Inference is an integral part of probabilistic topic models, but is often non-trivial to derive an efficient algorithm for a specific model. It is even much more challenging when we want to find a fast inference algorithm which always yields sparse latent representations of documents. In this article, we introduce a simple framework for inference in probabilistic topic models, denoted by FW. This framework is general and flexible enough to be easily adapted to mixture models. It has a linear convergence rate, offers an easy way to incorporate prior knowledge, and provides us an easy way to directly trade off sparsity against quality and time. We demonstrate the goodness and flexibility of FW over existing inference methods by a number of tasks. Finally, we show how inference in topic models with nonconjugate priors can be done efficiently.
Topic sparsity refers to the observation that individual documents usually focus on several salient topics instead of covering a wide variety of topics, and a real topic adopts a narrow range of terms instead of a wide coverage of the vocabulary. Understanding this topic sparsity is especially important for analyzing user-generated web content and social media, which are featured in the form of extremely short posts and discussions. As topic sparsity of individual documents in online social media increases, so does the difficulty of analyzing the online text sources using traditional methods. …
Topic models are popular for modeling discrete data (e.g., texts, images, videos, links), and provide an efficient way to discover hidden structures/semantics in massive data. One of the core problems in this field is the posterior inference for individual data instances. This problem is particularly important in streaming environments, but is often intractable. In this paper, we investigate the use of the Frank-Wolfe algorithm (FW) for recovering sparse solutions to posterior inference. From detailed elucidation of both theoretical and practical aspects, FW exhibits many interesting propertie…
We propose a parsimonious topic model for text corpora. In related models such as Latent Dirichlet Allocation (LDA), all words are modeled topic-specifically, even though many words occur with similar frequencies across different topics. Our modeling determines salient words for each topic, which have topic-specific probabilities, with the rest explained by a universal shared model. Further, in LDA all topics are in principle present in every document. By contrast our model gives sparse topic representation, determining the (small) subset of relevant topics for each document. We derive a Bayes…
Statistical inference on the cancer-site specificities of collective ultra-rare whole genome somatic mutations is an open problem. Traditional statistical methods cannot handle whole-genome mutation data due to their ultra-high-dimensionality and extreme data sparsity -- e.g., >30 million unique variants are observed in the ~1700 whole-genome tumor dataset considered herein, of which >99% variants are encountered only once. To harness information in these rare variants we have recently proposed the "hidden genome model", a formal multilevel multi-logistic model that mines information in ultra-…
Harvard University（哈佛大学）；University of Texas at Austin（得克萨斯大学奥斯汀分校）
Originally designed to model text, topic modeling has become a powerful tool for uncovering latent structure in domains including medicine, finance, and vision. The goals for the model vary depending on the application: in some cases, the discovered topics may be used for prediction or some other downstream task. In other cases, the content of the topic itself may be of intrinsic scientific interest. Unfortunately, even using modern sparse techniques, the discovered topics are often difficult to interpret due to the high dimensionality of the underlying space. To improve topic interpretability…
Modern vehicles are equipped with increasingly complex sensors. These sensors generate large volumes of data that provide opportunities for modeling and analysis. Here, we are interested in exploiting this data to learn aspects of behaviors and the road network associated with individual drivers. Our dataset is collected on a standard vehicle used to commute to work and for personal trips. A Hidden Markov Model (HMM) trained on the GPS position and orientation data is utilized to compress the large amount of position information into a small amount of road segment states. Each state has a set …
Carnegie Mellon University（卡内基梅隆大学）；Indian Institute of Science（印度科学研究所）；Microsoft Research India（微软印度研究院）
We consider the problem of learning a latent $k$-vertex simplex $K\subset\mathbb{R}^d$, given access to $A\in\mathbb{R}^{d\times n}$, which can be viewed as a data matrix with $n$ points that are obtained by randomly perturbing latent points in the simplex $K$ (potentially beyond $K$). A large class of latent variable models, such as adversarial clustering, mixed membership stochastic block models, and topic models can be cast as learning a latent simplex. Bhattacharyya and Kannan (SODA, 2020) give an algorithm for learning such a latent simplex in time roughly $O(k\cdot\textrm{nnz}(A))$, wher…
We present sparse topical coding (STC), a non-probabilistic formulation of topic models for discovering latent representations of large collections of data. Unlike probabilistic topic models, STC relaxes the normalization constraint of admixture proportions and the constraint of defining a normalized likelihood function. Such relaxations make STC amenable to: 1) directly control the sparsity of inferred representations by using sparsity-inducing regularizers; 2) be seamlessly integrated with a convex error function (e.g., SVM hinge loss) for supervised learning; and 3) be efficiently learned w…
Its conceptual appeal and effectiveness has made latent factor modeling an indispensable tool for multivariate analysis. Despite its popularity across many fields, there are outstanding methodological challenges that have hampered practical deployments. One major challenge is the selection of the number of factors, which is exacerbated for dynamic factor models, where factors can disappear, emerge, and/or reoccur over time. Existing tools that assume a fixed number of factors may provide a misguided representation of the data mechanism, especially when the number of factors is crudely misspeci…
Department of Computer Science The University of British Comumbia Kelowna, Canada
Analysis of mobile app reviews has shown its important role in requirement engineering, software maintenance and evolution of mobile apps. Mobile app developers check their users' reviews frequently to clarify the issues experienced by users or capture the new issues that are introduced due to a recent app update. App reviews have a dynamic nature and their discussed topics change over time. The changes in the topics among collected reviews for different versions of an app can reveal important issues about the app update. A main technique in this analysis is using topic modeling algorithms. Ho…
Correlated topic modeling has been limited to small model and problem sizes due to their high computational cost and poor scaling. In this paper, we propose a new model which learns compact topic embeddings and captures topic correlations through the closeness between the topic vectors. Our method enables efficient inference in the low-dimensional embedding space, reducing previous cubic or quadratic time complexity to linear w.r.t the topic size. We further speedup variational inference with a fast sampler to exploit sparsity of topic occurrence. Extensive experiments show that our approach i…
Topic models, and more specifically the class of Latent Dirichlet Allocation (LDA), are widely used for probabilistic modeling of text. MCMC sampling from the posterior distribution is typically performed using a collapsed Gibbs sampler. We propose a parallel sparse partially collapsed Gibbs sampler and compare its speed and efficiency to state-of-the-art samplers for topic models on five well-known text corpora of differing sizes and properties. In particular, we propose and compare two different strategies for sampling the parameter block with latent topic indicators. The experiments show th…
Microsoft Research（微软研究院）；Princeton University（普林斯顿大学）
In this paper, we develop the continuous time dynamic topic model (cDTM). The cDTM is a dynamic topic model that uses Brownian motion to model the latent topics through a sequential collection of documents, where a "topic" is a pattern of word use that we expect to evolve over the course of the collection. We derive an efficient variational approximate inference algorithm that takes advantage of the sparsity of observations in text, a property that lets us easily handle many time points. In contrast to the cDTM, the original discrete-time dynamic topic model (dDTM) requires that time be discre…
Topic models have become popular tools for dimension reduction and exploratory analysis of text data which consists in observed frequencies of a vocabulary of $p$ words in $n$ documents, stored in a $p\times n$ matrix. The main premise is that the mean of this data matrix can be factorized into a product of two non-negative matrices: a $p\times K$ word-topic matrix $A$ and a $K\times n$ topic-document matrix $W$. This paper studies the estimation of $A$ that is possibly element-wise sparse, and the number of topics $K$ is unknown. In this under-explored context, we derive a new minimax lower b…
We introduce a dynamic generative model, Bayesian allocation model (BAM), which establishes explicit connections between nonnegative tensor factorization (NTF), graphical models of discrete probability distributions and their Bayesian extensions, and the topic models such as the latent Dirichlet allocation. BAM is based on a Poisson process, whose events are marked by using a Bayesian network, where the conditional probability tables of this network are then integrated out analytically. We show that the resulting marginal process turns out to be a Polya urn, an integer valued self-reinforcing …
