arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 1406.7800cond-mat.softcond-mat.mes-hallcond-mat.stat-mechphysics.bio-ph
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机械力作用下具有吸引相互作用的分子辫的坍缩与共存

Collapse and coexistence for a molecular braid with an attractive interaction component subject to mechanical forces

Dominic J. Lee

摘要:

双机械编织实验提供了一个有用的工具,与研究的性质的棒状分子,如肌动蛋白和DNA之间的相互作用。在接近分子凝聚的条件下,人们会期望两个分子之间的相互作用势出现局部最小值。我们调查这种情况下,引入一个有吸引力的组件的相互作用潜力,使用一个模型来描述这样的实验。我们考虑的吸引力,不依赖于分子结构,以及依赖于一个DNA样的螺旋结构。在编织实验中,一个吸引项可能会导致某些效应。局部最小值可能导致分子从松散的编织构型塌缩成紧密的构型,发生在围绕编织物的轴线施加的力矩的临界值处。对于固定数量的编织节距,这可能导致两种编织状态(紧密和松散)之间的共存。共存意味着一定比例的辫子处于每种状态,它们的相对大小取决于辫子节距的数量。这表现为数值计算的量作为编织节距数量的函数的线性依赖性。此外,在收缩状态下,编织物半径大致保持恒定。此外,如果吸引相互作用是螺旋相关的,左右手辫子对称性被打破。对于DNA一样的电荷分布,使用Kornyshev-Leikin相互作用模型,我们的研究结果表明,显着的辫子崩溃和共存只发生左手辫子。无论相互作用模型如何,这项研究都强调了编织物崩溃和共存的可能定性物理学;以及螺旋特定力可能发挥的作用(如果重要的话)。该模型可用于连接其他微观理论的相互作用与编织实验。

英文摘要:

Dual mechanical braiding experiments provide a useful tool with which investigate the nature of interactions between rod-like molecules, for instance actin and DNA. In conditions close to molecular condensation, one would expect an appearance of a local minimum in the interaction potential between the two molecules. We investigate this situation, introducing an attractive component into the interaction potential, using a model developed for describing such experiments. We consider attraction that does not depend on molecular structure, as well that which depends on a DNA-like helix structure. In braiding experiments, an attractive term may lead to certain effects. A local minimum may cause molecules to collapse from a loosely braided configuration into a tight one, occurring at a critical value of the moment applied about the axis of the braid. For a fixed number of braid pitches, this may lead to coexistence between the two braiding states, tight and loose. Coexistence implies certain proportions of the braid are in each state, their relative size depending on the number of braid pitches. This manifests itself as linear dependence in numerically calculated quantities as functions of the number of braid pitches. Also, in the collapsed state, the braid radius stays roughly constant. Furthermore, if the attractive interaction is helix dependent, the left-right handed braid symmetry is broken. For a DNA like charge distribution, using the Kornyshev-Leikin interaction model, our results suggest that significant braid collapse and coexistence only occurs for left handed braids. Regardless of the interaction model, the study highlights the possible qualitative physics of braid collapse and coexistence; and the role helix specific forces might play, if important. The model could be used to connect other microscopic theories of interaction with braiding experiments.

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