For most problems in science and engineering we can obtain data sets that describe the observed system from various perspectives and record the behavior of its individual components. Heterogeneous data sets can be collectively mined by data fusion. Fusion can focus on a specific target relation and exploit directly associated data together with contextual data and data about system's constraints. In the paper we describe a data fusion approach with penalized matrix tri-factorization (DFMF) that simultaneously factorizes data matrices to reveal hidden associations. The approach can directly consider any data that can be expressed in a matrix, including those from feature-based representations, ontologies, associations and networks. We demonstrate the utility of DFMF for gene function prediction task with eleven different data sources and for prediction of pharmacologic actions by fusing six data sources. Our data fusion algorithm compares favorably to alternative data integration approaches and achieves higher accuracy than can be obtained from any single data source alone.
NIMFA is an open-source Python library that provides a unified interface to nonnegative matrix factorization algorithms. It includes implementations of state-of-the-art factorization methods, initialization approaches, and quality scoring. It supports both dense and sparse matrix representation. NIMFA's component-based implementation and hierarchical design should help the users to employ already implemented techniques or design and code new strategies for matrix factorization tasks.
Matrix Factorization (MF) on large scale matrices is computationally as well as memory intensive task. Alternative convergence techniques are needed when the size of the input matrix is higher than the available memory on a Central Processing Unit (CPU) and Graphical Processing Unit (GPU). While alternating least squares (ALS) convergence on CPU could take forever, loading all the required matrices on to GPU memory may not be possible when the dimensions are significantly higher. Hence we introduce a novel technique that is based on considering the entire data into a block matrix and relies on…
Tensor factorization arises in many machine learning applications, such knowledge base modeling and parameter estimation in latent variable models. However, numerical methods for tensor factorization have not reached the level of maturity of matrix factorization methods. In this paper, we propose a new method for CP tensor factorization that uses random projections to reduce the problem to simultaneous matrix diagonalization. Our method is conceptually simple and also applies to non-orthogonal and asymmetric tensors of arbitrary order. We prove that a small number random projections essentiall…
School of Computer Science and Statistics, Trinity College（都柏林圣三一学院计算机科学与统计学院）
We propose a privacy-enhanced matrix factorization recommender that exploits the fact that users can often be grouped together by interest. This allows a form of "hiding in the crowd" privacy. We introduce a novel matrix factorization approach suited to making recommendations in a shared group (or nym) setting and the BLC algorithm for carrying out this matrix factorization in a privacy-enhanced manner. We demonstrate that the increased privacy does not come at the cost of reduced recommendation accuracy.
We study implicit regularization when optimizing an underdetermined quadratic objective over a matrix $X$ with gradient descent on a factorization of $X$. We conjecture and provide empirical and theoretical evidence that with small enough step sizes and initialization close enough to the origin, gradient descent on a full dimensional factorization converges to the minimum nuclear norm solution.
United States Census Bureau（美国人口普查局）；Colorado State University（科罗拉多州立大学）
The nonnegative matrix factorization is a widely used, flexible matrix decomposition, finding applications in biology, image and signal processing and information retrieval, among other areas. Here we present a related matrix factorization. A multi-objective optimization problem finds conical combinations of templates that approximate a given data matrix. The templates are chosen so that as far as possible only the initial data set can be represented this way. However, the templates are not required to be nonnegative nor convex combinations of the original data.
Motivated by an application in computational biology, we consider low-rank matrix factorization with $\{0,1\}$-constraints on one of the factors and optionally convex constraints on the second one. In addition to the non-convexity shared with other matrix factorization schemes, our problem is further complicated by a combinatorial constraint set of size $2^{m \cdot r}$, where $m$ is the dimension of the data points and $r$ the rank of the factorization. Despite apparent intractability, we provide - in the line of recent work on non-negative matrix factorization by Arora et al. (2012) - an algo…
Matrix factorization is one of the best approaches for collaborative filtering, because of its high accuracy in presenting users and items latent factors. The main disadvantages of matrix factorization are its complexity, and being very hard to be parallelized, specially with very large matrices. In this paper, we introduce a new method for collaborative filtering based on Matrix Factorization by combining simulated annealing with levy distribution. By using this method, good solutions are achieved in acceptable time with low computations, compared to other methods like stochastic gradient des…
University College London（伦敦大学学院）；University of Waterloo（滑铁卢大学）
Many businesses are using recommender systems for marketing outreach. Recommendation algorithms can be either based on content or driven by collaborative filtering. We study different ways to incorporate content information directly into the matrix factorization approach of collaborative filtering. These content-boosted matrix factorization algorithms not only improve recommendation accuracy, but also provide useful insights about the contents, as well as make recommendations more easily interpretable.
IRIT, Université de Toulouse, CNRS（图卢兹大学IRIT研究所、法国国家科学研究中心）
We present novel understandings of the Gamma-Poisson (GaP) model, a probabilistic matrix factorization model for count data. We show that GaP can be rewritten free of the score/activation matrix. This gives us new insights about the estimation of the topic/dictionary matrix by maximum marginal likelihood estimation. In particular, this explains the robustness of this estimator to over-specified values of the factorization rank, especially its ability to automatically prune irrelevant dictionary columns, as empirically observed in previous work. The marginalization of the activation matrix lead…
In this paper, we revisit implicit regularization from the ground up using notions from dynamical systems and invariant subspaces of Morse functions. The key contributions are a new criterion for implicit regularization---a leading contender to explain the generalization power of deep models such as neural networks---and a general blueprint to study it. We apply these techniques to settle a conjecture on implicit regularization in matrix factorization.
Probabilistic approach to Boolean matrix factorization can provide solutions robustagainst noise and missing values with linear computational complexity. However,the assumption about latent factors can be problematic in real world applications.This study proposed a new probabilistic algorithm free of assumptions of latentfactors, while retaining the advantages of previous algorithms. Real data experimentshowed that our algorithm was favourably compared with current state-of-the-artprobabilistic algorithms.
Tokyo Institute of Technology（东京工业大学）；Technicolor AI Lab（特艺集团人工智能实验室）
Several complex tasks that arise in organizations can be simplified by mapping them into a matrix completion problem. In this paper, we address a key challenge faced by our company: predicting the efficiency of artists in rendering visual effects (VFX) in film shots. We tackle this challenge by using a two-fold approach: first, we transform this task into a constrained matrix completion problem with entries bounded in the unit interval [0, 1]; second, we propose two novel matrix factorization models that leverage our knowledge of the VFX environment. Our first approach, expertise matrix factor…
University of Rochester（罗切斯特大学）；Rochester Institute of Technology（罗切斯特理工学院）
Nonnegative Matrix Factorization (NMF) is an unsupervised learning algorithm that produces a linear, parts-based approximation of a data matrix. NMF constructs a nonnegative low rank basis matrix and a nonnegative low rank matrix of weights which, when multiplied together, approximate the data matrix of interest using some cost function. The NMF algorithm can be modified to include auxiliary constraints which impose task-specific penalties or restrictions on the cost function of the matrix factorization. In this paper we propose a new NMF algorithm that makes use of non-data dependent auxiliar…
This paper presents a sequential randomized lowrank matrix factorization approach for incrementally predicting values of an unknown function at test points using the Gaussian Processes framework. It is well-known that in the Gaussian processes framework, the computational bottlenecks are the inversion of the (regularized) kernel matrix and the computation of the hyper-parameters defining the kernel. The main contributions of this paper are two-fold. First, we formalize an approach to compute the inverse of the kernel matrix using randomized matrix factorization algorithms in a streaming scenar…
Matrix Factorization is one of the most successful recommender system techniques over the past decade. However, the classic probabilistic theory framework for matrix factorization is modeled using normal distributions. To find better probabilistic models, algorithms such as RankMat, ZeroMat and DotMat have been invented in recent years. In this paper, we model the user rating behavior in recommender system as a Poisson process, and design an algorithm that relies on no input data to solve the recommendation problem and the cold start issue at the same time. We prove the superiority of our algo…
College of Computer Science and Technology, Chongqing University of Posts and Telecommunications（重庆邮电大学计算机科学与技术学院）；Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences（中国科学院重庆绿色智能技术研究院）；College of Computer and Information Science, Southwest University（西南大学计算机与信息科学学院）
Community is a fundamental and critical characteristic of an undirected social network, making community detection be a vital yet thorny issue in network representation learning. A symmetric and non-negative matrix factorization (SNMF) model is frequently adopted to address this issue owing to its great interpretability and scalability. However, it adopts a single latent factor matrix to represent an undirected network for precisely representing its symmetry, which leads to loss of representation learning ability due to the reduced latent space. Motivated by this discovery, this paper proposes…
IRIT, Université de Toulouse, CNRS（图卢兹大学 IRIT 研究所、法国国家科学研究中心）
We introduce negative binomial matrix factorization (NBMF), a matrix factorization technique specially designed for analyzing over-dispersed count data. It can be viewed as an extension of Poisson matrix factorization (PF) perturbed by a multiplicative term which models exposure. This term brings a degree of freedom for controlling the dispersion, making NBMF more robust to outliers. We show that NBMF allows to skip traditional pre-processing stages, such as binarization, which lead to loss of information. Two estimation approaches are presented: maximum likelihood and variational Bayes infere…
Global Convergence of Four-Layer Matrix Factorization under Random Initialization
Institute for Interdisciplinary Information Sciences（交叉信息研究院）；Tsinghua University（清华大学）；Paul G. Allen School of Computer Science and Engineering（保罗·G·艾伦计算机科学与工程学院）；University of Washington（华盛顿大学）；Electrical and Computer Engineering（电气与计算机工程）
Fox Chase Cancer Center, Temple University Health System（天普大学卫生系统福克斯·蔡斯癌症中心）
A theoretical framework for non-negative matrix factorization based on generalized dual Kullback-Leibler divergence, which includes members of the exponential family of models, is proposed. A family of algorithms is developed using this framework and its convergence proven using the Expectation-Maximization algorithm. The proposed approach generalizes some existing methods for different noise structures and contrasts with the recently proposed quasi-likelihood approach, thus providing a useful alternative for non-negative matrix factorizations. A measure to evaluate the goodness-of-fit of the …
Manifold regularization methods for matrix factorization rely on the cluster assumption, whereby the neighborhood structure of data in the input space is preserved in the factorization space. We argue that using the k-neighborhoods of all data points as regularization constraints can negatively affect the quality of the factorization, and propose an unsupervised and selective regularized matrix factorization algorithm to tackle this problem. Our approach jointly learns a sparse set of representatives and their neighbor affinities, and the data factorization. We further propose a fast approxima…
This paper aims at a better understanding of matrix factorization (MF), factorization machines (FM), and their combination with deep algorithms' application in recommendation systems. Specifically, this paper will focus on Singular Value Decomposition (SVD) and its derivations, e.g Funk-SVD, SVD++, etc. Step-by-step formula calculation and explainable pictures are displayed. What's more, we explain the DeepFM model in which FM is assisted by deep learning. Through numerical examples, we attempt to tie the theory to real-world problems.
Multiresolution Matrix Factorization (MMF) is unusual amongst fast matrix factorization algorithms in that it does not make a low rank assumption. This makes MMF especially well suited to modeling certain types of graphs with complex multiscale or hierarchical strucutre. While MMF promises to yields a useful wavelet basis, finding the factorization itself is hard, and existing greedy methods tend to be brittle. In this paper we propose a learnable version of MMF that carfully optimizes the factorization with a combination of reinforcement learning and Stiefel manifold optimization through back…
Language Technologies Institute（语言技术研究所）；Carnegie Mellon University（卡内基梅隆大学）
In this paper, we propose the use of in-training matrix factorization to reduce the model size for neural machine translation. Using in-training matrix factorization, parameter matrices may be decomposed into the products of smaller matrices, which can compress large machine translation architectures by vastly reducing the number of learnable parameters. We apply in-training matrix factorization to different layers of standard neural architectures and show that in-training factorization is capable of reducing nearly 50% of learnable parameters without any associated loss in BLEU score. Further…
We study the non-convex matrix factorization approach to matrix completion via Riemannian geometry. Based on an optimization formulation over a Grassmannian manifold, we characterize the landscape based on the notion of principal angles between subspaces. For the fully observed case, our results show that there is a region in which the cost is geodesically convex, and outside of which all critical points are strictly saddle. We empirically study the partially observed case based on our findings.
We derive analytical expression of matrix factorization/completion solution by variational Bayes method, under the assumption that observed matrix is originally the product of low-rank dense and sparse matrices with additive noise. We assume the prior of sparse matrix is Laplace distribution by taking matrix sparsity into consideration. Then we use several approximations for derivation of matrix factorization/completion solution. By our solution, we also numerically evaluate the performance of sparse matrix reconstruction in matrix factorization, and completion of missing matrix element in mat…
We present a general-purpose data compression algorithm, Regularized L21 Semi-NonNegative Matrix Factorization (L21 SNF). L21 SNF provides robust, parts-based compression applicable to mixed-sign data for which high fidelity, individualdata point reconstruction is paramount. We derive a rigorous proof of convergenceof our algorithm. Through experiments, we show the use-case advantages presentedby L21 SNF, including application to the compression of highly overdeterminedsystems encountered broadly across many general machine learning processes.
Matrix factorization is a popular approach for large-scale matrix completion. The optimization formulation based on matrix factorization can be solved very efficiently by standard algorithms in practice. However, due to the non-convexity caused by the factorization model, there is a limited theoretical understanding of this formulation. In this paper, we establish a theoretical guarantee for the factorization formulation to correctly recover the underlying low-rank matrix. In particular, we show that under similar conditions to those in previous works, many standard optimization algorithms con…
We present a novel game-theoretic formulation of Non-Negative Matrix Factorization (NNMF), a popular data-analysis method with many scientific and engineering applications. The game-theoretic formulation is shown to have favorable scaling and parallelization properties, while retaining reconstruction and convergence performance comparable to the traditional Multiplicative Updates algorithm.
Online nonnegative matrix factorization (ONMF) is a matrix factorization technique in the online setting where data are acquired in a streaming fashion and the matrix factors are updated each time. This enables factor analysis to be performed concurrently with the arrival of new data samples. In this article, we demonstrate how one can use online nonnegative matrix factorization algorithms to learn joint dictionary atoms from an ensemble of correlated data sets. We propose a temporal dictionary learning scheme for time-series data sets, based on ONMF algorithms. We demonstrate our dictionary l…
Nonnegative Matrix Factorization (NMF) is a widely used technique for data representation. Inspired by the expressive power of deep learning, several NMF variants equipped with deep architectures have been proposed. However, these methods mostly use the only nonnegativity while ignoring task-specific features of data. In this paper, we propose a novel deep approximately orthogonal nonnegative matrix factorization method where both nonnegativity and orthogonality are imposed with the aim to perform a hierarchical clustering by using different level of abstractions of data. Experiment on two fac…
The Boolean matrix factorization problem consists in approximating a matrix by the Boolean product of two smaller Boolean matrices. To obtain optimal solutions when the matrices to be factorized are small, we propose SAT and MaxSAT encoding; however, when the matrices to be factorized are large, we propose a heuristic based on the search for maximal biclique edge cover. We experimentally demonstrate that our approaches allow a better factorization than existing approaches while keeping reasonable computation times. Our methods also allow the handling of incomplete matrices with missing entries…
National University of Singapore（新加坡国立大学）；IRIT, Université de Toulouse, CNRS（图卢兹大学IRIT实验室、法国国家科学研究中心）
We consider an adversarially-trained version of the nonnegative matrix factorization, a popular latent dimensionality reduction technique. In our formulation, an attacker adds an arbitrary matrix of bounded norm to the given data matrix. We design efficient algorithms inspired by adversarial training to optimize for dictionary and coefficient matrices with enhanced generalization abilities. Extensive simulations on synthetic and benchmark datasets demonstrate the superior predictive performance on matrix completion tasks of our proposed method compared to state-of-the-art competitors, includin…
The University of Texas Rio Grande Valley（德克萨斯大学里奥格兰德谷分校）；University of California Los Angeles（加州大学洛杉矶分校）
Nonnegative matrix factorization can be used to automatically detect topics within a corpus in an unsupervised fashion. The technique amounts to an approximation of a nonnegative matrix as the product of two nonnegative matrices of lower rank. In this paper, we show this factorization can be combined with regression on a continuous response variable. In practice, the method performs better than regression done after topics are identified and retrains interpretability.
Non-Negative Matrix Factorization (NMF) is a valuable matrix factorization technique which produces a "parts-based" decomposition of data sets. Wi-Fi user counts are a privacy-preserving indicator of population movements in smart and connected urban environments. In this paper, we apply NMF with a novel matrix embedding to Wi-Fi user count data from the University of Colorado at Boulder Campus for the purpose of automatically identifying patterns of human movement in a Smart and Connected infrastructure environment.
We propose a method for computing binary orthogonal non-negative matrix factorization (BONMF) for clustering and classification. The method is tested on several representative real-world data sets. The numerical results confirm that the method has improved accuracy compared to the related techniques. The proposed method is fast for training and classification and space efficient.
Supervised Deep Multimodal Matrix Factorization for Interpretable Brain Network Analysis
Dept. of Mathematics & Operational Research University of Mons（数学与运筹学系蒙斯大学）；Dept. of Computer Science & Engineering Lehigh University（计算机科学与工程系莱斯大学）；Dept. of Industrial & Systems Engineering Lehigh University（工业与系统工程系莱斯大学）
Univ. de Lyon（里昂大学）；ENS de Lyon（里昂高等师范学院）；UCBL（里昂第一大学）；CNRS（法国国家科学研究中心）；Inria（法国国家信息与自动化研究所）
Fast transforms correspond to factorizations of the form $\mathbf{Z} = \mathbf{X}^{(1)} \ldots \mathbf{X}^{(J)}$, where each factor $ \mathbf{X}^{(\ell)}$ is sparse and possibly structured. This paper investigates essential uniqueness of such factorizations, i.e., uniqueness up to unavoidable scaling ambiguities. Our main contribution is to prove that any $N \times N$ matrix having the so-called butterfly structure admits an essentially unique factorization into $J$ butterfly factors (where $N = 2^{J}$), and that the factors can be recovered by a hierarchical factorization method, which consis…
Toronto Metropolitan University（多伦多都会大学）；University of Toronto（多伦多大学）
The selection of most informative and discriminative features from high-dimensional data has been noticed as an important topic in machine learning and data engineering. Using matrix factorization-based techniques such as nonnegative matrix factorization for feature selection has emerged as a hot topic in feature selection. The main goal of feature selection using matrix factorization is to extract a subspace which approximates the original space but in a lower dimension. In this study, rank revealing QR (RRQR) factorization, which is computationally cheaper than singular value decomposition (…
Columbia University（哥伦比亚大学）；Colorado State University（科罗拉多州立大学）；Stony Brook University（石溪大学）；Brookhaven National Laboratory（布鲁克海文国家实验室）
We validate the use of matrix factorization for the automatic identification of relevant components from atomic pair distribution function (PDF) data. We also present a newly developed software infrastructure for analyzing the PDF data arriving in streaming manner. We then apply two matrix factorization techniques, Principal Component Analysis (PCA) and Non-negative Matrix Factorization (NMF), to study simulated and experiment datasets in the context of in situ experiment.
Grad. School of Information Science and Technology, Hokkaido University（北海道大学信息科学与技术研究生院）
This paper provides a theoretical explanation on the clustering aspect of nonnegative matrix factorization (NMF). We prove that even without imposing orthogonality nor sparsity constraint on the basis and/or coefficient matrix, NMF still can give clustering results, thus providing a theoretical support for many works, e.g., Xu et al. [1] and Kim et al. [2], that show the superiority of the standard NMF as a clustering method.
Despite the outstanding performance of deep neural networks in different applications, they are still computationally extensive and require a great number of memories. This motivates more research on reducing the resources required for implementing such networks. An efficient approach addressed for this purpose is matrix factorization, which has been shown to be effective on different networks. In this paper, we utilize binary matrix factorization and show its great efficiency in reducing the required number of resources in deep neural networks. In effect, this technique can lead to the practi…
Artificial Intelligence Technology Engineering Research Center, Open University of Henan（河南开放大学人工智能技术工程研究中心）；University of Wollongong（伍伦贡大学）；Weizmann Institute of Science（魏茨曼科学研究所）；University of Sydney（悉尼大学）
We consider matrix factorization (MF) with certain constraints, which finds wide applications in various areas. Leveraging variational inference (VI) and unitary approximate message passing (UAMP), we develop a Bayesian approach to MF with an efficient message passing implementation, called UAMPMF. With proper priors imposed on the factor matrices, UAMPMF can be used to solve many problems that can be formulated as MF, such as non negative matrix factorization, dictionary learning, compressive sensing with matrix uncertainty, robust principal component analysis, and sparse matrix factorization…
We present ALX, an open-source library for distributed matrix factorization using Alternating Least Squares, written in JAX. Our design allows for efficient use of the TPU architecture and scales well to matrix factorization problems of O(B) rows/columns by scaling the number of available TPU cores. In order to spur future research on large scale matrix factorization methods and to illustrate the scalability properties of our own implementation, we also built a real world web link prediction dataset called WebGraph. This dataset can be easily modeled as a matrix factorization problem. We creat…
Matrix factorization techniques compute low-rank product approximations of high dimensional data matrices and as a result, are often employed in recommender systems and collaborative filtering applications. However, many algorithms for this task utilize an exact least-squares solver whose computation is time consuming and memory-expensive. In this paper we discuss and test a block Kaczmarz solver that replaces the least-squares subroutine in the common alternating scheme for matrix factorization. This variant trades a small increase in factorization error for significantly faster algorithmic p…
