the online setting where data are acquired in a streaming fashion and the matrix factors are updated each time. This enables factor analysis to be performed concurrently with the arrival of new data samples. In this article, we demonstrate how one can use online nonnegative matrix factorization algorithms to learn joint dictionary atoms from an ensemble of correlated data sets. We propose a temporal dictionary learning scheme for time-series data sets, based on ONMF algorithms. We demonstrate our dictionary l…
Grad. School of Information Science and Technology, Hokkaido University（北海道大学信息科学与技术研究生院）
This paper provides a theoretical explanation on the clustering aspect of nonnegative matrix factorization (NMF). We prove that even without imposing orthogonality nor sparsity constraint on the basis and/or coefficient matrix, NMF still can give clustering results, thus providing a theoretical support for many works, e.g., Xu et al. [1] and Kim et al. [2], that show the superiority of the standard NMF as a clustering method.
Fully unsupervised topic models have found fantastic success in document clustering and classification. However, these models often suffer from the tendency to learn less-than-meaningful or even redundant topics when the data is biased towards a set of features. For this reason, we propose an approach based upon the nonnegative matrix factorization (NMF) model, deemed \textit{Guided NMF}, that incorporates user-designed seed word supervision. Our experimental results demonstrate the promise of this model and illustrate that it is competitive with other methods of this ilk with only very little…
Traditional NMF-based signal decomposition relies on the factorization of spectral data, which is typically computed by means of short-time frequency transform. In this paper we propose to relax the choice of a pre-fixed transform and learn a short-time orthogonal transform together with the factorization. To this end, we formulate a regularized optimization problem reminiscent of conventional NMF, yet with the transform as additional unknown parameters, and design a novel block-descent algorithm enabling to find stationary points of this objective function. The proposed joint transform learni…
In recent years, semi-supervised multi-view nonnegative matrix factorization (MVNMF) algorithms have achieved promising performances for multi-view clustering. While most of semi-supervised MVNMFs have failed to effectively consider discriminative information among clusters and feature alignment from multiple views simultaneously. In this paper, a novel Discriminatively Constrained Semi-Supervised Multi-View Nonnegative Matrix Factorization (DCS^2MVNMF) is proposed. Specifically, a discriminative weighting matrix is introduced for the auxiliary matrix of each view, which enhances the inter-cla…
We present a converged algorithm for Tikhonov regularized nonnegative matrix factorization (NMF). We specially choose this regularization because it is known that Tikhonov regularized least square (LS) is the more preferable form in solving linear inverse problems than the conventional LS. Because an NMF problem can be decomposed into LS subproblems, it can be expected that Tikhonov regularized NMF will be the more appropriate approach in solving NMF problems. The algorithm is derived using additive update rules which have been shown to have convergence guarantee. We equip the algorithm with a…
We introduce a probabilistic model with implicit norm regularization for learning nonnegative matrix factorization (NMF) that is commonly used for predicting missing values and finding hidden patterns in the data, in which the matrix factors are latent variables associated with each data dimension. The nonnegativity constraint for the latent factors is handled by choosing priors with support on the nonnegative subspace, e.g., exponential density or distribution based on exponential function. Bayesian inference procedure based on Gibbs sampling is employed. We evaluate the model on several real…
In this paper, we propose a new method for determining shared features of and measuring the distance between data sets or point clouds. Our approach uses the joint factorization of two data matrices $X_1,X_2$ into non-negative matrices $X_1 = AS_1, X_2 = AS_2$ to derive a similarity measure that determines how well the shared basis $A$ approximates $X_1, X_2$. We also propose a point cloud distance measure built upon this method and the learned factorization. Our method reveals structural differences in both image and text data. Potential applications include classification, detecting plagiari…
Faculty of Computer Science and Information Systems, University of Technology Malaysia（马来西亚理工大学计算机科学与信息系统学院）
This paper provides a theoretical support for clustering aspect of the nonnegative matrix factorization (NMF). By utilizing the Karush-Kuhn-Tucker optimality conditions, we show that NMF objective is equivalent to graph clustering objective, so clustering aspect of the NMF has a solid justification. Different from previous approaches which usually discard the nonnegativity constraints, our approach guarantees the stationary point being used in deriving the equivalence is located on the feasible region in the nonnegative orthant. Additionally, since clustering capability of a matrix decompositi…
The University of Texas Rio Grande Valley（德克萨斯大学里奥格兰德谷分校）；University of California Los Angeles（加州大学洛杉矶分校）
Nonnegative matrix factorization can be used to automatically detect topics within a corpus in an unsupervised fashion. The technique amounts to an approximation of a nonnegative matrix as the product of two nonnegative matrices of lower rank. In this paper, we show this factorization can be combined with regression on a continuous response variable. In practice, the method performs better than regression done after topics are identified and retrains interpretability.
Northeastern University（东北大学）；Stevens Institute of Technology（史蒂文斯理工学院）
Nonnegative matrix factorization (NMF) has been widely used to dimensionality reduction in machine learning. However, the traditional NMF does not properly handle outliers, so that it is sensitive to noise. In order to improve the robustness of NMF, this paper proposes an adaptive weighted NMF, which introduces weights to emphasize the different importance of each data point, thus the algorithmic sensitivity to noisy data is decreased. It is very different from the existing robust NMFs that use a slow growth similarity measure. Specifically, two strategies are proposed to achieve this: fuzzier…
United States Census Bureau（美国人口普查局）；Colorado State University（科罗拉多州立大学）
The nonnegative matrix factorization is a widely used, flexible matrix decomposition, finding applications in biology, image and signal processing and information retrieval, among other areas. Here we present a related matrix factorization. A multi-objective optimization problem finds conical combinations of templates that approximate a given data matrix. The templates are chosen so that as far as possible only the initial data set can be represented this way. However, the templates are not required to be nonnegative nor convex combinations of the original data.
Qingdao University（青岛大学）；Harbin Institute of Technology（哈尔滨工业大学）；University of Electronic Science and Technology of China（电子科技大学）；University of Kentucky（肯塔基大学）
Nonnegative matrix factorization (NMF) has been widely studied in recent years due to its effectiveness in representing nonnegative data with parts-based representations. For NMF, a sparser solution implies better parts-based representation.However, current NMF methods do not always generate sparse solutions.In this paper, we propose a new NMF method with log-norm imposed on the factor matrices to enhance the sparseness.Moreover, we propose a novel column-wisely sparse norm, named $\ell_{2,\log}$-(pseudo) norm to enhance the robustness of the proposed method.The $\ell_{2,\log}$-(pseudo) norm i…
We show how to incorporate information from labeled examples into nonnegative matrix factorization (NMF), a popular unsupervised learning algorithm for dimensionality reduction. In addition to mapping the data into a space of lower dimensionality, our approach aims to preserve the nonnegative components of the data that are important for classification. We identify these components from the support vectors of large-margin classifiers and derive iterative updates to preserve them in a semi-supervised version of NMF. These updates have a simple multiplicative form like their unsupervised counter…
Northeastern University（东北大学）；Stevens Institute of Technology（斯蒂文斯理工学院）
Nonnegative matrix factorization (NMF) has been widely used to learn low-dimensional representations of data. However, NMF pays the same attention to all attributes of a data point, which inevitably leads to inaccurate representation. For example, in a human-face data set, if an image contains a hat on the head, the hat should be removed or the importance of its corresponding attributes should be decreased during matrix factorizing. This paper proposes a new type of NMF called entropy weighted NMF (EWNMF), which uses an optimizable weight for each attribute of each data point to emphasize thei…
Manifold regularization methods for matrix factorization rely on the cluster assumption, whereby the neighborhood structure of data in the input space is preserved in the factorization space. We argue that using the k-neighborhoods of all data points as regularization constraints can negatively affect the quality of the factorization, and propose an unsupervised and selective regularized matrix factorization algorithm to tackle this problem. Our approach jointly learns a sparse set of representatives and their neighbor affinities, and the data factorization. We further propose a fast approxima…
We augment the nonnegative matrix factorization method for audio source separation with cues about directionality of sound propagation. This improves separation quality greatly and removes the need for training data, with only a twofold increase in run time. This is the first method which can exploit directional information from microphone arrays much smaller than the wavelength of sound, working both in simulation and in practice on millimeter-scale microphone arrays.
In this letter, we propose a new identification criterion that guarantees the recovery of the low-rank latent factors in the nonnegative matrix factorization (NMF) model, under mild conditions. Specifically, using the proposed criterion, it suffices to identify the latent factors if the rows of one factor are \emph{sufficiently scattered} over the nonnegative orthant, while no structural assumption is imposed on the other factor except being full-rank. This is by far the mildest condition under which the latent factors are provably identifiable from the NMF model.
University of Science and Technology of China（中国科学技术大学）
Tensor factorization based models have shown great power in knowledge graph completion (KGC). However, their performance usually suffers from the overfitting problem seriously. This motivates various regularizers -- such as the squared Frobenius norm and tensor nuclear norm regularizers -- while the limited applicability significantly limits their practical usage. To address this challenge, we propose a novel regularizer -- namely, DUality-induced RegulArizer (DURA) -- which is not only effective in improving the performance of existing models but widely applicable to various methods. The majo…
National University of Singapore（新加坡国立大学）；IRIT, Université de Toulouse, CNRS（图卢兹大学IRIT实验室、法国国家科学研究中心）
We consider an adversarially-trained version of the nonnegative matrix factorization, a popular latent dimensionality reduction technique. In our formulation, an attacker adds an arbitrary matrix of bounded norm to the given data matrix. We design efficient algorithms inspired by adversarial training to optimize for dictionary and coefficient matrices with enhanced generalization abilities. Extensive simulations on synthetic and benchmark datasets demonstrate the superior predictive performance on matrix completion tasks of our proposed method compared to state-of-the-art competitors, includin…
Identifying recurring patterns in high-dimensional time series data is an important problem in many scientific domains. A popular model to achieve this is convolutive nonnegative matrix factorization (CNMF), which extends classic nonnegative matrix factorization (NMF) to extract short-lived temporal motifs from a long time series. Prior work has typically fit this model by multiplicative parameter updates---an approach widely considered to be suboptimal for NMF, especially in large-scale data applications. Here, we describe how to extend two popular and computationally scalable NMF algorithms-…
Nonnegative matrix factorization (NMF) is a popular dimension reduction technique that produces interpretable decomposition of the data into parts. However, this decompostion is not generally identifiable (even up to permutation and scaling). While other studies have provide criteria under which NMF is identifiable, we present the first (to our knowledge) characterization of the non-identifiability of NMF. We describe exactly when and how non-uniqueness can occur, which has important implications for algorithms to efficiently discover alternate solutions, if they exist.
University of Rochester（罗切斯特大学）；Rochester Institute of Technology（罗切斯特理工学院）
Nonnegative Matrix Factorization (NMF) is an unsupervised learning algorithm that produces a linear, parts-based approximation of a data matrix. NMF constructs a nonnegative low rank basis matrix and a nonnegative low rank matrix of weights which, when multiplied together, approximate the data matrix of interest using some cost function. The NMF algorithm can be modified to include auxiliary constraints which impose task-specific penalties or restrictions on the cost function of the matrix factorization. In this paper we propose a new NMF algorithm that makes use of non-data dependent auxiliar…
School of Mathematical Sciences, Rochester Institute of Technology（罗切斯特理工学院数学科学学院）
Nonnegative matrix factorization (NMF) is a relatively new unsupervised learning algorithm that decomposes a nonnegative data matrix into a parts-based, lower dimensional, linear representation of the data. NMF has applications in image processing, text mining, recommendation systems and a variety of other fields. Since its inception, the NMF algorithm has been modified and explored by numerous authors. One such modification involves the addition of auxiliary constraints to the objective function of the factorization. The purpose of these auxiliary constraints is to impose task-specific penalt…
Motivated by the needs of estimating the proximity clustering with partial distance measurements from vantage points or landmarks for remote networked systems, we show that the proximity clustering problem can be effectively formulated as the Nyström approximation problem, which solves the kernel K-means clustering problem in the complex space. We implement the Nyström approximation based on a landmark based Nonnegative Matrix Factorization (NMF) process. Evaluation results show that the proposed method finds nearly optimal clustering quality on both synthetic and real-world data sets as we va…
We propose a generative model of a group EEG analysis, based on appropriate kernel assumptions on EEG data. We derive the variational inference update rule using various approximation techniques. The proposed model outperforms the current state-of-the-art algorithms in terms of common pattern extraction. The validity of the proposed model is tested on the BCI competition dataset.
NIMFA is an open-source Python library that provides a unified interface to nonnegative matrix factorization algorithms. It includes implementations of state-of-the-art factorization methods, initialization approaches, and quality scoring. It supports both dense and sparse matrix representation. NIMFA's component-based implementation and hierarchical design should help the users to employ already implemented techniques or design and code new strategies for matrix factorization tasks.
Qingdao University（青岛大学）；University of Electronic Science and Technology of China（电子科技大学）；University of Kentucky（肯塔基大学）
Existing nonnegative matrix factorization methods focus on learning global structure of the data to construct basis and coefficient matrices, which ignores the local structure that commonly exists among data. In this paper, we propose a new type of nonnegative matrix factorization method, which learns local similarity and clustering in a mutually enhancing way. The learned new representation is more representative in that it better reveals inherent geometric property of the data. Nonlinear expansion is given and efficient multiplicative updates are developed with theoretical convergence guaran…
Queensland University of Technology（昆士兰科技大学）；Singapore University of Technology and Design（新加坡科技设计大学）
Coupled Matrix Tensor Factorization (CMTF) facilitates the integration and analysis of multiple data sources and helps discover meaningful information. Nonnegative CMTF (N-CMTF) has been employed in many applications for identifying latent patterns, prediction, and recommendation. However, due to the added complexity with coupling between tensor and matrix data, existing N-CMTF algorithms exhibit poor computation efficiency. In this paper, a computationally efficient N-CMTF factorization algorithm is presented based on the column-wise element selection, preventing frequent gradient updates. Th…
We present a general-purpose data compression algorithm, Regularized L21 Semi-NonNegative Matrix Factorization (L21 SNF). L21 SNF provides robust, parts-based compression applicable to mixed-sign data for which high fidelity, individualdata point reconstruction is paramount. We derive a rigorous proof of convergenceof our algorithm. Through experiments, we show the use-case advantages presentedby L21 SNF, including application to the compression of highly overdeterminedsystems encountered broadly across many general machine learning processes.
We introduce a new method based on nonnegative matrix factorization, Neural NMF, for detecting latent hierarchical structure in data. Datasets with hierarchical structure arise in a wide variety of fields, such as document classification, image processing, and bioinformatics. Neural NMF recursively applies NMF in layers to discover overarching topics encompassing the lower-level features. We derive a backpropagation optimization scheme that allows us to frame hierarchical NMF as a neural network. We test Neural NMF on a synthetic hierarchical dataset, the 20 Newsgroups dataset, and the MyLymeD…
Nonnegative matrix factorization (NMF) is a popular model in the field of pattern recognition. It aims to find a low rank approximation for nonnegative data M by a product of two nonnegative matrices W and H. In general, NMF is NP-hard to solve while it can be solved efficiently under separability assumption, which requires the columns of factor matrix are equal to columns of the input matrix. In this paper, we generalize separability assumption based on 3-factor NMF M=P_1SP_2, and require that S is a sub-matrix of the input matrix. We refer to this NMF as a Co-Separable NMF (CoS-NMF). We disc…
Nonnegative Matrix Factorization (NMF) is a widely used technique in many applications such as face recognition, motion segmentation, etc. It approximates the nonnegative data in an original high dimensional space with a linear representation in a low dimensional space by using the product of two nonnegative matrices. In many applications data are often partially corrupted with large additive noise. When the positions of noise are known, some existing variants of NMF can be applied by treating these corrupted entries as missing values. However, the positions are often unknown in many real worl…
A novel approach to Boolean matrix factorization (BMF) is presented. Instead of solving the BMF problem directly, this approach solves a nonnegative optimization problem with the constraint over an auxiliary matrix whose Boolean structure is identical to the initial Boolean data. Then the solution of the nonnegative auxiliary optimization problem is thresholded to provide a solution for the BMF problem. We provide the proofs for the equivalencies of the two solution spaces under the existence of an exact solution. Moreover, the nonincreasing property of the algorithm is also proven. Experiment…
Collaborative filtering based on nonnegative/binary matrix factorization
Department of Computer Science, Ochanomizu University, Tokyo, Japan（东京大学计算机科学系）；Corporate Research and Development Center, Toshiba Corporation, Kawasaki, Japan（东芝公司研发中心）；Graduate School of Information Sciences, Tohoku University, Sendai, Japan（东北大学信息科学研究生院）
In this paper, we introduce a probabilistic model for learning nonnegative matrix factorization (NMF) that is commonly used for predicting missing values and finding hidden patterns in the data, in which the matrix factors are latent variables associated with each data dimension. The nonnegativity constraint for the latent factors is handled by choosing priors with support on the nonnegative subspace. Bayesian inference procedure based on Gibbs sampling is employed. We evaluate the model on several real-world datasets including MovieLens 100K and MovieLens 1M with different sizes and dimension…
Stanford University（斯坦福大学）；Université de Mons（蒙斯大学）
In this paper, we propose a provably correct algorithm for convolutive nonnegative matrix factorization (CNMF) under separability assumptions. CNMF is a convolutive variant of nonnegative matrix factorization (NMF), which functions as an NMF with additional sequential structure. This model is useful in a number of applications, such as audio source separation and neural sequence identification. While a number of heuristic algorithms have been proposed to solve CNMF, to the best of our knowledge no provably correct algorithms have been developed. We present an algorithm that takes advantage of …
LTCI, Institut Polytechnique de Paris, Télécom Paris（巴黎理工学院LTCI、巴黎电信学院）；Smart Impulse（Smart Impulse公司）
We present a new probabilistic model to address semi-nonnegative matrix factorization (SNMF), called Skellam-SNMF. It is a hierarchical generative model consisting of prior components, Skellam-distributed hidden variables and observed data. Two inference algorithms are derived: Expectation-Maximization (EM) algorithm for maximum \emph{a posteriori} estimation and Variational Bayes EM (VBEM) for full Bayesian inference, including the estimation of parameters prior distribution. From this Skellam-based model, we also introduce a new divergence $\mathcal{D}$ between a real-valued target data $x$ …
It was recently shown that quantum annealing can be used as an effective, fast subroutine in certain types of matrix factorization algorithms. The quantum annealing algorithm performed best for quick, approximate answers, but performance rapidly plateaued. In this paper, we utilize reverse annealing instead of forward annealing in the quantum annealing subroutine for nonnegative/binary matrix factorization problems. After an initial global search with forward annealing, reverse annealing performs a series of local searches that refine existing solutions. The combination of forward and reverse …
Criteo AI Lab（Criteo人工智能实验室）；IRIT（图卢兹计算机科学研究所）；Université de Toulouse（图卢兹大学）；CNRS（法国国家科学研究中心）
Binary data matrices can represent many types of data such as social networks, votes, or gene expression. In some cases, the analysis of binary matrices can be tackled with nonnegative matrix factorization (NMF), where the observed data matrix is approximated by the product of two smaller nonnegative matrices. In this context, probabilistic NMF assumes a generative model where the data is usually Bernoulli-distributed. Often, a link function is used to map the factorization to the $[0,1]$ range, ensuring a valid Bernoulli mean parameter. However, link functions have the potential disadvantage …
Uppsala University（乌普萨拉大学）；Research Institutes of Sweden (RISE)（瑞典研究机构（RISE））
We describe a graph-based neural acceleration technique for nonnegative matrix factorization that builds upon a connection between matrices and bipartite graphs that is well-known in certain fields, e.g., sparse linear algebra, but has not yet been exploited to design graph neural networks for matrix computations. We first consider low-rank factorization more broadly and propose a graph representation of the problem suited for graph neural networks. Then, we focus on the task of nonnegative matrix factorization and propose a graph neural network that interleaves bipartite self-attention layers…
Non-negative matrix factorization (NMF) has become a popular method for representing meaningful data by extracting a non-negative basis feature from an observed non-negative data matrix. Some of the unique features of this method in identifying hidden data put this method amongst the powerful methods in the machine learning area. The NMF is a known non-convex optimization problem and the initial point has a significant effect on finding an efficient local solution. In this paper, we investigate the most popular initialization procedures proposed for NMF so far. We describe each method and pres…
Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of high-dimensional data as it automatically extracts sparse and meaningful features from a set of nonnegative data vectors. We first illustrate this property of NMF on three applications, in image processing, text mining and hyperspectral imaging --this is the why. Then we address the problem of solving NMF, which is NP-hard in general. We review some standard NMF algorithms, and also present a recent subclass of NMF problems, referred to as near-separable NMF, that can be solved efficiently (that is, in pol…
Université de Mons（蒙斯大学）；University of Waterloo（滑铁卢大学）
In this paper, we study the nonnegative matrix factorization problem under the separability assumption (that is, there exists a cone spanned by a small subset of the columns of the input nonnegative data matrix containing all columns), which is equivalent to the hyperspectral unmixing problem under the linear mixing model and the pure-pixel assumption. We present a family of fast recursive algorithms, and prove they are robust under any small perturbations of the input data matrix. This family generalizes several existing hyperspectral unmixing algorithms and hence provides for the first time …
