Previous studies of the 2.2 < z< 2.7 HeII Lyman-alpha forest measured much larger ionizing background fluctuations than are anticipated theoretically. We re-analyze recent Hubble Space Telescope data from the two HeII sightlines that have been used to make these measurements, HE2347-4342 and HS1700+6416, and find that the vast majority of the absorption is actually consistent with a single HeII photoionization rate. We show that the data constrains the RMS fractional fluctuation level smoothed at 1 Mpc to be < 2 and discuss why other studies had found larger fluctuations. Our measurement is consistent with models in which quasars dominate the z=2.5 metagalactic HeII-ionizing background (but it can accommodate less compelling models), and it suggests that quasars (rather than stars) are the dominant contributor to the HI-ionizing background. We detect a HeII transverse proximity effect that is slightly offset in redshift from a known quasar. Its profile and offset may indicate that the quasar turned on 10 Myr ago.
We examine large-scale fluctuations in the HeII Lyman-alpha forest transmission during and after HeII reionization. We use a simple Monte Carlo model to distribute quasars throughout a large volume and compute the resulting radiation field along one-dimensional skewers. In agreement with previous studies, we find that the rarity of these sources induces order unity fluctuations in the mean optical depth after reionization, even when averaged over large segments (~10-100 Mpc across). We compare our models to existing data along five HeII Lyman-alpha forest lines of sight spanning z~2-3.2. The l…
Many experts believe that the z ~ 3 HeII Ly-alpha forest will suffer from the same saturation issues as the z ~ 6 HI Ly-alpha forest and, therefore, will not be a sensitive probe of HeII reionization. However, there are several factors that make HeII Ly-alpha absorption more sensitive than HI Ly-alpha. We show that observations of HeII Ly-alpha and Ly-beta Gunn-Peterson troughs can provide a relatively model-independent constraint on the volume-averaged HeII fraction of x_HeII >~ 0.1. This bound derives from first using the most underdense regions in the HeII forest to constrain the local HeII…
We show that comparisons of HeII Lyman-alpha forest lines of sight to nearby quasar populations can strongly constrain the lifetimes and emission geometry of quasars. By comparing the HeII and HI Lyman-alpha forests along a particular line of sight, one can trace fluctuations in the hardness of the radiation field (which are driven by fluctuations in the HeII ionization rate). Because this high-energy background is highly variable - thanks to the rarity of the bright quasars that dominate it and the relatively short attenuation lengths of these photons - it is straightforward to associate feat…
We present new high-resolution (R~14,000) spectra of the two brightest HeII-transparent quasars in the far-UV (FUV) at z>3.5, HE2QSJ2311-1417 (z=3.70) and HE2QSJ1630+0435 (z=3.81), obtained with the Cosmic Origins Spectrograph (COS) on the Hubble Space Telescope (HST). In the predominantly saturated HeII absorption spectra, both sightlines show several isolated resolved (full width at half maximum FWHM>50 km/s) transmission spikes in HeII Ly$α$ and HeII Ly$β$. The incidence of such spikes decreases with increasing redshift, but both sightlines show significant spikes at z>3.5, signaling the pr…
We report on the detection of strongly varying intergalactic HeII absorption in HST/COS spectra of two z~3 quasars. From our homogeneous analysis of the HeII absorption in these and three archival sightlines, we find a marked increase in the mean HeII effective optical depth from tau~1 at z~2.3 to tau>5 at z~3.2, but with a large scatter of 2< tau <5 at 2.7< z <3 on scales of ~10 proper Mpc. This scatter is primarily due to fluctuations in the HeII fraction and the HeII-ionizing background, rather than density variations that are probed by the co-eval HI forest. Semianalytic models of HeII abs…
Three independent observational studies have now detected a narrow (Δz ~ 0.5) dip centred at z=3.2 in the otherwise smooth redshift evolution of the Lya forest effective optical depth. This feature has previously been interpreted as an indirect signature of rapid photo-heating in the IGM during the epoch of HeII reionisation. We examine this interpretation using a semi-analytic model of inhomogeneous HeII reionisation and high resolution hydrodynamical simulations of the Lya forest. We instead find that a rapid (Δz ~ 0.2) boost to the IGM temperature (ΔT ~ 10^4 K) beginning at z=3.4 produces a…
We present a study of an extended Lyman-alpha (Lya) nebula located in a known overdensity at z~2.38. The data include multiwavelength photometry covering the rest-frame spectral range from 0.1 to 250um, and deep optical spectra of the sources associated with the extended emission. Two galaxies are associated with the Lya nebula. One of them is a dust enshrouded AGN, while the other is a powerful starburst, forming stars at >~600 Msol/yr. We detect the HeII emission line at 1640A in the spectrum of the obscured AGN, but detect no emission from other highly ionized metals (CIV or NV) as is expec…
The reionization of the second electron of helium shapes the physical state of intergalactic gas at redshifts between 2 < z < 5. Because performing full in situ radiative transfer in hydrodynamic simulations is computationally expensive for large volumes, the physics of HeII reionization is often approximated by a uniform UV background model that does not capture the patchiness of reionization. We have devised a model that implements the effects of HeII reionization using semi-analytic calculations of the thermal state of intergalactic gas-- a way to bypass a full radiative transfer simulation…
We use a set of AMR hydrodynamic simulations post-processed with the radiative-transfer code RADAMESH to study how inhomogeneous HeII reionization affects the intergalactic medium (IGM). We propagate radiation from active galactic nuclei (AGNs) considering two scenarios for the time evolution of the ionizing sources. We find that HeII reionization takes place in a very inhomogeneous fashion, through the production of well separated bubbles of the ionized phase that subsequently percolate. Overall, the reionization process is extended in time and lasts for a redshift interval Delta z>1. At fixe…
We have discovered a ~45 kpc Lya nebula (or Lya ``blob'') at z~1.67 which exhibits strong, spatially-extended HeII emission and very weak CIV and CIII] emission. This is the first spatially-extended Lya+HeII emitter observed and the lowest redshift Lya blob yet found. Strong Lya and HeII-1640 emission in the absence of metal lines has been proposed as a unique observational signature of primordial galaxy formation (e.g., from gravitational cooling radiation or Population III star formation), but no convincing examples of spatially-extended Lya+HeII emitters have surfaced either in Lya-emitting…
We discuss the potential of using the HeI 584 A forest to detect and study HeII reionization. Significant 584 A absorption is expected from intergalactic HeII regions, whereas there should be no detectable absorption from low density gas in HeIII regions. Unlike HeII Ly-alpha absorption (the subject of much recent study), the difficulty with using this transition to study HeII reionization is not saturation but rather that the absorption is weak. The Gunn-Peterson optical depth for this transition is tau ~ 0.1 x_{HeII} Delta^2 [(1+z)/5]^{9/2}, where x_{HeII} is the fraction of helium in HeII a…
Young, massive stars dominate the rest-frame ultraviolet spectra of star-forming galaxies. At high redshifts (z>2), these rest-UV features are shifted into the observed-frame optical and a combination of gravitational lensing, deep spectroscopy and spectral stacking analysis allows the stellar population characteristics of these sources to be investigated. We use our stellar population synthesis code BPASS to fit two strong rest-UV spectral features in published Lyman-break galaxy spectra, taking into account the effects of binary evolution on the stellar spectrum. In particular, we consider t…
The Lyman-alpha forest is the large-scale structure probe for which we appear to have modeling control to the highest wavenumbers. This makes the Lyman-alpha forest of great interest for constraining the warmness/fuzziness of dark matter and the timing of reionization processes. However, the standard statistic, the Lyman-alpha forest power spectrum, is unable to strongly constrain the IGM temperature-density relation, and this inability further limits how well other high wavenumber-sensitive parameters can be constrained. With the aim of breaking these degeneracies, we measure the power spectr…
We present the first detection of a correlation between the Lyman-$α$ forest and cosmic microwave background (CMB) lensing. For each Lyman-$α$ forest in SDSS-III/BOSS DR12, we correlate the one-dimensional power spectrum with the CMB lensing convergence on the same line of sight from Planck. This measurement constitutes a position-dependent power spectrum, or a squeezed bispectrum, and quantifies the non-linear response of the Lyman-$α$ forest power spectrum to a large-scale overdensity. The signal is measured at 5~$σ$ and is consistent with the $Λ$CDM expectation. We measure the linear bias o…
The Lyman-alpha forest is a unique probe of large-scale matter density fluctuations at high redshift (z > 2). It is possible to obtain 3D maps of the matter distribution from Lyman-alpha data, using tomographic reconstruction methods. Here, we present the largest tomographic map of matter fluctuations at z > 2, over the Gpc^3 volume covered by Lyman-alpha forest from SDSS-IV quasar spectra in the Stripe 82 field. We present a catalog of high-redshift voids constructed from this map. The measurement of the cross-correlation between these voids and the Lyman-alpha forest provides the first obser…
We quantify the impact of massive neutrinos on the statistics of low density regions in the intergalactic medium (IGM) as probed by the Lyman-alpha forest at redshifts z=2.2--4. Based on mock but realistic quasar (QSO) spectra extracted from hydrodynamic simulations with cold dark matter, baryons and neutrinos, we find that the probability distribution of weak Lyman-alpha absorption features, as sampled by Lyman-alpha flux regions at high transmissivity, is strongly affected by the presence of massive neutrinos. We show that systematic errors affecting the Lyman-alpha forest reduce but do not …
Continuum fitting is an important aspect of Lyman-alpha forest science, since errors in the estimated optical depths scale with the fractional continuum error. However, traditional methods of estimating continua in noisy and moderate-resolution spectra (S/N < 10 pixel^-1 and R ~ 2000, respectively, such as SDSS) using power-law extrapolation or the mean spectrum, achieve no better than ~ 10-15% RMS accuracy. To improve on this, we introduce mean-flux regulated/principal component analysis (MF-PCA) continuum fitting. In this technique, PCA fitting is carried out redwards of the quasar Lyman-alp…
In this work we extend our recently developed multi-fidelity emulation technique to the simulated Lyman-$α$ forest flux power spectrum. Multi-fidelity emulation allows interpolation of simulation outputs between cosmological parameters using many cheap low-fidelity simulations and a few expensive high-fidelity simulations. Using a test suite of small box (30 Mpc/h) simulations, we show that multi-fidelity emulation is able to reproduce the Lyman-$α$ forest flux power spectrum well, achieving an average accuracy when compared to a test suite of $0.8\%$. We further show that it has a substantial…
The post-reionization thermal state of the intergalactic medium is characterized by a power-law relationship between temperature and density, with a slope determined by the parameter $γ$. We describe a new method to measure $γ$ using the ratio of flux curvature in the Lyman-$α$ and $β$ forests. At a given redshift, this curvature ratio incorporates information from the different gas densities traced by Lyman-$α$ and $β$ absorption. It is relatively simple and fast to compute and appears robust against several observational uncertainties. We apply this technique to a sample of 27 high-resolutio…
After quasars ionize intergalactic HeII at z~3, a large radiation field builds up above the HeII ionization edge. Unlike the background responsible for HI ionizations, this field should be highly variable, thanks to the scarcity of bright quasars and the relatively short attenuation lengths (~50 Mpc) of these high-energy photons. Recent observations of the HeII and HI Lyman-alpha forests show that this background does indeed vary strongly, with substantial fluctuations on scales as small as ~2 Mpc. Here we show that such spatial fluctuation scales are naturally expected in any model in which t…
The angular positions of quasars are deflected by the gravitational lensing effect of foreground matter. The Lyman-alpha forest seen in the spectra of these quasars is therefore also lensed. We propose that the signature of weak gravitational lensing of the forest could be measured using similar techniques that have been applied to the lensed Cosmic Microwave Background, and which have also been proposed for application to spectral data from 21cm radio telescopes. As with 21cm data, the forest has the advantage of spectral information, potentially yielding many lensed "slices" at different red…
We provide an analytical description of the line broadening of HI absorbers in the Lyman-alpha forest resulting from Doppler broadening and Jeans smoothing. We demonstrate that our relation captures the dependence of the line-width on column density for narrow lines in z~3 mock spectra remarkably well. Broad lines at a given column density arise when the underlying density structure is more complex, and such clustering is not captured by our model. Our understanding of the line broadening opens the way to a new method to characterise the thermal state of the intergalactic medium and to determi…
We present the first measurement of the large-scale cross-correlation of Lyman alpha forest absorption and Damped Lyman alpha systems (DLA), using the 9th Data Release of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is clearly detected on scales up to 40 Mpc/h and is well fitted by the linear theory prediction of the standard Cold Dark Matter model of structure formation with the expected redshift distortions, confirming its origin in the gravitational evolution of structure. The amplitude of the DLA-Lyman alpha cross-correlation depends on only one free parameter,…
We present new simulations of the flux power spectrum of the Lyman $α$ forest as a means to investigate the effects of time-dependent dark energy on structure formation. We use a linearized parameterization of the time-dependence of the dark energy equation of state and sample the parameters ($w_0,w_a$) from the the extrema of the allowed observational values as determined by the Planck results. Each chosen ($w_0,w_a$) pair is then used in a high-resolution, large-scale cosmological simulation run with a modified version of the publicly available SPH code {\tt GADGET-2}. From each of these sim…
Detection of primordial non-Gaussianity will give us an unprecedented detail of the physics of inflation. As observational probes are now exploring new expanses of the inflationary landscape, it is crucial to distinguish and disentangle effects of various non-Gaussianities beyond f_NL. In this work, we calculate the effects of non-Gaussianities parametrized by f_NL and the cubic-order g_NL, on the Lyman-alpha-forest flux measurements. We give the expressions of the bias due to f_NL and g_NL, which can be deduced from accurate measurements of the transmitted flux. We show how these two effects …
The squeezed-limit bispectrum, which is generated by nonlinear gravitational evolution as well as inflationary physics, measures the correlation of three wavenumbers, in the configuration where one wavenumber is much smaller than the other two. Since the squeezed-limit bispectrum encodes the impact of a large-scale fluctuation on the small-scale power spectrum, it can be understood as how the small-scale power spectrum "responds" to the large-scale fluctuation. Viewed in this way, the squeezed-limit bispectrum can be calculated using the response approach even in the cases which do not submit …
The amplitude of the metagalactic ultraviolet background (UVB) at large-scales is impacted by two factors. First, it naturally attenuates at scales larger than mean-free-path of UVB photons due to the absorption by neutral intergalactic medium. Second, there are discrete and rare ionizing sources distributing in the Universe, emitting the UVB photons, and thus enhancing the local UVB amplitude. Therefore, for cosmological probe that is sensitive to the UVB amplitude and capable of detecting the large scale like Lyman-$α$ forest spectrum, the fluctuation due to the clustering of ionizing source…
The baryon-acoustic oscillation (BAO) feature in the Lyman-$α$ forest is one of the key probes of the cosmic expansion rate at redshifts z~2.5, well before dark energy is believed to have become dynamically significant. A key advantage of the BAO as a standard ruler is that it is a sharp feature and hence is more robust against broadband systematic effects than other cosmological probes. However, if the Lyman-$α$ forest transmission is sensitive to the initial streaming velocity of the baryons relative to the dark matter, then the BAO peak position can be shifted. Here we investigate this sens…
We measure the large-scale cross-correlation of quasars with the Lyman α forest absorption in redshift space, using ~ 60000 quasar spectra from Data Release 9 (DR9) of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is detected over a wide range of scales, up to comoving separations r of 80 Mpc/h. For r > 15 Mpc/h, we show that the cross-correlation is well fitted by the linear theory prediction for the mean overdensity around a quasar host halo in the standard ΛCDM model, with the redshift distortions indicative of gravitational evolution detected at high confidence.…
We study and compare fitting methods for the Lyman-$α$ (Ly$α$) forest 3D correlation function. We use the nested sampler PolyChord and the community code picca to perform a Bayesian analysis which we compare with previous frequentist analyses. By studying synthetic correlation functions, we find that the frequentist profile likelihood produces results in good agreement with a full Bayesian analysis. On the other hand, Maximum Likelihood Estimation with the Gaussian approximation for the uncertainties is inadequate for current data sets. We compute for the first time the full posterior distribu…
We have proposed a method for measuring weak lensing using the Lyman-alpha forest. Here we estimate the noise expected in weak lensing maps and power spectra for different sets of observational parameters. We find that surveys of the size and quality of the ones being done today and ones planned for the future will be able to measure the lensing power spectrum at a source redshift of z~2.5 with high precision and even be able to image the distribution of foreground matter with high fidelity on degree scales. For example, we predict that Lyman-alpha forest lensing measurement from the Dark Ener…
The spectrum of cosmic ultraviolet background radiation at He II ionizing energies (E > 4 Ryd) is important to study the He II reionization, thermal history of the intergalactic medium (IGM) and metal lines observed in QSO absorption spectra. It is determined by the emissivity of QSOs at E > 4 Ryd obtained from their observed luminosity functions and the mean spectral energy distribution (SED). The SED is approximated as a power-law at energies E > 1 Ryd, $f_E \propto E^α$, where the existing observations constrain the power-law index $α$ only up to ~2.3 Ryd. Here, we constrain $α$ for E > 4 R…
We use hydrodynamic cosmological simulations in a (600 Mpc)^3 volume to study the observability of baryon acoustic oscillations (BAO) in the intergalactic medium as probed by Lyman alpha forest (LAF) absorption. The large scale separation between the wavelength of the BAO mode (~150 Mpc) and the size of LAF absorbers (~100 kpc) makes this a numerically challenging problem. We report on several 2048^3 simulations of the LAF using the ENZO code. We adopt WMAP5 concordance cosmological parameters and power spectrum including BAO perturbations. 5000 synthetic HI absorption line spectra are generat…
In this work, we analyze the Lyman-$α$ forest in cosmological hydrodynamical simulations of chameleon-type f(R) gravity with the goal to assess whether the impact of such models is detectable in absorption line statistics. We carry out a set of hydrodynamical simulations with the cosmological simulation code MG-GADGET, including star formation and cooling effects, and create synthetic Lyman-$α$ absorption spectra from the simulation outputs. We statistically compare simulations with f(R) and ordinary general relativity, focusing on flux probability distribution functions (PDFs) and flux power-…
We measure the effect of high column density absorbing systems of neutral hydrogen (HI) on the one-dimensional (1D) Lyman-alpha forest flux power spectrum using cosmological hydrodynamical simulations from the Illustris project. High column density absorbers (which we define to be those with HI column densities $N(\mathrm{HI}) > 1.6 \times 10^{17}\,\mathrm{atoms}\,\mathrm{cm}^{-2}$) cause broadened absorption lines with characteristic damping wings. These damping wings bias the 1D Lyman-alpha forest flux power spectrum by causing absorption in quasar spectra away from the location of the absor…
In Lyman-alpha forest measurements it is generally assumed that quasars are mere background light sources which are uncorrelated with the forest. Gravitational lensing of the quasars violates this assumption. This effect leads to a measurement bias, but more interestingly it provides a valuable signal. The lensing signal can be extracted by correlating quasar magnitudes with the flux power spectrum and with the flux decrement. These correlations will be challenging to measure but their detection provides a direct measure of how features in the Lyman-alpha forest trace the underlying mass densi…
We compare the observed probability distribution function of the transmission in the \HI\ Lyman-alpha forest, measured from the UVES 'Large Programme' sample at redshifts z=[2,2.5,3], to results from the GIMIC cosmological simulations. Our measured values for the mean transmission and its PDF are in good agreement with published results. Errors on statistics measured from high-resolution data are typically estimated using bootstrap or jack-knife resampling techniques after splitting the spectra into chunks. We demonstrate that these methods tend to underestimate the sample variance unless the …
The hydrogen Ly$α$ forest is an important probe of the $z>2$ Universe that is otherwise challenging to observe with galaxy redshift surveys, but this technique has traditionally been limited to 1D studies in front of bright quasars. However, by pushing to faint magnitudes ($g>23$) with 8-10m large telescopes it becomes possible to exploit the high area density of high-redshift star-forming galaxies to create 3D tomographic maps of large-scale structure in the foreground. I describe the first pilot observations using this technique, as well discuss future surveys and the resulting science possi…
We investigate the possibility of using the cross-correlation of the Lyman-alpha forest and redshifted 21-cm emission to detect the baryon acoustic oscillation (BAO). The standard Fisher matrix formalism is used to determine the accuracy with which it will be possible to measure cosmological distances using this signal. Earlier predictions indicate that it will be possible to measure the dilation factor D_V with 1.9 % accuracy at z=2.5 from the BOSS Lyman-alpha forest auto-correlation. In this paper we investigate if it is possible to improve the accuracy using the cross-correlation. We use a …
Cosmological hydrodynamic simulations can accurately predict the properties of the intergalactic medium (IGM), but only under the condition of retaining high spatial resolution necessary to resolve density fluctuations in the IGM. This resolution constraint prohibits simulating large volumes, such as those probed by BOSS and future surveys, like DESI and 4MOST. To overcome this limitation, we present Iteratively Matched Statistics (IMS), a novel method to accurately model the Lyman-alpha forest with collisionless N-body simulations, where the relevant density fluctuations are unresolved. We us…
Massive spectroscopic surveys of high-redshift quasars yield large numbers of correlated Lyman α absorption spectra that can be used to measure large-scale structure. Simulations of these surveys are required to accurately interpret the measurements of correlations and correct for systematic errors. An efficient method to generate mock realizations of Lyman α forest surveys is presented which generates a field over the lines of sight to the survey sources only, instead of having to generate it over the entire three-dimensional volume of the survey. The method can be calibrated to reproduce the…
Maps of the large-scale structure of the Universe at redshifts 2-4 can be made with the Lyman-alpha forest which are complementary to low redshift galaxy surveys. We apply the Wiener interpolation method of Caucci et al. to construct three-dimensional maps from sets of Lyman-alpha forest spectra taken from cosmological hydrodynamic simulations. We mimic some current and future quasar redshift surveys (BOSS, eBOSS and MS-DESI) by choosing similar sightline densities. We use these appropriate subsets of the Lyman-alpha absorption sightlines to reconstruct the full three dimensional Lyman-alpha f…
In recent years, the autocorrelation of the hydrogen Lyman-α forest has been used to observe the baryon acoustic peak at redshift 2 < z < 3.5 using tens of thousands of QSO spectra from the BOSS survey. However, the interstellar medium of the Milky-Way introduces absorption lines into the spectrum of any extragalactic source. These lines, while weak and undetectable in a single BOSS spectrum, could potentially bias the cosmological signal. In order to examine this, we generate absorption line maps by stacking over a million spectra of galaxies and QSOs. We find that the systematics introduced …
We present a theoretical estimate for a new observable: the cross-correlation between the Lyman-alpha flux fluctuations in quasar (QSO) spectra and the convergence of the cosmic microwave background (CMB) as measured along the same line-of-sight. As a first step toward the assessment of its detectability, we estimate the signal-to-noise ratio using linear theory. Although the signal-to-noise is small for a single line-of-sight and peaks at somewhat smaller redshifts than those probed by the Lyman-alpha forest, we estimate a total signal-to-noise of 9 for cross-correlating QSO spectra of SDSS-I…
We present the first simulation of the signature of baryonic acoustic oscillations (BAO) in Lyman alpha forest data containing 180,000 mock quasar sight-lines. We use eight large dark-matter only simulations onto which we paint the Lyman alpha field using the fluctuating Gunn-Peterson approximation. We argue that this approach should be sufficient for the mean signature on the scales of interest. Our results indicate that Lyman alpha flux provides a good tracer of the underlying dark matter field on large scales and that redshift space distortions are well described by a simple linear theory p…
Current results from the Lyman alpha forest assume that the primordial power spectrum of density perturbations follows a simple power law form, with running. We present the first analysis of Lyman alpha data to study the effect of relaxing this strong assumption on primordial and astrophysical constraints. We perform a large suite of numerical simulations, using them to calibrate a minimally parametric framework for describing the power spectrum. Combined with cross-validation, a statistical technique which prevents over-fitting of the data, this framework allows us to reconstruct the power sp…
The sources which reionized the Intergalactic Medium by redshift ~6 are still unknown. A severe constraint on the ionization process is the low emissivity required to maintain the ionization in the Lyman-α forest. Simulation-calibrated observations suggest a production rate of at most only a few photons per baryon. In this work, we present a new solution to this "photon-starvation" problem using a weak background of cosmic magnetic fields, which may be present as a consequence of early-Universe physics and subsequent magneto-hydrodynamical amplification. If present, such magnetic fields can in…
We present methods for interpolating between the 1-D flux power spectrum of the Lyman-$α$ forest, as output by cosmological hydrodynamic simulations. Interpolation is necessary for cosmological parameter estimation due to the limited number of simulations possible. We construct an emulator for the Lyman-$α$ forest flux power spectrum from $21$ small simulations using Latin hypercube sampling and Gaussian process interpolation. We show that this emulator has a typical accuracy of 1.5% and a worst-case accuracy of 4%, which compares well to the current statistical error of 3 - 5% at $z < 3$ from…
The recent discovery by Cantalupo et al. (2014) of the largest (~500 kpc) and luminous Ly-alpha nebula associated with the quasar UM287 (z=2.279) poses a great challenge to our current understanding of the astrophysics of the halos hosting massive z~2 galaxies. Either an enormous reservoir of cool gas is required $M\simeq10^{12}$ $M_{\odot}$, exceeding the expected baryonic mass available, or one must invoke extreme gas clumping factors not present in high-resolution cosmological simulations. However, observations of Ly-alpha emission alone cannot distinguish between these two scenarios. We ha…
Inhomogeneous reionization enhances the 1D Lyman-$α$ forest power spectrum on large scales at redshifts $z\geq4$. This is due to coherent fluctuations in the ionized hydrogen fraction that arise from large-scale variations in the post-reionization gas temperature, which fade as the gas cools. It is therefore possible to use these relic fluctuations to constrain inhomogeneous reionization with the power spectrum at wavenumbers $\log_{10}(k/{\rm km^{-1}\,s})\lesssim -1.5$. We use the Sherwood-Relics suite of hybrid radiation hydrodynamical simulations to perform a first analysis of new Lyman-$α$…
We explore the effect of applying a non-linear transformation to the Lyman-$α$ forest transmitted flux $F=e^{-τ}$ and the ability of analytic models to predict the resulting clustering amplitude. Both the large-scale bias of the transformed field (signal) and the amplitude of small scale fluctuations (noise) can be arbitrarily modified, but we were unable to find a transformation that increases significantly the signal-to-noise ratio on large scales using Taylor expansion up to third order. In particular, however, we achieve a 33% improvement in signal to noise for Gaussianized field in transv…
The amplitude of the ionizing background that pervades the intergalactic medium (IGM) at the end of the epoch of reionization provides a valuable constraint on the emissivity of the sources which reionized the Universe. While measurements of the ionizing background at lower redshifts rely on a simulation-calibrated mapping between the photoionization rate and the mean transmission of the Ly$α$ forest, at $z\gtrsim6$ the IGM becomes increasingly opaque, and transmission arises solely in narrow spikes separated by saturated Gunn-Peterson troughs. In this regime, the traditional approach of measu…
